File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/0f41ade7ea9d60193fd1578fcacf2f/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:53:55
                             Started mapping on |	Jun 08 10:00:32
                                    Finished on |	Jun 08 11:03:20
       Mapping speed, Million of reads per hour |	283.35

                          Number of input reads |	296573757
                      Average input read length |	244
                                    UNIQUE READS:
                   Uniquely mapped reads number |	285162503
                        Uniquely mapped reads % |	96.15%
                          Average mapped length |	243.85
                       Number of splices: Total |	315038670
            Number of splices: Annotated (sjdb) |	310895073
                       Number of splices: GT/AG |	311619877
                       Number of splices: GC/AG |	1882883
                       Number of splices: AT/AC |	223781
               Number of splices: Non-canonical |	1312129
                      Mismatch rate per base, % |	0.30%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.08
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.71
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8888113
             % of reads mapped to multiple loci |	3.00%
        Number of reads mapped to too many loci |	317107
             % of reads mapped to too many loci |	0.11%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1968004
                 % of reads unmapped: too short |	0.66%
                Number of reads unmapped: other |	238030
                     % of reads unmapped: other |	0.08%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%