File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/55425b58f1bfc95e2d543dd4c80ff9/.command.log
Size
10.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-89f3a3-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/55425b58f1bfc95e2d543dd4c80ff9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/55425b58f1bfc95e2d543dd4c80ff9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/1c95d952d9321545d262340db36d1e/aih-tih-sc-89f3a3-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/1cb7e7d784675145bbfe6bcc805569/aih-tih-sc-89f3a3-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
AKAP10--TMIGD3
starfusion
arriba
BCR--ARFGAP3
starfusion
arriba
NBPF10--LARGE1
starfusion
IGH-@-ext--FBXW4
starfusion
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
PRSS27--TPSB2
starfusion
COL1A1--SLC45A4
starfusion
SFI1--FKBP5
starfusion
arriba
MTAP--CDKN2B-AS1
starfusion
COX6CP1--COX6C
starfusion
AC005993.1--RGS6
starfusion
arriba
CABIN1--HIC2
starfusion
AC010149.1--AGAP1
starfusion
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
GIGYF2--CHRNG
arriba
STX16--NPEPL1
arriba
RGS6--AC005993.1
arriba
ITGAV--ITGAV
arriba
TVP23C--CDRT4
arriba
AC114814.2--GIGYF2
arriba
AGAP1--GIGYF2
arriba
GIGYF2--SLC16A14
arriba
GIGYF2--AC009950.1
arriba
CHRNG--AC114814.2
arriba
CHRNG--AGAP1
arriba
AC114814.2--CHRNG
arriba
AGAP1--CHRNG
arriba
SPECC1--LINC01750
arriba
PCDHA3--PCDHAC2
arriba
PCDHA3--PCDHA13
arriba
PCDHA3--PCDHAC1
arriba
DNAJB6--PTPRN2
arriba
AKAP10--AQP4-AS1
arriba
AKAP10--CHST9
arriba
AC015911.9--SLFN12L
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba
KLRC4--KLRK1
arriba
CRYZL2P--SEC16B
arriba

  0%|          | 0/50 [00:00<?, ?it/s]
Processing AKAP10--TMIGD3:   0%|          | 0/50 [00:00<?, ?it/s]
Processing AKAP10--TMIGD3:   2%|▏         | 1/50 [00:00<00:05,  9.25it/s]
Processing BCR--ARFGAP3:   2%|▏         | 1/50 [00:00<00:05,  9.25it/s]  
Processing BCR--ARFGAP3:   4%|▍         | 2/50 [00:00<00:05,  9.48it/s]
Processing NBPF10--LARGE1:   4%|▍         | 2/50 [00:00<00:05,  9.48it/s]
Processing NBPF10--LARGE1:   6%|▌         | 3/50 [00:00<00:04,  9.56it/s]
Processing IGH-@-ext--FBXW4:   6%|▌         | 3/50 [00:00<00:04,  9.56it/s]
Processing IGH-@-ext--FBXW4:   8%|▊         | 4/50 [00:00<00:04,  9.59it/s]
Processing TLK2P1--AC110079.1:   8%|▊         | 4/50 [00:00<00:04,  9.59it/s]
Processing TLK2P1--AC110079.1:  10%|█         | 5/50 [00:00<00:04,  9.62it/s]
Processing TLK2--AC240565.1:  10%|█         | 5/50 [00:00<00:04,  9.62it/s]  
Processing TLK2--AC240565.1:  12%|█▏        | 6/50 [00:00<00:04,  9.63it/s]
Processing PRSS27--TPSB2:  12%|█▏        | 6/50 [00:00<00:04,  9.63it/s]   
Processing PRSS27--TPSB2:  14%|█▍        | 7/50 [00:00<00:04,  9.63it/s]
Processing COL1A1--SLC45A4:  14%|█▍        | 7/50 [00:00<00:04,  9.63it/s]
Processing COL1A1--SLC45A4:  16%|█▌        | 8/50 [00:00<00:04,  9.64it/s]
Processing SFI1--FKBP5:  16%|█▌        | 8/50 [00:00<00:04,  9.64it/s]    
Processing SFI1--FKBP5:  18%|█▊        | 9/50 [00:00<00:04,  9.64it/s]
Processing MTAP--CDKN2B-AS1:  18%|█▊        | 9/50 [00:00<00:04,  9.64it/s]
Processing MTAP--CDKN2B-AS1:  20%|██        | 10/50 [00:01<00:04,  9.64it/s]
