File Info

Filename
aih-tih-sc-f7ac14-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0021/A23YTGFLT4/nfcore_rnafusion__d2190e45--20260603-105009/star_alignment/aih-tih-sc-f7ac14-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Published
Jun 03, 2026 3:35 PM
                                 Started job on |	Jun 03 21:14:43
                             Started mapping on |	Jun 03 21:16:13
                                    Finished on |	Jun 03 22:32:14
       Mapping speed, Million of reads per hour |	229.36

                          Number of input reads |	290592443
                      Average input read length |	218
                                    UNIQUE READS:
                   Uniquely mapped reads number |	274938354
                        Uniquely mapped reads % |	94.61%
                          Average mapped length |	218.03
                       Number of splices: Total |	223046256
            Number of splices: Annotated (sjdb) |	219666831
                       Number of splices: GT/AG |	220878380
                       Number of splices: GC/AG |	1584697
                       Number of splices: AT/AC |	150322
               Number of splices: Non-canonical |	432857
                      Mismatch rate per base, % |	0.39%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.01
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.49
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10247219
             % of reads mapped to multiple loci |	3.53%
        Number of reads mapped to too many loci |	350590
             % of reads mapped to too many loci |	0.12%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	590896
       % of reads unmapped: too many mismatches |	0.20%
            Number of reads unmapped: too short |	2142298
                 % of reads unmapped: too short |	0.74%
                Number of reads unmapped: other |	327618
                     % of reads unmapped: other |	0.11%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3359890
                            % of chimeric reads |	1.16%