File Info

Filename
NTC_0001_0001_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0021/A23YTGFLT4/nfcore_rnafusion__d2190e45--20260603-105009/star_alignment/NTC_0001_0001_A23YTGFLT4_1.Log.final.out
Size
1.9 KB
Published
Jun 03, 2026 11:59 AM
                                 Started job on |	Jun 03 18:56:17
                             Started mapping on |	Jun 03 18:58:17
                                    Finished on |	Jun 03 18:58:26
       Mapping speed, Million of reads per hour |	1.56

                          Number of input reads |	3897
                      Average input read length |	200
                                    UNIQUE READS:
                   Uniquely mapped reads number |	362
                        Uniquely mapped reads % |	9.29%
                          Average mapped length |	162.58
                       Number of splices: Total |	24
            Number of splices: Annotated (sjdb) |	19
                       Number of splices: GT/AG |	24
                       Number of splices: GC/AG |	0
                       Number of splices: AT/AC |	0
               Number of splices: Non-canonical |	0
                      Mismatch rate per base, % |	1.53%
                         Deletion rate per base |	0.00%
                        Deletion average length |	1.00
                        Insertion rate per base |	0.00%
                       Insertion average length |	0.00
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	724
             % of reads mapped to multiple loci |	18.58%
        Number of reads mapped to too many loci |	204
             % of reads mapped to too many loci |	5.23%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	101
       % of reads unmapped: too many mismatches |	2.59%
            Number of reads unmapped: too short |	1857
                 % of reads unmapped: too short |	47.65%
                Number of reads unmapped: other |	22
                     % of reads unmapped: other |	0.56%
                                  CHIMERIC READS:
                       Number of chimeric reads |	847
                            % of chimeric reads |	21.73%