File Info
- Filename
- aih-tih-sc-ec2fd6-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/424c30959a9a7b24ff56a4172ad255/aih-tih-sc-ec2fd6-R1_A23YTGFLT4_1.fusions.csv
- Size
- 11.4 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-ec2fd6-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| ARID1A--CEP85 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr1:26772632#chr1:26255171,reading-frame: out-of-frame,type: duplication,split_reads1: 241,split_reads2: 269,discordant_mates: 5,coverage1: 3573,coverage2: 1633,confidence: high | position: chr1:26772632:+#chr1:26255171:+,junction_reads: 521,spanning_reads: 5,ffmp: 1.8698 | |
| NFAT5--SNTB2 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr16:69626528#chr16:69245602,reading-frame: in-frame,type: duplication,split_reads1: 184,split_reads2: 127,discordant_mates: 3,coverage1: 1246,coverage2: 2074,confidence: high | position: chr16:69626528:+#chr16:69245602:+,junction_reads: 316,spanning_reads: 3,ffmp: 1.1331 |
| GTF2I--MYC | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr7:74658068#chr8:127738251,reading-frame: .,type: translocation,split_reads1: 92,split_reads2: 134,discordant_mates: 0,coverage1: 2747,coverage2: 12780,confidence: high | position: chr7:74658068:+#chr8:127738251:+,junction_reads: 246,spanning_reads: 0,ffmp: 0.8747 | |
| ARMH3--ACTR1A | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr10:101889412#chr10:102485733,reading-frame: in-frame,type: duplication,split_reads1: 91,split_reads2: 26,discordant_mates: 0,coverage1: 950,coverage2: 933,confidence: high | position: chr10:101889412:-#chr10:102485733:-,junction_reads: 118,spanning_reads: 0,ffmp: 0.4196 | |
| TULP4--ZDHHC14 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr6:158314268#chr6:157592988,reading-frame: out-of-frame,type: duplication,split_reads1: 70,split_reads2: 36,discordant_mates: 1,coverage1: 1428,coverage2: 685,confidence: high | position: chr6:158314268:+#chr6:157592988:+,junction_reads: 107,spanning_reads: 1,ffmp: 0.3841 |
| LRRC28--IGF1R | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr15:99334129#chr15:98891325,reading-frame: in-frame,type: duplication,split_reads1: 25,split_reads2: 49,discordant_mates: 0,coverage1: 876,coverage2: 2769,confidence: high | position: chr15:99334129:+#chr15:98891325:+,junction_reads: 75,spanning_reads: 0,ffmp: 0.2667 | |
| TRPM4--FTL | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr19:49158259#chr19:48965770,reading-frame: out-of-frame,type: duplication,split_reads1: 42,split_reads2: 24,discordant_mates: 0,coverage1: 2246,coverage2: 5898,confidence: high | position: chr19:49158259:+#chr19:48965770:+,junction_reads: 68,spanning_reads: 0,ffmp: 0.2418 | |
| LACTB--TLN2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr15:63122702#chr15:62673827,reading-frame: out-of-frame,type: duplication,split_reads1: 27,split_reads2: 35,discordant_mates: 0,coverage1: 801,coverage2: 1132,confidence: high | position: chr15:63122702:+#chr15:62673827:+,junction_reads: 64,spanning_reads: 0,ffmp: 0.2276 | |
| CLASP1--KDM2A | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr2:121605701#chr11:67180079,reading-frame: in-frame,type: translocation,split_reads1: 30,split_reads2: 33,discordant_mates: 1,coverage1: 1537,coverage2: 4294,confidence: high | position: chr2:121605701:-#chr11:67180079:+,junction_reads: 64,spanning_reads: 1,ffmp: 0.2301 | |
| LRRC56--PSMD13 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:541624#chr11:248776,reading-frame: in-frame,type: duplication,split_reads1: 34,split_reads2: 24,discordant_mates: 0,coverage1: 823,coverage2: 1100,confidence: high | position: chr11:541624:+#chr11:248776:+,junction_reads: 62,spanning_reads: 0,ffmp: 0.2205 | |
| IGF2BP2--DGKG | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr3:185692699#chr3:186105942,reading-frame: out-of-frame,type: duplication,split_reads1: 22,split_reads2: 22,discordant_mates: 0,coverage1: 4249,coverage2: 304,confidence: high | position: chr3:185692699:-#chr3:186105942:-,junction_reads: 60,spanning_reads: 0,ffmp: 0.2134 | |
| PVT1--GTF2IRD1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:127794734#chr7:74589851,reading-frame: .,type: translocation,split_reads1: 5,split_reads2: 51,discordant_mates: 0,coverage1: 8,coverage2: 1278,confidence: high | position: chr8:127794734:+#chr7:74589851:+,junction_reads: 57,spanning_reads: 0,ffmp: 0.2027 | |
| EIF3G--UBE2Q2P2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr19:10119654#chr15:82404612,reading-frame: out-of-frame,type: translocation,split_reads1: 37,split_reads2: 10,discordant_mates: 0,coverage1: 2253,coverage2: 24,confidence: high | position: chr19:10119654:-#chr15:82404612:+,junction_reads: 54,spanning_reads: 0,ffmp: 0.1914 | |
| LTBP4--ZNF567 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr19:40619493#chr19:36712386,reading-frame: out-of-frame,type: duplication,split_reads1: 18,split_reads2: 30,discordant_mates: 0,coverage1: 2773,coverage2: 442,confidence: high | position: chr19:40619493:+#chr19:36712386:+,junction_reads: 50,spanning_reads: 0,ffmp: 0.1778 | |
| RAB11FIP3--AC099489.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr16:503097#chr16:11462303,reading-frame: in-frame,type: inversion,split_reads1: 30,split_reads2: 15,discordant_mates: 0,coverage1: 2292,coverage2: 126,confidence: high | position: chr16:503097:+#chr16:11462303:-,junction_reads: 46,spanning_reads: 0,ffmp: 0.1636 | |
| WASH2P--IL1F10 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr2:113588703#chr2:113072711,reading-frame: .,type: duplication,split_reads1: 22,split_reads2: 17,discordant_mates: 0,coverage1: 297,coverage2: 85,confidence: high | position: chr2:113588703:+#chr2:113072711:+,junction_reads: 41,spanning_reads: 0,ffmp: 0.1458 | |
| NCOA2--LACTB2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:70403700#chr8:70661897,reading-frame: .,type: duplication,split_reads1: 1,split_reads2: 32,discordant_mates: 0,coverage1: 194,coverage2: 1538,confidence: high | position: chr8:70403700:-#chr8:70661897:-,junction_reads: 33,spanning_reads: 0,ffmp: 0.1173 | |
| HIPK2--KDM7A | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr7:139596717#chr7:140102160,reading-frame: out-of-frame,type: duplication,split_reads1: 13,split_reads2: 17,discordant_mates: 0,coverage1: 2701,coverage2: 704,confidence: high | position: chr7:139596717:-#chr7:140102160:-,junction_reads: 31,spanning_reads: 0,ffmp: 0.1102 | |
| RAD9A--ZRANB3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:67321333#chr2:135353628,reading-frame: .,type: translocation,split_reads1: 2,split_reads2: 19,discordant_mates: 1,coverage1: 6,coverage2: 285,confidence: high | position: chr11:67321333:+#chr2:135353628:-,junction_reads: 23,spanning_reads: 2,ffmp: 0.0889 | |
| ZNF320--AC011487.2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr19:52888127#chr19:53612946,reading-frame: out-of-frame,type: duplication,split_reads1: 26,split_reads2: 2,discordant_mates: 0,coverage1: 4844,coverage2: 60,confidence: high | position: chr19:52888127:-#chr19:53608447:-,junction_reads: 22,spanning_reads: 0,ffmp: 0.0782 | |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 21,spanning_reads: 0,ffmp: 0.0685 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 17,spanning_reads: 0,ffmp: 0.0175 | ||
| HOOK3--KRT6B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:42986795:+#chr12:52450620:-,junction_reads: 15,spanning_reads: 0,ffmp: 0.0267 | ||
| SLC12A6--OCA2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr15:34336410#chr15:28081895,reading-frame: out-of-frame,type: deletion,split_reads1: 8,split_reads2: 4,discordant_mates: 0,coverage1: 477,coverage2: 31,confidence: high | position: chr15:34336410:-#chr15:28081895:-,junction_reads: 12,spanning_reads: 0,ffmp: 0.0427 | |
| UBE2Q2P1--GOLGA6L10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:84526781:-#chr15:82347629:-,junction_reads: 11,spanning_reads: 0,ffmp: 0.0196 | ||
| AC078864.1--KRT6B | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr12:52104159#chr12:52450620,reading-frame: .,type: duplication,split_reads1: 2,split_reads2: 7,discordant_mates: 0,coverage1: 9,coverage2: 317,confidence: high | position: chr12:52104159:-#chr12:52450620:-,junction_reads: 11,spanning_reads: 0,ffmp: 0.0391 | |
| TASP1--SEL1L2 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr20:13483227:-#chr20:13956131:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0356 | |
| RCC1--UBE2D2 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr1:28508160:+#chr5:139600372:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.032 | |
| GOLGA6L10--GOLGA2P6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:82347510:-#chr10:30370881:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.032 | ||
| ASAP3--E2F2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:23484005:-#chr1:23524488:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.032 | ||
| AL079338.1--LRRC41 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:15985503:-#chr1:46298370:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.032 | ||
| BLACE--RHEX | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:155367809:-#chr1:206097733:+,junction_reads: 8,spanning_reads: 0,ffmp: 0.0284 | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 82,split_reads2: 51,discordant_mates: 1,coverage1: 913,coverage2: 492,confidence: high | |
| ATP13A3--AL138900.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:194413759#chr1:157389646,reading-frame: out-of-frame,type: translocation,split_reads1: 70,split_reads2: 4,discordant_mates: 0,coverage1: 2080,coverage2: 14,confidence: high | ||
| ATP13A3--AL732406.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:194413759#chr1:157389646,reading-frame: out-of-frame,type: translocation,split_reads1: 70,split_reads2: 4,discordant_mates: 0,coverage1: 2080,coverage2: 14,confidence: high | ||
| IGF2BP2--ETV5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:185692699#chr3:186105942,reading-frame: out-of-frame,type: duplication,split_reads1: 22,split_reads2: 22,discordant_mates: 0,coverage1: 4249,coverage2: 304,confidence: high | ||
| ZNF320--OSTCP3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:52888127#chr19:53612946,reading-frame: out-of-frame,type: duplication,split_reads1: 26,split_reads2: 2,discordant_mates: 0,coverage1: 4844,coverage2: 60,confidence: high | ||
| HAGHL--RAB11FIP3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:728897#chr16:482527,reading-frame: .,type: duplication,split_reads1: 11,split_reads2: 13,discordant_mates: 0,coverage1: 1720,coverage2: 1861,confidence: high | ||
| AP002761.3--P2RY2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:73307564#chr11:73234156,reading-frame: .,type: duplication/3'-3',split_reads1: 2,split_reads2: 20,discordant_mates: 0,coverage1: 9,coverage2: 680,confidence: high | ||
| ARHGAP11B--AQR | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:30635633#chr15:34867609,reading-frame: .,type: inversion,split_reads1: 1,split_reads2: 13,discordant_mates: 0,coverage1: 88,coverage2: 327,confidence: high | ||
| AC091057.6--AQR | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:30635633#chr15:34867609,reading-frame: .,type: inversion,split_reads1: 1,split_reads2: 13,discordant_mates: 0,coverage1: 88,coverage2: 327,confidence: high | ||
| CHASERR--H2AZ2P1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:92886254#chr15:92733840,reading-frame: .,type: duplication/5'-5',split_reads1: 3,split_reads2: 11,discordant_mates: 0,coverage1: 13,coverage2: 977,confidence: high | ||
| CRYZL2P--SEC16B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:178026155#chr1:177968039,reading-frame: .,type: deletion/read-through,split_reads1: 1,split_reads2: 9,discordant_mates: 0,coverage1: 16,coverage2: 160,confidence: high |
44 rows