File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0021/A23YTGFLT4/nfcore_rnafusion__d2190e45--20260603-105009/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 1.9 KB
- Workflow Run
- dev_rna_exp0021-d2190e45
- Published
- Jun 03, 2026 7:07 PM
Content
View in new tab| sample_id | AFTER_FILTERING_Q30_RATE | CONTAMINATION_PCT | FRAC_ANTISENSE | FRAC_UNMAPPED | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | IS_CONTAMINATED | N_Q30 | PERCENT_DUPLICATION | PCT_MITO_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | PCT_MRNA_BASES | PCT_RIBOSOMAL_BASES | SCORE_LOG2TPM1_MEAN_CHRY_SIGNATURE | UNIQUE_READS_RSEQC | UNIQUELY_MAPPED_PERCENT | GC_BIAS | PCT_ADAPTER | PCT_DUPLICATION | PCT_HK_EST_COUNTS | PCT_HK_TPM | PCT_MALE_EST_COUNTS | PCT_MALE_TPM | PCT_RIBO_EST_COUNTS | RIBOSOMAL_CONTAMINATION | PCT_SURVIVING | PERCENT_GC | READS | MAPPED_READS | AVG_SEQUENCE_LENGTH | PERCENT_DUPLICATES | PERCENT_FAILS | TOTAL_SEQUENCES | FRAC_BASES_GT30X | FRAC_READS_OFF_TARGET | FRAC_READS_ON_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT100X | FRAC_PAIRS_OFF_TARGET | FRAC_PAIRS_ON_TARGET | PAIRS_OFF_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | READS_ON_TARGET | EXPECTED_DISTINCT | FRAC_DUPES | UNIQUE_READS | TOTAL_READS | AFTER_FILTERING_GC_CONTENT | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | FRAGMENT_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_ALIGNED | PROPER_PAIRS_PERCENT | PSEUDOALIGNED_READS | SUMMED_MEAN | SUMMED_MEDIAN |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | 0.971788 | 63.13 | 0.9471 | 0.004225 | 164.1 | 147.0 | Yes | 0.972655 | 0.429324 | 0.022 | 0.046 | 97.5213 | 0.0 | 4.061 | 575516536.0 | 96.42 | 0.0 | 43.764861333333336 | 30.733300000000003 | 0.653 | 0.934 | 0.0 | 0.0 | 1.647 | 4.729 | 98.77288366666667 | 592637302.0 | 285718859.0 | 0.717229 | 0.049278 | 0.943343 | 685.827672 | 288.0 | 0.62059 | 0.030386 | 0.969614 | 5088078.0 | 162362031.0 | 16718859.0 | 320056253.0 | 475000445.0 | 0.42751 | 339278754.0 | 9999000000.0 | 0.545996 | 77090716593.0 | 592637302.0 | 90.89523231105113 | 713.759201 | 251 | |||||||||
| NTC_0001_0001_A23YTGFLT4_1 | 0.833423 | N/A | 0.4541 | 0.504234 | 39.4 | 31.0 | Skipped | 0.844833 | 0.309524 | 0.0 | 0.0 | 10.7364 | 0.10219999999999999 | 0.0 | 1111.0 | 9.29 | 0.0 | 51.44381153073656 | 47.3269 | 0.213 | 0.476 | 0.0 | 0.0 | 0.0 | 0.0 | 4.27710645023213 | 7794.0 | 362.0 | 0.0 | 0.383146 | 0.021219 | 0.000181 | 0.0 | 0.0 | 0.946677 | 0.053323 | 1225.0 | 69.0 | 2528.0 | 140.0 | 18766.0 | 0.153451 | 6598.0 | 9999000000.0 | 0.687127 | 650102.0 | 7794.0 | 2.4258358964182953 | 55.920728 | 52 |
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