File Info

Filename
aih-tih-sc-ecc0bc-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/ad9ddf48026125b97267d9ffebc233/aih-tih-sc-ecc0bc-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:36:31
                             Started mapping on |	Jun 08 07:38:00
                                    Finished on |	Jun 08 08:22:27
       Mapping speed, Million of reads per hour |	325.64

                          Number of input reads |	241243052
                      Average input read length |	229
                                    UNIQUE READS:
                   Uniquely mapped reads number |	230092046
                        Uniquely mapped reads % |	95.38%
                          Average mapped length |	228.31
                       Number of splices: Total |	217194150
            Number of splices: Annotated (sjdb) |	214647442
                       Number of splices: GT/AG |	215261221
                       Number of splices: GC/AG |	1336675
                       Number of splices: AT/AC |	135924
               Number of splices: Non-canonical |	460330
                      Mismatch rate per base, % |	0.34%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.02
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.51
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6834055
             % of reads mapped to multiple loci |	2.83%
        Number of reads mapped to too many loci |	322500
             % of reads mapped to too many loci |	0.13%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	439990
       % of reads unmapped: too many mismatches |	0.18%
            Number of reads unmapped: too short |	1711960
                 % of reads unmapped: too short |	0.71%
                Number of reads unmapped: other |	230334
                     % of reads unmapped: other |	0.10%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2787819
                            % of chimeric reads |	1.16%