File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/6ae20c06e1c32a8fbc3c17331dfba9/.command.log
Size
6.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-c35cc3-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/b7127a48727c5dea39486c47ac57c4/aih-tih-sc-c35cc3-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/6ae20c06e1c32a8fbc3c17331dfba9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/6ae20c06e1c32a8fbc3c17331dfba9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/dcd150f2b208b62a9687096d136c77/aih-tih-sc-c35cc3-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
ERBB2--FBXL20
starfusion
arriba
ASPH--GDAP1
starfusion
arriba
NOTCH2--TOP2A
starfusion
arriba
CWC25--AC246680.1
starfusion
arriba
AP2B1--DNAJC7
starfusion
arriba
AC011824.2--LASP1
starfusion
IGL-@-ext--KLC1
starfusion
AL445231.1--IKZF3
starfusion
arriba
CWC25--SRGAP2C
starfusion
arriba
TLK2P1--AC110079.1
starfusion
MED1--AL445231.1
starfusion
CACNB1--LINC01666
starfusion
CACNB1--AC134878.2
starfusion
NOTCH2--NOTCH2
arriba
LSM14A--AC008794.1
arriba
LSM14A--LINC02841
arriba
AC092807.3--DDAH1
arriba
TVP23C--CDRT4
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
NOTCH2--RNU6-465P
arriba
NPHP3--ACAD11
arriba
NOTCH2--SEC22B
arriba
KLRC4--KLRK1
arriba

  0%|          | 0/25 [00:00<?, ?it/s]
Processing ERBB2--FBXL20:   0%|          | 0/25 [00:00<?, ?it/s]
Processing ERBB2--FBXL20:   4%|▍         | 1/25 [00:00<00:02,  9.25it/s]
Processing ASPH--GDAP1:   4%|▍         | 1/25 [00:00<00:02,  9.25it/s]  
Processing ASPH--GDAP1:   8%|▊         | 2/25 [00:00<00:02,  9.48it/s]
Processing NOTCH2--TOP2A:   8%|▊         | 2/25 [00:00<00:02,  9.48it/s]
Processing NOTCH2--TOP2A:  12%|█▏        | 3/25 [00:00<00:02,  9.56it/s]
Processing CWC25--AC246680.1:  12%|█▏        | 3/25 [00:00<00:02,  9.56it/s]
Processing CWC25--AC246680.1:  16%|█▌        | 4/25 [00:00<00:02,  9.59it/s]
Processing AP2B1--DNAJC7:  16%|█▌        | 4/25 [00:00<00:02,  9.59it/s]    
Processing AP2B1--DNAJC7:  20%|██        | 5/25 [00:00<00:02,  9.61it/s]
Processing AC011824.2--LASP1:  20%|██        | 5/25 [00:00<00:02,  9.61it/s]
Processing AC011824.2--LASP1:  24%|██▍       | 6/25 [00:00<00:01,  9.63it/s]
Processing IGL-@-ext--KLC1:  24%|██▍       | 6/25 [00:00<00:01,  9.63it/s]  
Processing IGL-@-ext--KLC1:  28%|██▊       | 7/25 [00:00<00:01,  9.63it/s]
Processing AL445231.1--IKZF3:  28%|██▊       | 7/25 [00:00<00:01,  9.63it/s]
Processing AL445231.1--IKZF3:  32%|███▏      | 8/25 [00:00<00:01,  9.64it/s]
Processing CWC25--SRGAP2C:  32%|███▏      | 8/25 [00:00<00:01,  9.64it/s]   
Processing CWC25--SRGAP2C:  36%|███▌      | 9/25 [00:00<00:01,  9.65it/s]
Processing TLK2P1--AC110079.1:  36%|███▌      | 9/25 [00:00<00:01,  9.65it/s]
Processing TLK2P1--AC110079.1:  40%|████      | 10/25 [00:01<00:01,  9.65it/s]
Processing MED1--AL445231.1:  40%|████      | 10/25 [00:01<00:01,  9.65it/s]  
Processing MED1--AL445231.1:  44%|████▍     | 11/25 [00:01<00:01,  9.65it/s]
Processing CACNB1--LINC01666:  44%|████▍     | 11/25 [00:01<00:01,  9.65it/s]
Processing CACNB1--LINC01666:  48%|████▊     | 12/25 [00:01<00:01,  9.65it/s]
Processing CACNB1--AC134878.2:  48%|████▊     | 12/25 [00:01<00:01,  9.65it/s]
Processing CACNB1--AC134878.2:  52%|█████▏    | 13/25 [00:01<00:01,  9.65it/s]
Processing NOTCH2--NOTCH2:  52%|█████▏    | 13/25 [00:01<00:01,  9.65it/s]    
Processing NOTCH2--NOTCH2:  56%|█████▌    | 14/25 [00:01<00:01,  9.65it/s]
Processing LSM14A--AC008794.1:  56%|█████▌    | 14/25 [00:01<00:01,  9.65it/s]
Processing LSM14A--AC008794.1:  60%|██████    | 15/25 [00:01<00:01,  9.65it/s]
Processing LSM14A--LINC02841:  60%|██████    | 15/25 [00:01<00:01,  9.65it/s] 
Processing LSM14A--LINC02841:  64%|██████▍   | 16/25 [00:01<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  64%|██████▍   | 16/25 [00:01<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  68%|██████▊   | 17/25 [00:01<00:00,  9.65it/s]
Processing TVP23C--CDRT4:  68%|██████▊   | 17/25 [00:01<00:00,  9.65it/s]    
Processing TVP23C--CDRT4:  72%|███████▏  | 18/25 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  72%|███████▏  | 18/25 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  76%|███████▌  | 19/25 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  76%|███████▌  | 19/25 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  80%|████████  | 20/25 [00:02<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  80%|████████  | 20/25 [00:02<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  84%|████████▍ | 21/25 [00:02<00:00,  9.65it/s]
Processing NOTCH2--RNU6-465P:  84%|████████▍ | 21/25 [00:02<00:00,  9.65it/s]
Processing NOTCH2--RNU6-465P:  88%|████████▊ | 22/25 [00:02<00:00,  9.65it/s]
Processing NPHP3--ACAD11:  88%|████████▊ | 22/25 [00:02<00:00,  9.65it/s]    
Processing NPHP3--ACAD11:  92%|█████████▏| 23/25 [00:02<00:00,  9.65it/s]
Processing NOTCH2--SEC22B:  92%|█████████▏| 23/25 [00:02<00:00,  9.65it/s]
Processing NOTCH2--SEC22B:  96%|█████████▌| 24/25 [00:02<00:00,  9.65it/s]
Processing KLRC4--KLRK1:  96%|█████████▌| 24/25 [00:02<00:00,  9.65it/s]  
Processing KLRC4--KLRK1: 100%|██████████| 25/25 [00:02<00:00,  9.65it/s]
Processing KLRC4--KLRK1: 100%|██████████| 25/25 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory