File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/1c3482ff289abd08f89b249c3af78c/.command.log
Size
9.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-816ec7-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/1c3482ff289abd08f89b249c3af78c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/1c3482ff289abd08f89b249c3af78c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/3a178b8ee82f974610250c9db3e367/aih-tih-sc-816ec7-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/1e9a2e8d73febe556ca1eef3b3d9a9/aih-tih-sc-816ec7-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
EFTUD2--SHC1P2
starfusion
arriba
USP43--SPECC1
starfusion
arriba
NSF--CCDC57
starfusion
arriba
MAP2K4--METTL16
starfusion
arriba
TLK2P1--AC110079.1
starfusion
ADORA2B--SSH2
starfusion
TLK2--FAM157A
starfusion
METTL16--MAP2K4
starfusion
arriba
TTC25--ACLY
starfusion
SNU13--LLPH
starfusion
RAP1GAP2--NXN
starfusion
AC104041.1--APBA1
starfusion
AC020550.2--APBA1
starfusion
RAP1GAP2--MTHFR
starfusion
LINC00858--ITGA1
starfusion
KMT2E--AC007384.1
starfusion
arriba
TP53--TP53
arriba
HOXB7--AC126544.1
arriba
HOXB7--MAPK8IP1P2
arriba
STX16--NPEPL1
arriba
GATAD2B--KRT9
arriba
TVP23C--CDRT4
arriba
PITPNA--RAP1GAP2
arriba
RPTOR--AC007638.1
arriba
RPTOR--MMD
arriba
LY75--CD302
arriba
CMTM6--RPL30P4
arriba
CMTM6--CNOT10
arriba
EFTUD2--UBTF
arriba
DIS3L2--ALPI
arriba
STX8--TMEM132E
arriba
STX8--AC005552.1
arriba
AC015911.9--SLFN12L
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
FBXL20--AL590814.1
arriba
FBXL20--AL133457.1
arriba
SLCO1B3--SLCO1B7
arriba
CRYZL2P--SEC16B
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
OSBPL1A--AC117569.2
arriba
OSBPL1A--AC115100.1
arriba

  0%|          | 0/45 [00:00<?, ?it/s]
Processing EFTUD2--SHC1P2:   0%|          | 0/45 [00:00<?, ?it/s]
Processing EFTUD2--SHC1P2:   2%|▏         | 1/45 [00:00<00:04,  9.25it/s]
Processing USP43--SPECC1:   2%|▏         | 1/45 [00:00<00:04,  9.25it/s] 
Processing USP43--SPECC1:   4%|▍         | 2/45 [00:00<00:04,  9.48it/s]
Processing NSF--CCDC57:   4%|▍         | 2/45 [00:00<00:04,  9.48it/s]  
Processing NSF--CCDC57:   7%|▋         | 3/45 [00:00<00:04,  9.55it/s]
Processing MAP2K4--METTL16:   7%|▋         | 3/45 [00:00<00:04,  9.55it/s]
Processing MAP2K4--METTL16:   9%|▉         | 4/45 [00:00<00:04,  9.58it/s]
Processing TLK2P1--AC110079.1:   9%|▉         | 4/45 [00:00<00:04,  9.58it/s]
Processing TLK2P1--AC110079.1:  11%|█         | 5/45 [00:00<00:04,  9.60it/s]
Processing ADORA2B--SSH2:  11%|█         | 5/45 [00:00<00:04,  9.60it/s]     
Processing ADORA2B--SSH2:  13%|█▎        | 6/45 [00:00<00:04,  9.62it/s]
Processing TLK2--FAM157A:  13%|█▎        | 6/45 [00:00<00:04,  9.62it/s]
Processing TLK2--FAM157A:  16%|█▌        | 7/45 [00:00<00:03,  9.63it/s]
Processing METTL16--MAP2K4:  16%|█▌        | 7/45 [00:00<00:03,  9.63it/s]
Processing METTL16--MAP2K4:  18%|█▊        | 8/45 [00:00<00:03,  9.63it/s]
Processing TTC25--ACLY:  18%|█▊        | 8/45 [00:00<00:03,  9.63it/s]    
Processing TTC25--ACLY:  20%|██        | 9/45 [00:00<00:03,  9.64it/s]
Processing SNU13--LLPH:  20%|██        | 9/45 [00:00<00:03,  9.64it/s]
Processing SNU13--LLPH:  22%|██▏       | 10/45 [00:01<00:03,  9.64it/s]
Processing RAP1GAP2--NXN:  22%|██▏       | 10/45 [00:01<00:03,  9.64it/s]
Processing RAP1GAP2--NXN:  24%|██▍       | 11/45 [00:01<00:03,  9.64it/s]
Processing AC104041.1--APBA1:  24%|██▍       | 11/45 [00:01<00:03,  9.64it/s]
Processing AC104041.1--APBA1:  27%|██▋       | 12/45 [00:01<00:03,  9.65it/s]
Processing AC020550.2--APBA1:  27%|██▋       | 12/45 [00:01<00:03,  9.65it/s]
Processing AC020550.2--APBA1:  29%|██▉       | 13/45 [00:01<00:03,  9.65it/s]
Processing RAP1GAP2--MTHFR:  29%|██▉       | 13/45 [00:01<00:03,  9.65it/s]  
Processing RAP1GAP2--MTHFR:  31%|███       | 14/45 [00:01<00:03,  9.65it/s]
Processing LINC00858--ITGA1:  31%|███       | 14/45 [00:01<00:03,  9.65it/s]
Processing LINC00858--ITGA1:  33%|███▎      | 15/45 [00:01<00:03,  9.65it/s]
Processing KMT2E--AC007384.1:  33%|███▎      | 15/45 [00:01<00:03,  9.65it/s]
Processing KMT2E--AC007384.1:  36%|███▌      | 16/45 [00:01<00:03,  9.65it/s]
Processing TP53--TP53:  36%|███▌      | 16/45 [00:01<00:03,  9.65it/s]       
Processing TP53--TP53:  38%|███▊      | 17/45 [00:01<00:02,  9.65it/s]
Processing HOXB7--AC126544.1:  38%|███▊      | 17/45 [00:01<00:02,  9.65it/s]
Processing HOXB7--AC126544.1:  40%|████      | 18/45 [00:01<00:02,  9.65it/s]
Processing HOXB7--MAPK8IP1P2:  40%|████      | 18/45 [00:01<00:02,  9.65it/s]
Processing HOXB7--MAPK8IP1P2:  42%|████▏     | 19/45 [00:01<00:02,  9.65it/s]
Processing STX16--NPEPL1:  42%|████▏     | 19/45 [00:01<00:02,  9.65it/s]    
Processing STX16--NPEPL1:  44%|████▍     | 20/45 [00:02<00:02,  9.65it/s]
Processing GATAD2B--KRT9:  44%|████▍     | 20/45 [00:02<00:02,  9.65it/s]
Processing GATAD2B--KRT9:  47%|████▋     | 21/45 [00:02<00:02,  9.64it/s]
Processing TVP23C--CDRT4:  47%|████▋     | 21/45 [00:02<00:02,  9.64it/s]
Processing TVP23C--CDRT4:  49%|████▉     | 22/45 [00:02<00:02,  9.64it/s]
Processing PITPNA--RAP1GAP2:  49%|████▉     | 22/45 [00:02<00:02,  9.64it/s]
Processing PITPNA--RAP1GAP2:  51%|█████     | 23/45 [00:02<00:02,  9.64it/s]
Processing RPTOR--AC007638.1:  51%|█████     | 23/45 [00:02<00:02,  9.64it/s]
Processing RPTOR--AC007638.1:  53%|█████▎    | 24/45 [00:02<00:02,  9.64it/s]
Processing RPTOR--MMD:  53%|█████▎    | 24/45 [00:02<00:02,  9.64it/s]       
Processing RPTOR--MMD:  56%|█████▌    | 25/45 [00:02<00:02,  9.63it/s]
Processing LY75--CD302:  56%|█████▌    | 25/45 [00:02<00:02,  9.63it/s]
Processing LY75--CD302:  58%|█████▊    | 26/45 [00:02<00:01,  9.63it/s]
Processing CMTM6--RPL30P4:  58%|█████▊    | 26/45 [00:02<00:01,  9.63it/s]
Processing CMTM6--RPL30P4:  60%|██████    | 27/45 [00:02<00:01,  9.64it/s]
Processing CMTM6--CNOT10:  60%|██████    | 27/45 [00:02<00:01,  9.64it/s] 
Processing CMTM6--CNOT10:  62%|██████▏   | 28/45 [00:02<00:01,  9.64it/s]
Processing EFTUD2--UBTF:  62%|██████▏   | 28/45 [00:02<00:01,  9.64it/s] 
Processing EFTUD2--UBTF:  64%|██████▍   | 29/45 [00:03<00:01,  9.64it/s]
Processing DIS3L2--ALPI:  64%|██████▍   | 29/45 [00:03<00:01,  9.64it/s]
Processing DIS3L2--ALPI:  67%|██████▋   | 30/45 [00:03<00:01,  9.64it/s]
Processing STX8--TMEM132E:  67%|██████▋   | 30/45 [00:03<00:01,  9.64it/s]
Processing STX8--TMEM132E:  69%|██████▉   | 31/45 [00:03<00:01,  9.64it/s]
Processing STX8--AC005552.1:  69%|██████▉   | 31/45 [00:03<00:01,  9.64it/s]
Processing STX8--AC005552.1:  71%|███████   | 32/45 [00:03<00:01,  9.64it/s]
Processing AC015911.9--SLFN12L:  71%|███████   | 32/45 [00:03<00:01,  9.64it/s]
Processing AC015911.9--SLFN12L:  73%|███████▎  | 33/45 [00:03<00:01,  9.64it/s]
Processing PCDHA4--PCDHAC2:  73%|███████▎  | 33/45 [00:03<00:01,  9.64it/s]    
Processing PCDHA4--PCDHAC2:  76%|███████▌  | 34/45 [00:03<00:01,  9.64it/s]
Processing PCDHA4--PCDHAC1:  76%|███████▌  | 34/45 [00:03<00:01,  9.64it/s]
Processing PCDHA4--PCDHAC1:  78%|███████▊  | 35/45 [00:03<00:01,  9.64it/s]
Processing PCDHA4--PCDHA13:  78%|███████▊  | 35/45 [00:03<00:01,  9.64it/s]
Processing PCDHA4--PCDHA13:  80%|████████  | 36/45 [00:03<00:00,  9.64it/s]
Processing FBXL20--AL590814.1:  80%|████████  | 36/45 [00:03<00:00,  9.64it/s]
Processing FBXL20--AL590814.1:  82%|████████▏ | 37/45 [00:03<00:00,  9.64it/s]
Processing FBXL20--AL133457.1:  82%|████████▏ | 37/45 [00:03<00:00,  9.64it/s]
Processing FBXL20--AL133457.1:  84%|████████▍ | 38/45 [00:03<00:00,  9.64it/s]
Processing SLCO1B3--SLCO1B7:  84%|████████▍ | 38/45 [00:03<00:00,  9.64it/s]  
Processing SLCO1B3--SLCO1B7:  87%|████████▋ | 39/45 [00:04<00:00,  9.64it/s]
Processing CRYZL2P--SEC16B:  87%|████████▋ | 39/45 [00:04<00:00,  9.64it/s] 
Processing CRYZL2P--SEC16B:  89%|████████▉ | 40/45 [00:04<00:00,  9.64it/s]
Processing PCDHA10--PCDHAC2:  89%|████████▉ | 40/45 [00:04<00:00,  9.64it/s]
Processing PCDHA10--PCDHAC2:  91%|█████████ | 41/45 [00:04<00:00,  9.64it/s]
Processing PCDHA10--PCDHAC1:  91%|█████████ | 41/45 [00:04<00:00,  9.64it/s]
Processing PCDHA10--PCDHAC1:  93%|█████████▎| 42/45 [00:04<00:00,  9.64it/s]
Processing PCDHA10--PCDHA13:  93%|█████████▎| 42/45 [00:04<00:00,  9.64it/s]
Processing PCDHA10--PCDHA13:  96%|█████████▌| 43/45 [00:04<00:00,  9.64it/s]
Processing OSBPL1A--AC117569.2:  96%|█████████▌| 43/45 [00:04<00:00,  9.64it/s]
Processing OSBPL1A--AC117569.2:  98%|█████████▊| 44/45 [00:04<00:00,  9.64it/s]
Processing OSBPL1A--AC115100.1:  98%|█████████▊| 44/45 [00:04<00:00,  9.64it/s]
Processing OSBPL1A--AC115100.1: 100%|██████████| 45/45 [00:04<00:00,  9.64it/s]
Processing OSBPL1A--AC115100.1: 100%|██████████| 45/45 [00:04<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory