File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/424c30959a9a7b24ff56a4172ad255/.command.log
Size
9.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-ec2fd6-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/aecd790958f580b88f693b84fac255/aih-tih-sc-ec2fd6-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/424c30959a9a7b24ff56a4172ad255/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/424c30959a9a7b24ff56a4172ad255/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/634ef262a0a18142f09d85e0c78dad/aih-tih-sc-ec2fd6-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
ARID1A--CEP85
starfusion
arriba
NFAT5--SNTB2
starfusion
arriba
GTF2I--MYC
starfusion
arriba
ARMH3--ACTR1A
starfusion
arriba
TULP4--ZDHHC14
starfusion
arriba
LRRC28--IGF1R
starfusion
arriba
TRPM4--FTL
starfusion
arriba
LACTB--TLN2
starfusion
arriba
CLASP1--KDM2A
starfusion
arriba
LRRC56--PSMD13
starfusion
arriba
IGF2BP2--DGKG
starfusion
arriba
PVT1--GTF2IRD1
starfusion
arriba
EIF3G--UBE2Q2P2
starfusion
arriba
LTBP4--ZNF567
starfusion
arriba
RAB11FIP3--AC099489.1
starfusion
arriba
WASH2P--IL1F10
starfusion
arriba
NCOA2--LACTB2
starfusion
arriba
HIPK2--KDM7A
starfusion
arriba
RAD9A--ZRANB3
starfusion
arriba
ZNF320--AC011487.2
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
HOOK3--KRT6B
starfusion
SLC12A6--OCA2
starfusion
arriba
UBE2Q2P1--GOLGA6L10
starfusion
AC078864.1--KRT6B
starfusion
arriba
TASP1--SEL1L2
starfusion
RCC1--UBE2D2
starfusion
GOLGA6L10--GOLGA2P6
starfusion
ASAP3--E2F2
starfusion
AL079338.1--LRRC41
starfusion
BLACE--RHEX
starfusion
TVP23C--CDRT4
arriba
ATP13A3--AL138900.2
arriba
ATP13A3--AL732406.1
arriba
IGF2BP2--ETV5
arriba
ZNF320--OSTCP3
arriba
HAGHL--RAB11FIP3
arriba
AP002761.3--P2RY2
arriba
ARHGAP11B--AQR
arriba
AC091057.6--AQR
arriba
CHASERR--H2AZ2P1
arriba
CRYZL2P--SEC16B
arriba

  0%|          | 0/43 [00:00<?, ?it/s]
Processing ARID1A--CEP85:   0%|          | 0/43 [00:00<?, ?it/s]
Processing ARID1A--CEP85:   2%|▏         | 1/43 [00:00<00:04,  9.25it/s]
Processing NFAT5--SNTB2:   2%|▏         | 1/43 [00:00<00:04,  9.25it/s] 
Processing NFAT5--SNTB2:   5%|▍         | 2/43 [00:00<00:04,  9.48it/s]
Processing GTF2I--MYC:   5%|▍         | 2/43 [00:00<00:04,  9.48it/s]  
Processing GTF2I--MYC:   7%|▋         | 3/43 [00:00<00:04,  9.55it/s]
Processing ARMH3--ACTR1A:   7%|▋         | 3/43 [00:00<00:04,  9.55it/s]
Processing ARMH3--ACTR1A:   9%|▉         | 4/43 [00:00<00:04,  9.59it/s]
Processing TULP4--ZDHHC14:   9%|▉         | 4/43 [00:00<00:04,  9.59it/s]
Processing TULP4--ZDHHC14:  12%|█▏        | 5/43 [00:00<00:03,  9.61it/s]
Processing LRRC28--IGF1R:  12%|█▏        | 5/43 [00:00<00:03,  9.61it/s] 
Processing LRRC28--IGF1R:  14%|█▍        | 6/43 [00:00<00:03,  9.62it/s]
Processing TRPM4--FTL:  14%|█▍        | 6/43 [00:00<00:03,  9.62it/s]   
Processing TRPM4--FTL:  16%|█▋        | 7/43 [00:00<00:03,  9.63it/s]
Processing LACTB--TLN2:  16%|█▋        | 7/43 [00:00<00:03,  9.63it/s]
Processing LACTB--TLN2:  19%|█▊        | 8/43 [00:00<00:03,  9.63it/s]
Processing CLASP1--KDM2A:  19%|█▊        | 8/43 [00:00<00:03,  9.63it/s]
Processing CLASP1--KDM2A:  21%|██        | 9/43 [00:00<00:03,  9.64it/s]
Processing LRRC56--PSMD13:  21%|██        | 9/43 [00:00<00:03,  9.64it/s]
Processing LRRC56--PSMD13:  23%|██▎       | 10/43 [00:01<00:03,  9.64it/s]
Processing IGF2BP2--DGKG:  23%|██▎       | 10/43 [00:01<00:03,  9.64it/s] 
Processing IGF2BP2--DGKG:  26%|██▌       | 11/43 [00:01<00:03,  9.64it/s]
Processing PVT1--GTF2IRD1:  26%|██▌       | 11/43 [00:01<00:03,  9.64it/s]
Processing PVT1--GTF2IRD1:  28%|██▊       | 12/43 [00:01<00:03,  9.64it/s]
Processing EIF3G--UBE2Q2P2:  28%|██▊       | 12/43 [00:01<00:03,  9.64it/s]
Processing EIF3G--UBE2Q2P2:  30%|███       | 13/43 [00:01<00:03,  9.64it/s]
Processing LTBP4--ZNF567:  30%|███       | 13/43 [00:01<00:03,  9.64it/s]  
Processing LTBP4--ZNF567:  33%|███▎      | 14/43 [00:01<00:03,  9.64it/s]
Processing RAB11FIP3--AC099489.1:  33%|███▎      | 14/43 [00:01<00:03,  9.64it/s]
Processing RAB11FIP3--AC099489.1:  35%|███▍      | 15/43 [00:01<00:02,  9.64it/s]
Processing WASH2P--IL1F10:  35%|███▍      | 15/43 [00:01<00:02,  9.64it/s]       
Processing WASH2P--IL1F10:  37%|███▋      | 16/43 [00:01<00:02,  9.64it/s]
Processing NCOA2--LACTB2:  37%|███▋      | 16/43 [00:01<00:02,  9.64it/s] 
Processing NCOA2--LACTB2:  40%|███▉      | 17/43 [00:01<00:02,  9.64it/s]
Processing HIPK2--KDM7A:  40%|███▉      | 17/43 [00:01<00:02,  9.64it/s] 
Processing HIPK2--KDM7A:  42%|████▏     | 18/43 [00:01<00:02,  9.64it/s]
Processing RAD9A--ZRANB3:  42%|████▏     | 18/43 [00:01<00:02,  9.64it/s]
Processing RAD9A--ZRANB3:  44%|████▍     | 19/43 [00:01<00:02,  9.64it/s]
Processing ZNF320--AC011487.2:  44%|████▍     | 19/43 [00:01<00:02,  9.64it/s]
Processing ZNF320--AC011487.2:  47%|████▋     | 20/43 [00:02<00:02,  9.64it/s]
Processing TLK2P1--AC110079.1:  47%|████▋     | 20/43 [00:02<00:02,  9.64it/s]
Processing TLK2P1--AC110079.1:  49%|████▉     | 21/43 [00:02<00:02,  9.64it/s]
Processing TLK2--AC240565.1:  49%|████▉     | 21/43 [00:02<00:02,  9.64it/s]  
Processing TLK2--AC240565.1:  51%|█████     | 22/43 [00:02<00:02,  9.64it/s]
Processing HOOK3--KRT6B:  51%|█████     | 22/43 [00:02<00:02,  9.64it/s]    
Processing HOOK3--KRT6B:  53%|█████▎    | 23/43 [00:02<00:02,  9.65it/s]
Processing SLC12A6--OCA2:  53%|█████▎    | 23/43 [00:02<00:02,  9.65it/s]
Processing SLC12A6--OCA2:  56%|█████▌    | 24/43 [00:02<00:01,  9.65it/s]
Processing UBE2Q2P1--GOLGA6L10:  56%|█████▌    | 24/43 [00:02<00:01,  9.65it/s]
Processing UBE2Q2P1--GOLGA6L10:  58%|█████▊    | 25/43 [00:02<00:01,  9.64it/s]
Processing AC078864.1--KRT6B:  58%|█████▊    | 25/43 [00:02<00:01,  9.64it/s]  
