|
|
.command.begin
|
6 bytes |
Jun 08, 2026 2:51 AM |
|
|
.command.err
|
74.6 KB |
Jun 08, 2026 4:20 AM |
|
|
.command.log
|
109.5 KB |
Jun 08, 2026 4:20 AM |
|
|
.command.out
|
34.0 KB |
Jun 08, 2026 4:20 AM |
|
|
.command.run
|
14.4 KB |
Jun 08, 2026 2:50 AM |
|
|
.command.sh
|
670 bytes |
Jun 08, 2026 2:50 AM |
|
|
.command.trace
|
299 bytes |
Jun 08, 2026 4:20 AM |
|
|
.command.yaml
|
3.8 KB |
Jun 08, 2026 2:50 AM |
|
|
.exitcode
|
1 byte |
Jun 08, 2026 4:20 AM |
|
|
FusionInspector.log
|
43.8 KB |
Jun 08, 2026 4:20 AM |
|
|
aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv
|
12.8 KB |
Jun 08, 2026 4:20 AM |
|
|
aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
|
121.6 KB |
Jun 08, 2026 4:20 AM |
|
|
aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.FusionInspector.fusions.tsv
|
2.8 MB |
Jun 08, 2026 4:20 AM |
|
|
aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.fusion_inspector_web.html
|
1.8 MB |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/EM_adj_counts.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/add_FFPM.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/add_splice_info.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.bed.bedsort.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.bed.bgzip.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.bed.tabix.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.junction_reads.bam.bam_to_bed.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.junction_reads.bam.bedsort.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.junction_reads.bam.bgzip.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.junction_reads.bam.tabix.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.spanning_reads.bam.bam_to_bed.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.spanning_reads.bam.bedsort.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.spanning_reads.bam.bgzip.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.spanning_reads.bam.tabix.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/annot_filter.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/append_microH_info.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/blast_filter.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/coalesce_junc_n_span.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/cp_consol_bam.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/cp_contigs_file_workdir
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/cp_final.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/cp_gtf_file_workdir.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/create_fi_igvjs.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/cytoband.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/filter_by_frag_threshs.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/final.abridged.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/fusion_annotator.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/fusion_coding_region_effect.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/fusion_contigs.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/fusion_reports_html.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/get_fusion_JUNCTION_reads_from_bam.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/get_fusion_SPANNING_reads_from_bam.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/index_consol_bam.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/init_EM_adj_counts.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/init_spanning_reads_bam.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/mark_dup_reads.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/mark_dups_reads.index.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/merged_contig_fai.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/merged_contig_gtf_to_bed.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/microH.dat.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/prep_igv_extract_junc_reads.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/prep_igv_junc_reads_bam.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/prep_igv_juncspan_fmt.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/prep_igv_pfam_bed.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/prep_igv_pfam_gff3.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/prep_igv_sam_frag_coordss.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/prep_igv_seqsim_bed.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/prep_igv_seqsim_gff3.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/prep_spanning_reads.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/run_STAR.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/samtools_idx_junc_reads_bam.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/samtools_index_span_reads_bam.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
chckpts_dir/span_reads_acc.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/Log.final.out
|
2.0 KB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/Log.out
|
26.1 KB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/Log.progress.out
|
7.4 KB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/SJ.out.tab
|
18.8 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/_STARgenome/exonGeTrInfo.tab
|
172.4 KB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/_STARgenome/exonInfo.tab
|
81.0 KB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/_STARgenome/geneInfo.tab
|
5.6 KB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/_STARgenome/sjdbInfo.txt
|
10.8 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/_STARgenome/sjdbList.fromGTF.out.tab
|
42.9 KB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/_STARgenome/sjdbList.out.tab
|
9.6 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/_STARgenome/transcriptInfo.tab
|
53.2 KB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.fa
|
1.7 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary
|
4.2 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj
|
4.2 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
|
3.0 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
|
3.0 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter
|
2.8 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.info
|
3.0 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter
|
2.8 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter.info
|
2.8 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
|
651.5 KB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
|
10.8 KB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.gtf
|
5.6 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam
|
147.1 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.bai
|
31.9 KB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.failed_reads_during_span_analysis
|
22.3 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
|
6.9 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info
|
660.7 KB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
|
28.0 KB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info
|
3.6 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.read_align_counts.idx
|
288.5 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.read_align_counts.idx.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.spanning_reads_want.idx
|
8.0 KB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam
|
241.4 MB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam.bai
|
39.8 KB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam.bai.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/microH.dat
|
271.7 KB |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/pipeliner.1368.cmds
|
999 bytes |
Jun 08, 2026 4:20 AM |
|
|
fi_workdir/star_align.ok
|
0 bytes |
Jun 08, 2026 4:20 AM |
|
|
versions.yml
|
103 bytes |
Jun 08, 2026 4:20 AM |