Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/97777ec37cd135497ac9f07a1f73ae/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/39477d52a2eed0d9bae00888a91138/aih-tih-sc-150e73-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/97777ec37cd135497ac9f07a1f73ae/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/6886a2a72352f5efe0ff4e29278a8a/aih-tih-sc-150e73-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-150e73-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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