File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/b7047a02afd31be07e7f36355237b0/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:35:21
                             Started mapping on |	Jun 08 10:41:48
                                    Finished on |	Jun 08 11:38:28
       Mapping speed, Million of reads per hour |	314.20

                          Number of input reads |	296747855
                      Average input read length |	259
                                    UNIQUE READS:
                   Uniquely mapped reads number |	285489754
                        Uniquely mapped reads % |	96.21%
                          Average mapped length |	259.12
                       Number of splices: Total |	329162307
            Number of splices: Annotated (sjdb) |	325034723
                       Number of splices: GT/AG |	325278827
                       Number of splices: GC/AG |	2351049
                       Number of splices: AT/AC |	275784
               Number of splices: Non-canonical |	1256647
                      Mismatch rate per base, % |	0.18%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.03
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.73
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8638433
             % of reads mapped to multiple loci |	2.91%
        Number of reads mapped to too many loci |	382506
             % of reads mapped to too many loci |	0.13%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2020100
                 % of reads unmapped: too short |	0.68%
                Number of reads unmapped: other |	217062
                     % of reads unmapped: other |	0.07%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%