Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/c8caa78d206f51686e674e9215678e/aih-tih-sc-f0dbdf-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/b74dd966aa2c517a0b9338e5733bcc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/b74dd966aa2c517a0b9338e5733bcc/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/8acee4811007244c8c652bfe34754c/aih-tih-sc-f0dbdf-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory