File Info

Filename
aih-tih-sc-f7ac14-R1_A23YTGFLT4_1.arriba.fusions.filter_summary.txt
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0021/A23YTGFLT4/nfcore_rnafusion__d2190e45--20260603-105009/arriba/aih-tih-sc-f7ac14-R1_A23YTGFLT4_1.arriba.fusions.filter_summary.txt
Size
2.0 KB
Published
Jun 03, 2026 3:50 PM
ARRIBA FILTERING SUMMARY
================================================================================

Input file: aih-tih-sc-f7ac14-R1_A23YTGFLT4_1.arriba.fusions.tsv
Filter config: arriba_filter_config.yaml
AIH blacklist breakpoints (staged path): blacklist_breakpoint_database_2026-04-27.tsv
Output TSV (all rows): aih-tih-sc-f7ac14-R1_A23YTGFLT4_1.arriba.fusions.filtered.tsv
Output TSV (PASS only): aih-tih-sc-f7ac14-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv

Total fusions: 102
Pass (FILTER=PASS): 7 (6.9%)
Fail (FILTER=FAIL): 95 (93.1%)

AIH curated blacklist:
  Total blacklisted: 5
  All blacklisted rows have FILTER=FAIL

Failure reasons:
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 15
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 14
  confidence_below_min(low<high): 12
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 11
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 7
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 7
  confidence_below_min(medium<high): 5
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 5
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 4
  confidence_below_min(medium<high);aih_curated_blacklist: 3
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 2
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 1
  total_reads_below_min(7.0<8.0): 1
  total_reads_below_min(5.0<8.0): 1
  total_reads_below_min(4.0<8.0): 1
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 1
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 1
  confidence_below_min(low<high);aih_curated_blacklist: 1
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0);aih_curated_blacklist: 1

Breakdown by confidence:
  high: 7 pass, 3 fail (total: 10)
  low: 0 pass, 42 fail (total: 42)
  medium: 0 pass, 50 fail (total: 50)