## htsjdk.samtools.metrics.StringHeader # CollectInsertSizeMetrics --Histogram_FILE NTC_0001_0001_A23YTGFLT4_1_collectinsertsize.pdf --INPUT NTC_0001_0001_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT NTC_0001_0001_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false ## htsjdk.samtools.metrics.StringHeader # Started on: Wed Jun 03 18:59:09 GMT 2026 ## METRICS CLASS picard.analysis.InsertSizeMetrics MEDIAN_INSERT_SIZE MODE_INSERT_SIZE MEDIAN_ABSOLUTE_DEVIATION MIN_INSERT_SIZE MAX_INSERT_SIZE MEAN_INSERT_SIZE STANDARD_DEVIATION READ_PAIRS PAIR_ORIENTATION WIDTH_OF_10_PERCENT WIDTH_OF_20_PERCENT WIDTH_OF_30_PERCENT WIDTH_OF_40_PERCENT WIDTH_OF_50_PERCENT WIDTH_OF_60_PERCENT WIDTH_OF_70_PERCENT WIDTH_OF_80_PERCENT WIDTH_OF_90_PERCENT WIDTH_OF_95_PERCENT WIDTH_OF_99_PERCENT SAMPLE LIBRARY READ_GROUP 53 26 26 14 74985 55.920728 32.729725 1888 FR 9 17 29 43 53 55 63 75 91 109 749 ## HISTOGRAM java.lang.Integer insert_size All_Reads.fr_count 14 3 15 42 16 42 17 20 18 21 19 15 20 20 21 30 22 26 23 29 24 41 25 27 26 112 27 59 28 51 29 27 30 13 31 14 32 41 33 16 34 9 35 9 36 4 37 4 38 4 39 2 40 3 41 10 42 7 43 24 44 15 45 42 46 4 47 50 48 16 49 8 50 20 51 42 52 16 53 16 54 21 55 25 56 33 57 20 58 32 59 34 60 21 61 10 62 15 63 14 64 11 65 21 66 21 67 18 68 19 69 20 70 15 71 13 72 23 73 6 74 21 75 11 76 14 77 17 78 19 79 16 80 9 81 16 82 16 83 20 84 13 85 12 86 11 87 17 88 12 89 11 90 14 91 19 92 16 93 14 94 14 95 15 96 10 97 12 98 11 99 17 100 13 101 15 102 6 103 12 104 3 105 8 106 7 107 7 108 12 109 3 110 4 111 2 112 2 113 2 114 1 116 4 121 3 122 1 123 3 125 4 127 1 128 1 130 2 131 1 132 2 133 1 137 2 138 1 153 2 157 2 163 3 177 1 178 2 190 1 210 1 211 1 229 2 255 1 271 2 278 1 289 1 293 1