Processing AC078864.1--KRT6B:  60%|██████    | 26/43 [00:02<00:01,  9.63it/s]
Processing TASP1--SEL1L2:  60%|██████    | 26/43 [00:02<00:01,  9.63it/s]    
Processing TASP1--SEL1L2:  63%|██████▎   | 27/43 [00:02<00:01,  9.64it/s]
Processing RCC1--UBE2D2:  63%|██████▎   | 27/43 [00:02<00:01,  9.64it/s] 
Processing RCC1--UBE2D2:  65%|██████▌   | 28/43 [00:02<00:01,  9.63it/s]
Processing GOLGA6L10--GOLGA2P6:  65%|██████▌   | 28/43 [00:02<00:01,  9.63it/s]
Processing GOLGA6L10--GOLGA2P6:  67%|██████▋   | 29/43 [00:03<00:01,  9.64it/s]
Processing ASAP3--E2F2:  67%|██████▋   | 29/43 [00:03<00:01,  9.64it/s]        
Processing ASAP3--E2F2:  70%|██████▉   | 30/43 [00:03<00:01,  9.64it/s]
Processing AL079338.1--LRRC41:  70%|██████▉   | 30/43 [00:03<00:01,  9.64it/s]
Processing AL079338.1--LRRC41:  72%|███████▏  | 31/43 [00:03<00:01,  9.64it/s]
Processing BLACE--RHEX:  72%|███████▏  | 31/43 [00:03<00:01,  9.64it/s]       
Processing BLACE--RHEX:  74%|███████▍  | 32/43 [00:03<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  74%|███████▍  | 32/43 [00:03<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  77%|███████▋  | 33/43 [00:03<00:01,  9.64it/s]
Processing ATP13A3--AL138900.2:  77%|███████▋  | 33/43 [00:03<00:01,  9.64it/s]
Processing ATP13A3--AL138900.2:  79%|███████▉  | 34/43 [00:03<00:00,  9.65it/s]
Processing ATP13A3--AL732406.1:  79%|███████▉  | 34/43 [00:03<00:00,  9.65it/s]
Processing ATP13A3--AL732406.1:  81%|████████▏ | 35/43 [00:03<00:00,  9.65it/s]
Processing IGF2BP2--ETV5:  81%|████████▏ | 35/43 [00:03<00:00,  9.65it/s]      
Processing IGF2BP2--ETV5:  84%|████████▎ | 36/43 [00:03<00:00,  9.64it/s]
Processing ZNF320--OSTCP3:  84%|████████▎ | 36/43 [00:03<00:00,  9.64it/s]
Processing ZNF320--OSTCP3:  86%|████████▌ | 37/43 [00:03<00:00,  9.64it/s]
Processing HAGHL--RAB11FIP3:  86%|████████▌ | 37/43 [00:03<00:00,  9.64it/s]
Processing HAGHL--RAB11FIP3:  88%|████████▊ | 38/43 [00:03<00:00,  9.64it/s]
Processing AP002761.3--P2RY2:  88%|████████▊ | 38/43 [00:03<00:00,  9.64it/s]
Processing AP002761.3--P2RY2:  91%|█████████ | 39/43 [00:04<00:00,  9.64it/s]
Processing ARHGAP11B--AQR:  91%|█████████ | 39/43 [00:04<00:00,  9.64it/s]   
Processing ARHGAP11B--AQR:  93%|█████████▎| 40/43 [00:04<00:00,  9.64it/s]
Processing AC091057.6--AQR:  93%|█████████▎| 40/43 [00:04<00:00,  9.64it/s]
Processing AC091057.6--AQR:  95%|█████████▌| 41/43 [00:04<00:00,  9.64it/s]
Processing CHASERR--H2AZ2P1:  95%|█████████▌| 41/43 [00:04<00:00,  9.64it/s]
Processing CHASERR--H2AZ2P1:  98%|█████████▊| 42/43 [00:04<00:00,  9.64it/s]
Processing CRYZL2P--SEC16B:  98%|█████████▊| 42/43 [00:04<00:00,  9.64it/s] 
Processing CRYZL2P--SEC16B: 100%|██████████| 43/43 [00:04<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 43/43 [00:04<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory