File Info
- Filename
- run_level_intermediate.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0021/A23YTGFLT4/nfcore_rnafusion__d2190e45--20260603-105009/QC_run_metrics/intermediate/run_level_intermediate.tsv
- Size
- 2.7 KB
- Workflow Run
- dev_rna_exp0021-d2190e45
- Published
- Jun 03, 2026 7:08 PM
Content
View in new tab| SAMPLE_ID | SOURCE_QC | ANALYTE | PIPELINE_VERSION | QC_METRIC | VALUE | METRIC_ORIGIN |
| RUN | RNA | rnafusion_3.0.2-gunknown | CLUSTER_DENSITY | 9457.29 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | READS_PASSING_FILTER_PERCENT | 77.5604 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | Q30_RUN_WIDE_PERCENT | 92.9964 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | OCCUPANCY_RATE | 91.9414 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | YIELD_IN_GB | 9555.185185288 | bclconvert | |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 458076204 | bclconvert |
| NTC_0001_0001_A23YTGFLT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS | 91113 | bclconvert |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 592637302.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.943343 | seqtools |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.969614 | seqtools |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.049278 | seqtools |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.030386 | seqtools |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 320056253.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 162362031.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 16718859.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 5088078.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 285718859.0 | star |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.004225 | star |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 147.0 | kallisto |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 0.046 | kallisto |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 4.729 | kallisto |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 63.13 | contamination |
| NTC_0001_0001_A23YTGFLT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 7794.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_ALL_RNA_FUSIONS | 70 | fusion |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_TRUE_RNA_FUSIONS | 0 | fusion |
| FFPE_HD789_01_RNA_13_A23YTGFLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_FALSE_RNA_FUSIONS | 70 | fusion |
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