File Info

Filename
aih-tih-sc-a8a787-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/e88157105dd6aa032082ed4cea7869/aih-tih-sc-a8a787-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:43:08
                             Started mapping on |	Jun 08 07:45:02
                                    Finished on |	Jun 08 08:46:27
       Mapping speed, Million of reads per hour |	289.82

                          Number of input reads |	296664875
                      Average input read length |	262
                                    UNIQUE READS:
                   Uniquely mapped reads number |	284729551
                        Uniquely mapped reads % |	95.98%
                          Average mapped length |	262.22
                       Number of splices: Total |	344102124
            Number of splices: Annotated (sjdb) |	340630974
                       Number of splices: GT/AG |	340956080
                       Number of splices: GC/AG |	2393966
                       Number of splices: AT/AC |	257567
               Number of splices: Non-canonical |	494511
                      Mismatch rate per base, % |	0.19%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.09
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.65
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7549617
             % of reads mapped to multiple loci |	2.54%
        Number of reads mapped to too many loci |	153918
             % of reads mapped to too many loci |	0.05%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	482284
       % of reads unmapped: too many mismatches |	0.16%
            Number of reads unmapped: too short |	1970106
                 % of reads unmapped: too short |	0.66%
                Number of reads unmapped: other |	154332
                     % of reads unmapped: other |	0.05%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3064474
                            % of chimeric reads |	1.03%