#==================================================
#All numbers are READ count
#==================================================

Total records:                          40316

QC failed:                              0
Optical/PCR duplicate:                  0
Non primary hits                        31718
Unmapped reads:                         3930
mapq < mapq_cut (non-unique):           3557

mapq >= mapq_cut (unique):              1111
Read-1:                                 547
Read-2:                                 564
Reads map to '+':                       565
Reads map to '-':                       546
Non-splice reads:                       1086
Splice reads:                           25
Reads mapped in proper pairs:           978
Proper-paired reads map to different chrom:0