Processing COX6CP1--COX6C:  20%|██        | 10/50 [00:01<00:04,  9.64it/s]  
Processing COX6CP1--COX6C:  22%|██▏       | 11/50 [00:01<00:04,  9.65it/s]
Processing AC005993.1--RGS6:  22%|██▏       | 11/50 [00:01<00:04,  9.65it/s]
Processing AC005993.1--RGS6:  24%|██▍       | 12/50 [00:01<00:03,  9.65it/s]
Processing CABIN1--HIC2:  24%|██▍       | 12/50 [00:01<00:03,  9.65it/s]    
Processing CABIN1--HIC2:  26%|██▌       | 13/50 [00:01<00:03,  9.65it/s]
Processing AC010149.1--AGAP1:  26%|██▌       | 13/50 [00:01<00:03,  9.65it/s]
Processing AC010149.1--AGAP1:  28%|██▊       | 14/50 [00:01<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  28%|██▊       | 14/50 [00:01<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  30%|███       | 15/50 [00:01<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  30%|███       | 15/50 [00:01<00:03,  9.65it/s] 
Processing PCDHGB2--PCDHGA8:  32%|███▏      | 16/50 [00:01<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  32%|███▏      | 16/50 [00:01<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  34%|███▍      | 17/50 [00:01<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  34%|███▍      | 17/50 [00:01<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  36%|███▌      | 18/50 [00:01<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  36%|███▌      | 18/50 [00:01<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  38%|███▊      | 19/50 [00:01<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  38%|███▊      | 19/50 [00:01<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  40%|████      | 20/50 [00:02<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  40%|████      | 20/50 [00:02<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  42%|████▏     | 21/50 [00:02<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  42%|████▏     | 21/50 [00:02<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  44%|████▍     | 22/50 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  44%|████▍     | 22/50 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  46%|████▌     | 23/50 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  46%|████▌     | 23/50 [00:02<00:02,  9.65it/s] 
Processing PCDHGB2--PCDHGA9:  48%|████▊     | 24/50 [00:02<00:02,  9.65it/s]
Processing GIGYF2--CHRNG:  48%|████▊     | 24/50 [00:02<00:02,  9.65it/s]   
Processing GIGYF2--CHRNG:  50%|█████     | 25/50 [00:02<00:02,  9.65it/s]
Processing STX16--NPEPL1:  50%|█████     | 25/50 [00:02<00:02,  9.65it/s]
Processing STX16--NPEPL1:  52%|█████▏    | 26/50 [00:02<00:02,  9.65it/s]
Processing RGS6--AC005993.1:  52%|█████▏    | 26/50 [00:02<00:02,  9.65it/s]
Processing RGS6--AC005993.1:  54%|█████▍    | 27/50 [00:02<00:02,  9.65it/s]
Processing ITGAV--ITGAV:  54%|█████▍    | 27/50 [00:02<00:02,  9.65it/s]    
Processing ITGAV--ITGAV:  56%|█████▌    | 28/50 [00:02<00:02,  9.65it/s]
Processing TVP23C--CDRT4:  56%|█████▌    | 28/50 [00:02<00:02,  9.65it/s]
Processing TVP23C--CDRT4:  58%|█████▊    | 29/50 [00:03<00:02,  9.65it/s]
Processing AC114814.2--GIGYF2:  58%|█████▊    | 29/50 [00:03<00:02,  9.65it/s]
Processing AC114814.2--GIGYF2:  60%|██████    | 30/50 [00:03<00:02,  9.65it/s]
