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aih-tih-sc-f7ac14-R1_A23YTGFLT4_1_seqtool_mqc.tsv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0021/A23YTGFLT4/nfcore_rnafusion__d2190e45--20260603-105009/QC/seqtool/aih-tih-sc-f7ac14-R1_A23YTGFLT4_1_seqtool_mqc.tsv
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dev_rna_exp0021-d2190e45
Published
Jun 03, 2026 4:28 PM

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#id: 'seqtools_metrics'
#plot_type: 'generalstats'
#pconfig:
# reads:
# namespace: 'SeqTools (general stats)'
# title: 'Reads'
# description: 'SeqTools (general stats) — reads'
# format: '{:,.0f}'
# min: 0
# frac_unmapped:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Unmapped'
# description: 'SeqTools (general stats) — frac unmapped'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# frac_dupes:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Dupes'
# description: 'SeqTools (general stats) — frac dupes'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# unique_reads:
# namespace: 'SeqTools (general stats)'
# title: 'Unique Reads'
# description: 'SeqTools (general stats) — unique reads'
# format: '{:,.0f}'
# min: 0
# frac_reads_on_target:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Reads On Target'
# description: 'SeqTools (general stats) — frac reads on target'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# frac_pairs_on_target:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Pairs On Target'
# description: 'SeqTools (general stats) — frac pairs on target'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# frac_reads_off_target:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Reads Off Target'
# description: 'SeqTools (general stats) — frac reads off target'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# frac_pairs_off_target:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Pairs Off Target'
# description: 'SeqTools (general stats) — frac pairs off target'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# reads_on_target:
# namespace: 'SeqTools (general stats)'
# title: 'Reads On Target'
# description: 'SeqTools (general stats) — reads on target'
# format: '{:,.0f}'
# min: 0
# pairs_on_target:
# namespace: 'SeqTools (general stats)'
# title: 'Pairs On Target'
# description: 'SeqTools (general stats) — pairs on target'
# format: '{:,.0f}'
# min: 0
# reads_off_target:
# namespace: 'SeqTools (general stats)'
# title: 'Reads Off Target'
# description: 'SeqTools (general stats) — reads off target'
# format: '{:,.0f}'
# min: 0
# pairs_off_target:
# namespace: 'SeqTools (general stats)'
# title: 'Pairs Off Target'
# description: 'SeqTools (general stats) — pairs off target'
# format: '{:,.0f}'
# min: 0
# mean_depth:
# namespace: 'SeqTools (general stats)'
# title: 'Mean Depth'
# description: 'SeqTools (general stats) — mean depth'
# format: '{:,.2f}'
# q50_depth:
# namespace: 'SeqTools (general stats)'
# title: 'Q50 Depth'
# description: 'SeqTools (general stats) — q50 depth'
# format: '{:,.2f}'
# frac_bases_gt30x:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Bases Gt30X'
# description: 'SeqTools (general stats) — frac bases gt30x'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# frac_bases_gt100x:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Bases Gt100X'
# description: 'SeqTools (general stats) — frac bases gt100x'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# n_q30:
# namespace: 'SeqTools (general stats)'
# title: 'N Q30'
# description: 'SeqTools (general stats) — n q30'
# format: '{:,.2f}'
# gc_bias:
# namespace: 'SeqTools (general stats)'
# title: 'GC Bias'
# description: 'SeqTools (general stats) — Ratio of high GC (63-100%) to low GC (0-43%) reads'
# format: '{:,.3f}'
# min: 0
# scale: 'RdYlGn'
Sample reads frac_unmapped frac_dupes unique_reads frac_reads_on_target frac_pairs_on_target frac_reads_off_target frac_pairs_off_target reads_on_target pairs_on_target reads_off_target pairs_off_target mean_depth q50_depth frac_bases_gt30x frac_bases_gt100x n_q30 gc_bias
'aih-tih-sc-f7ac14-R1_A23YTGFLT4_1' 581184886 0.007047 0.761814 138430228 0.880323 0.916365 0.090091 0.083635 121863243 61163042 12471341 5582208 176.299411 68.0 0.628963 0.419164 0.974082 0.0
135 rows