Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3c8d62dc6d65d71fe07b3391a2e13d/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/eef9e77940057348812b236b72432a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/eef9e77940057348812b236b72432a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/63df0e76099b03c47ce9f2cdcaf083/aih-tih-sc-01c779-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/a0688930551e426909ca1d9d6d7364/aih-tih-sc-01c779-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 262848966
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-01c779-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	262848966
Known Splicing Events:	260209210
Partial Novel Splicing Events:	1489642
Novel Splicing Events:	1038072
Filtered Splicing Events:	112042

Total splicing  Junctions:	538363
Known Splicing Junctions:	263232
Partial Novel Splicing Junctions:	143289
Novel Splicing Junctions:	131842

===================================================================
Create BED file ...
Create Interact file ...