Processing AGAP1--GIGYF2:  60%|██████    | 30/50 [00:03<00:02,  9.65it/s]     
Processing AGAP1--GIGYF2:  62%|██████▏   | 31/50 [00:03<00:01,  9.65it/s]
Processing GIGYF2--SLC16A14:  62%|██████▏   | 31/50 [00:03<00:01,  9.65it/s]
Processing GIGYF2--SLC16A14:  64%|██████▍   | 32/50 [00:03<00:01,  9.65it/s]
Processing GIGYF2--AC009950.1:  64%|██████▍   | 32/50 [00:03<00:01,  9.65it/s]
Processing GIGYF2--AC009950.1:  66%|██████▌   | 33/50 [00:03<00:01,  9.65it/s]
Processing CHRNG--AC114814.2:  66%|██████▌   | 33/50 [00:03<00:01,  9.65it/s] 
Processing CHRNG--AC114814.2:  68%|██████▊   | 34/50 [00:03<00:01,  9.65it/s]
Processing CHRNG--AGAP1:  68%|██████▊   | 34/50 [00:03<00:01,  9.65it/s]     
Processing CHRNG--AGAP1:  70%|███████   | 35/50 [00:03<00:01,  9.65it/s]
Processing AC114814.2--CHRNG:  70%|███████   | 35/50 [00:03<00:01,  9.65it/s]
Processing AC114814.2--CHRNG:  72%|███████▏  | 36/50 [00:03<00:01,  9.65it/s]
Processing AGAP1--CHRNG:  72%|███████▏  | 36/50 [00:03<00:01,  9.65it/s]     
Processing AGAP1--CHRNG:  74%|███████▍  | 37/50 [00:03<00:01,  9.65it/s]
Processing SPECC1--LINC01750:  74%|███████▍  | 37/50 [00:03<00:01,  9.65it/s]
Processing SPECC1--LINC01750:  76%|███████▌  | 38/50 [00:03<00:01,  9.65it/s]
Processing PCDHA3--PCDHAC2:  76%|███████▌  | 38/50 [00:03<00:01,  9.65it/s]  
Processing PCDHA3--PCDHAC2:  78%|███████▊  | 39/50 [00:04<00:01,  9.65it/s]
Processing PCDHA3--PCDHA13:  78%|███████▊  | 39/50 [00:04<00:01,  9.65it/s]
Processing PCDHA3--PCDHA13:  80%|████████  | 40/50 [00:04<00:01,  9.65it/s]
Processing PCDHA3--PCDHAC1:  80%|████████  | 40/50 [00:04<00:01,  9.65it/s]
Processing PCDHA3--PCDHAC1:  82%|████████▏ | 41/50 [00:04<00:00,  9.65it/s]
Processing DNAJB6--PTPRN2:  82%|████████▏ | 41/50 [00:04<00:00,  9.65it/s] 
Processing DNAJB6--PTPRN2:  84%|████████▍ | 42/50 [00:04<00:00,  9.65it/s]
Processing AKAP10--AQP4-AS1:  84%|████████▍ | 42/50 [00:04<00:00,  9.65it/s]
Processing AKAP10--AQP4-AS1:  86%|████████▌ | 43/50 [00:04<00:00,  9.65it/s]
Processing AKAP10--CHST9:  86%|████████▌ | 43/50 [00:04<00:00,  9.65it/s]   
Processing AKAP10--CHST9:  88%|████████▊ | 44/50 [00:04<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  88%|████████▊ | 44/50 [00:04<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  90%|█████████ | 45/50 [00:04<00:00,  9.65it/s]
Processing PCDHA11--PCDHAC1:  90%|█████████ | 45/50 [00:04<00:00,  9.65it/s]   
Processing PCDHA11--PCDHAC1:  92%|█████████▏| 46/50 [00:04<00:00,  9.65it/s]
Processing PCDHA11--PCDHAC2:  92%|█████████▏| 46/50 [00:04<00:00,  9.65it/s]
Processing PCDHA11--PCDHAC2:  94%|█████████▍| 47/50 [00:04<00:00,  9.65it/s]
Processing PCDHA11--PCDHA13:  94%|█████████▍| 47/50 [00:04<00:00,  9.65it/s]
Processing PCDHA11--PCDHA13:  96%|█████████▌| 48/50 [00:04<00:00,  9.65it/s]
Processing KLRC4--KLRK1:  96%|█████████▌| 48/50 [00:04<00:00,  9.65it/s]    
Processing KLRC4--KLRK1:  98%|█████████▊| 49/50 [00:05<00:00,  9.64it/s]
Processing CRYZL2P--SEC16B:  98%|█████████▊| 49/50 [00:05<00:00,  9.64it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 50/50 [00:05<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 50/50 [00:05<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory