/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory Jun 03, 2026 7:58:43 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Wed Jun 03 19:58:43 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-1274d4-R1_A23YTGFLT4_1_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Wed Jun 03 19:58:43 GMT 2026] Executing as ?@nf-c17b06d61b0606ea3f24648ed2996fad-1b625-c47tb on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 WARNING: BAM index file /tmp/nxf.XXXXKsQX4z/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXXKsQX4z/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam INFO 2026-06-03 19:58:46 CollectRnaSeqMetrics Loaded 58279 genes. INFO 2026-06-03 19:59:03 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 16s. Last read position: chr1:1,387,788 INFO 2026-06-03 19:59:20 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 17s. Last read position: chr1:5,961,895 INFO 2026-06-03 19:59:39 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 18s. Last read position: chr1:9,755,092 INFO 2026-06-03 20:00:01 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 22s. Last read position: chr1:12,319,525 INFO 2026-06-03 20:00:16 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 14s. Last read position: chr1:16,633,133 INFO 2026-06-03 20:00:40 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 24s. Last read position: chr1:19,683,191 INFO 2026-06-03 20:01:01 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 20s. Last read position: chr1:21,872,301 INFO 2026-06-03 20:01:14 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 13s. Last read position: chr1:22,661,318 INFO 2026-06-03 20:01:26 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 12s. Last read position: chr1:26,280,158 INFO 2026-06-03 20:01:39 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 12s. Last read position: chr1:27,882,915 INFO 2026-06-03 20:02:00 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 21s. Last read position: chr1:32,014,319 INFO 2026-06-03 20:02:14 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 14s. Last read position: chr1:35,192,701 INFO 2026-06-03 20:02:28 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 13s. Last read position: chr1:39,285,163 INFO 2026-06-03 20:04:24 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 115s. Last read position: chr1:40,069,833 INFO 2026-06-03 20:04:44 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 20s. Last read position: chr1:43,620,124 INFO 2026-06-03 20:04:57 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 12s. Last read position: chr1:47,281,073 INFO 2026-06-03 20:05:16 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 19s. Last read position: chr1:55,081,356 INFO 2026-06-03 20:05:45 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 28s. Last read position: chr1:70,305,896 INFO 2026-06-03 20:06:03 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 18s. Last read position: chr1:89,056,118 INFO 2026-06-03 20:06:13 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 9s. Last read position: chr1:94,903,473 INFO 2026-06-03 20:06:30 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 16s. Last read position: chr1:109,252,824 INFO 2026-06-03 20:06:44 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 14s. Last read position: chr1:112,667,092 INFO 2026-06-03 20:07:02 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 18s. Last read position: chr1:116,392,965 INFO 2026-06-03 20:07:12 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 10s. Last read position: chr1:119,953,569 INFO 2026-06-03 20:07:20 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 7s. Last read position: chr1:143,419,625 INFO 2026-06-03 20:07:27 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 7s. Last read position: chr1:146,133,686 INFO 2026-06-03 20:07:38 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 10s. Last read position: chr1:148,555,080 INFO 2026-06-03 20:07:48 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 9s. Last read position: chr1:149,486,134 INFO 2026-06-03 20:07:53 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 5s. Last read position: chr1:150,333,108 INFO 2026-06-03 20:08:07 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 13s. Last read position: chr1:151,266,332 INFO 2026-06-03 20:08:20 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 13s. Last read position: chr1:153,932,664 INFO 2026-06-03 20:08:43 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 23s. Last read position: chr1:154,183,000 INFO 2026-06-03 20:09:16 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 32s. Last read position: chr1:154,970,363 INFO 2026-06-03 20:09:51 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 34s. Last read position: chr1:155,668,671 INFO 2026-06-03 20:10:17 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 26s. Last read position: chr1:156,248,526 INFO 2026-06-03 20:10:28 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 10s. Last read position: chr1:159,052,000 INFO 2026-06-03 20:10:47 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 18s. Last read position: chr1:161,051,435 INFO 2026-06-03 20:11:02 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 15s. Last read position: chr1:164,559,981 INFO 2026-06-03 20:11:16 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 13s. Last read position: chr1:171,541,689 INFO 2026-06-03 20:11:35 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 18s. Last read position: chr1:179,652,169 INFO 2026-06-03 20:11:44 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 8s. Last read position: chr1:185,299,731 INFO 2026-06-03 20:11:58 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 13s. Last read position: chr1:196,736,853 INFO 2026-06-03 20:12:13 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 15s. Last read position: chr1:201,946,179 INFO 2026-06-03 20:12:29 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 16s. Last read position: chr1:204,469,579 INFO 2026-06-03 20:12:38 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 9s. Last read position: chr1:207,887,074 INFO 2026-06-03 20:12:47 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 8s. Last read position: chr1:222,629,311 INFO 2026-06-03 20:13:02 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 14s. Last read position: chr1:226,071,719 INFO 2026-06-03 20:13:35 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 33s. Last read position: chr1:230,787,512 INFO 2026-06-03 20:13:49 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 13s. Last read position: chr1:236,142,755 INFO 2026-06-03 20:14:08 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 18s. Last read position: chr1:246,916,280 INFO 2026-06-03 20:14:19 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 11s. Last read position: chr2:9,913,129 INFO 2026-06-03 20:14:30 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 10s. Last read position: chr2:20,311,551 INFO 2026-06-03 20:14:41 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 10s. Last read position: chr2:26,284,139 INFO 2026-06-03 20:14:50 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 8s. Last read position: chr2:28,241,321 INFO 2026-06-03 20:15:01 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 11s. Last read position: chr2:32,916,254 INFO 2026-06-03 20:15:05 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,264 INFO 2026-06-03 20:15:08 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406 INFO 2026-06-03 20:15:14 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 5s. Last read position: chr2:37,237,775 INFO 2026-06-03 20:15:22 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 8s. Last read position: chr2:43,230,984 INFO 2026-06-03 20:15:35 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 13s. Last read position: chr2:47,813,789 INFO 2026-06-03 20:16:00 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 25s. Last read position: chr2:55,598,869 INFO 2026-06-03 20:16:23 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 22s. Last read position: chr2:64,636,815 INFO 2026-06-03 20:16:40 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 17s. Last read position: chr2:71,072,640 INFO 2026-06-03 20:16:54 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 13s. Last read position: chr2:74,457,463 INFO 2026-06-03 20:17:00 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 6s. Last read position: chr2:85,840,185 INFO 2026-06-03 20:17:06 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 5s. Last read position: chr2:88,857,302 INFO 2026-06-03 20:17:14 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 7s. Last read position: chr2:96,612,816 INFO 2026-06-03 20:17:24 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 9s. Last read position: chr2:99,449,381 INFO 2026-06-03 20:17:32 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 8s. Last read position: chr2:108,672,930 INFO 2026-06-03 20:17:36 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 4s. Last read position: chr2:109,836,150 INFO 2026-06-03 20:17:41 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 5s. Last read position: chr2:112,417,258 INFO 2026-06-03 20:17:50 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 8s. Last read position: chr2:127,288,679 INFO 2026-06-03 20:17:59 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 8s. Last read position: chr2:131,592,015 INFO 2026-06-03 20:18:08 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 9s. Last read position: chr2:151,271,683 INFO 2026-06-03 20:18:20 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 12s. Last read position: chr2:161,507,388 INFO 2026-06-03 20:18:33 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 12s. Last read position: chr2:174,481,754 INFO 2026-06-03 20:19:15 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 42s. Last read position: chr2:178,651,959 INFO 2026-06-03 20:19:56 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 41s. Last read position: chr2:188,987,088 INFO 2026-06-03 20:20:08 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 11s. Last read position: chr2:189,110,378 INFO 2026-06-03 20:20:34 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 26s. Last read position: chr2:196,343,690 INFO 2026-06-03 20:20:47 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 12s. Last read position: chr2:201,479,971 INFO 2026-06-03 20:21:02 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 15s. Last read position: chr2:210,098,091 INFO 2026-06-03 20:21:13 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 11s. Last read position: chr2:215,367,953 INFO 2026-06-03 20:21:36 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 22s. Last read position: chr2:215,372,359 INFO 2026-06-03 20:22:01 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:23:15s. Time for last 1,000,000: 25s. Last read position: chr2:215,379,167 INFO 2026-06-03 20:22:35 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:23:48s. Time for last 1,000,000: 33s. Last read position: chr2:215,386,747 INFO 2026-06-03 20:23:15 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:24:29s. Time for last 1,000,000: 40s. Last read position: chr2:215,397,791 INFO 2026-06-03 20:24:06 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:25:20s. Time for last 1,000,000: 51s. Last read position: chr2:215,408,299 INFO 2026-06-03 20:25:08 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:26:21s. Time for last 1,000,000: 61s. Last read position: chr2:215,422,185 INFO 2026-06-03 20:26:27 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:27:40s. Time for last 1,000,000: 78s. Last read position: chr2:215,433,343 INFO 2026-06-03 20:27:04 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:28:17s. Time for last 1,000,000: 37s. Last read position: chr2:218,238,835 INFO 2026-06-03 20:27:13 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:28:27s. Time for last 1,000,000: 9s. Last read position: chr2:222,922,720 INFO 2026-06-03 20:27:32 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:28:46s. Time for last 1,000,000: 18s. Last read position: chr2:230,503,099 INFO 2026-06-03 20:27:51 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:29:04s. Time for last 1,000,000: 18s. Last read position: chr2:234,496,268 INFO 2026-06-03 20:28:06 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:29:19s. Time for last 1,000,000: 15s. Last read position: chr2:237,368,607 INFO 2026-06-03 20:28:36 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:29:49s. Time for last 1,000,000: 29s. Last read position: chr2:238,091,510 INFO 2026-06-03 20:28:54 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:30:07s. Time for last 1,000,000: 18s. Last read position: chr2:241,670,747 INFO 2026-06-03 20:29:15 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:30:28s. Time for last 1,000,000: 20s. Last read position: chr3:9,893,158 INFO 2026-06-03 20:29:25 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:30:38s. Time for last 1,000,000: 10s. Last read position: chr3:13,397,392 INFO 2026-06-03 20:29:33 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:30:46s. Time for last 1,000,000: 7s. Last read position: chr3:21,497,097 INFO 2026-06-03 20:29:44 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:30:57s. Time for last 1,000,000: 11s. Last read position: chr3:33,828,873 INFO 2026-06-03 20:29:54 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:31:08s. Time for last 1,000,000: 10s. Last read position: chr3:39,411,934 INFO 2026-06-03 20:30:12 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:31:26s. Time for last 1,000,000: 18s. Last read position: chr3:44,989,162 INFO 2026-06-03 20:30:23 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:31:36s. Time for last 1,000,000: 10s. Last read position: chr3:47,122,306 INFO 2026-06-03 20:30:35 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:31:48s. Time for last 1,000,000: 11s. Last read position: chr3:48,469,098 INFO 2026-06-03 20:30:49 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:32:02s. Time for last 1,000,000: 14s. Last read position: chr3:49,057,093 INFO 2026-06-03 20:31:01 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:32:14s. Time for last 1,000,000: 11s. Last read position: chr3:49,706,028 INFO 2026-06-03 20:31:12 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:32:25s. Time for last 1,000,000: 11s. Last read position: chr3:51,393,386 INFO 2026-06-03 20:31:22 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:32:35s. Time for last 1,000,000: 9s. Last read position: chr3:52,561,787 INFO 2026-06-03 20:31:34 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:32:48s. Time for last 1,000,000: 12s. Last read position: chr3:58,078,787 INFO 2026-06-03 20:31:51 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:33:05s. Time for last 1,000,000: 16s. Last read position: chr3:68,636,592 INFO 2026-06-03 20:32:05 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:33:19s. Time for last 1,000,000: 14s. Last read position: chr3:99,850,463 INFO 2026-06-03 20:32:21 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:33:34s. Time for last 1,000,000: 15s. Last read position: chr3:111,913,376 INFO 2026-06-03 20:32:27 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:33:40s. Time for last 1,000,000: 6s. Last read position: chr3:119,587,567 INFO 2026-06-03 20:32:35 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:33:48s. Time for last 1,000,000: 7s. Last read position: chr3:122,700,217 INFO 2026-06-03 20:32:42 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:33:56s. Time for last 1,000,000: 7s. Last read position: chr3:126,727,110 INFO 2026-06-03 20:32:51 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:34:04s. Time for last 1,000,000: 8s. Last read position: chr3:129,556,405 INFO 2026-06-03 20:33:01 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:34:15s. Time for last 1,000,000: 10s. Last read position: chr3:136,195,021 INFO 2026-06-03 20:33:16 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:34:30s. Time for last 1,000,000: 14s. Last read position: chr3:146,517,066 INFO 2026-06-03 20:33:23 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:34:36s. Time for last 1,000,000: 6s. Last read position: chr3:148,857,466 INFO 2026-06-03 20:33:30 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:34:44s. Time for last 1,000,000: 7s. Last read position: chr3:156,554,970 INFO 2026-06-03 20:33:40 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:34:54s. Time for last 1,000,000: 10s. Last read position: chr3:172,247,753 INFO 2026-06-03 20:33:52 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:35:05s. Time for last 1,000,000: 11s. Last read position: chr3:184,166,615 INFO 2026-06-03 20:34:12 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:35:25s. Time for last 1,000,000: 20s. Last read position: chr3:187,043,066 INFO 2026-06-03 20:34:23 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:35:36s. Time for last 1,000,000: 10s. Last read position: chr3:195,866,975 INFO 2026-06-03 20:34:41 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:35:54s. Time for last 1,000,000: 18s. Last read position: chr4:792,440 INFO 2026-06-03 20:34:52 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:36:06s. Time for last 1,000,000: 11s. Last read position: chr4:2,716,022 INFO 2026-06-03 20:35:08 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:36:21s. Time for last 1,000,000: 15s. Last read position: chr4:7,816,049 INFO 2026-06-03 20:35:16 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:36:30s. Time for last 1,000,000: 8s. Last read position: chr4:25,234,228 INFO 2026-06-03 20:35:26 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:36:39s. Time for last 1,000,000: 9s. Last read position: chr4:41,100,721 INFO 2026-06-03 20:35:36 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:36:50s. Time for last 1,000,000: 10s. Last read position: chr4:56,486,360 INFO 2026-06-03 20:35:44 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:36:57s. Time for last 1,000,000: 7s. Last read position: chr4:75,012,917 INFO 2026-06-03 20:35:51 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:37:04s. Time for last 1,000,000: 7s. Last read position: chr4:77,066,249 INFO 2026-06-03 20:36:09 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:37:22s. Time for last 1,000,000: 17s. Last read position: chr4:87,457,903 INFO 2026-06-03 20:36:18 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:37:31s. Time for last 1,000,000: 8s. Last read position: chr4:102,802,596 INFO 2026-06-03 20:36:48 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:38:02s. Time for last 1,000,000: 30s. Last read position: chr4:119,502,642 INFO 2026-06-03 20:37:03 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:38:16s. Time for last 1,000,000: 14s. Last read position: chr4:140,622,835 INFO 2026-06-03 20:37:20 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:38:34s. Time for last 1,000,000: 17s. Last read position: chr4:151,174,894 INFO 2026-06-03 20:37:31 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:38:45s. Time for last 1,000,000: 11s. Last read position: chr4:168,878,252 INFO 2026-06-03 20:37:41 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:38:54s. Time for last 1,000,000: 9s. Last read position: chr5:891,155 INFO 2026-06-03 20:37:50 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:39:04s. Time for last 1,000,000: 9s. Last read position: chr5:14,374,255 INFO 2026-06-03 20:38:13 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:39:26s. Time for last 1,000,000: 22s. Last read position: chr5:32,599,039 INFO 2026-06-03 20:38:26 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:39:39s. Time for last 1,000,000: 13s. Last read position: chr5:39,202,700 INFO 2026-06-03 20:38:35 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:39:49s. Time for last 1,000,000: 9s. Last read position: chr5:55,941,141 INFO 2026-06-03 20:38:50 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:40:03s. Time for last 1,000,000: 14s. Last read position: chr5:67,184,486 INFO 2026-06-03 20:38:55 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:40:09s. Time for last 1,000,000: 5s. Last read position: chr5:71,632,153 INFO 2026-06-03 20:39:06 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:40:20s. Time for last 1,000,000: 11s. Last read position: chr5:78,421,801 INFO 2026-06-03 20:39:15 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:40:28s. Time for last 1,000,000: 8s. Last read position: chr5:83,538,835 INFO 2026-06-03 20:39:32 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:40:45s. Time for last 1,000,000: 16s. Last read position: chr5:95,731,671 INFO 2026-06-03 20:39:52 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:41:06s. Time for last 1,000,000: 20s. Last read position: chr5:112,864,798 INFO 2026-06-03 20:40:03 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:41:16s. Time for last 1,000,000: 10s. Last read position: chr5:131,439,620 INFO 2026-06-03 20:40:14 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:41:27s. Time for last 1,000,000: 10s. Last read position: chr5:134,811,825 INFO 2026-06-03 20:40:24 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:41:38s. Time for last 1,000,000: 10s. Last read position: chr5:139,307,898 INFO 2026-06-03 20:40:35 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:41:49s. Time for last 1,000,000: 10s. Last read position: chr5:141,246,954 INFO 2026-06-03 20:40:47 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:42:00s. Time for last 1,000,000: 11s. Last read position: chr5:146,459,166 INFO 2026-06-03 20:40:55 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:42:08s. Time for last 1,000,000: 7s. Last read position: chr5:150,134,860 INFO 2026-06-03 20:41:02 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:42:15s. Time for last 1,000,000: 7s. Last read position: chr5:150,402,601 INFO 2026-06-03 20:41:09 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:42:22s. Time for last 1,000,000: 7s. Last read position: chr5:150,405,117 INFO 2026-06-03 20:41:18 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:42:31s. Time for last 1,000,000: 9s. Last read position: chr5:150,407,246 INFO 2026-06-03 20:41:27 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:42:40s. Time for last 1,000,000: 8s. Last read position: chr5:151,664,157 INFO 2026-06-03 20:41:38 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:42:51s. Time for last 1,000,000: 10s. Last read position: chr5:168,244,587 INFO 2026-06-03 20:41:57 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:43:10s. Time for last 1,000,000: 19s. Last read position: chr5:171,910,753 INFO 2026-06-03 20:42:04 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:43:18s. Time for last 1,000,000: 7s. Last read position: chr5:177,307,583 INFO 2026-06-03 20:42:14 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:43:27s. Time for last 1,000,000: 9s. Last read position: chr5:179,618,308 INFO 2026-06-03 20:42:31 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:43:44s. Time for last 1,000,000: 17s. Last read position: chr5:179,836,648 INFO 2026-06-03 20:42:40 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:43:54s. Time for last 1,000,000: 9s. Last read position: chr6:3,225,287 INFO 2026-06-03 20:42:48 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:44:01s. Time for last 1,000,000: 7s. Last read position: chr6:12,120,283 INFO 2026-06-03 20:42:55 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:44:08s. Time for last 1,000,000: 7s. Last read position: chr6:25,610,105 INFO 2026-06-03 20:42:58 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:44:12s. Time for last 1,000,000: 3s. Last read position: chr6:27,866,952 INFO 2026-06-03 20:43:03 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:44:17s. Time for last 1,000,000: 4s. Last read position: chr6:30,490,459 INFO 2026-06-03 20:43:11 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:44:25s. Time for last 1,000,000: 8s. Last read position: chr6:31,271,838 INFO 2026-06-03 20:43:21 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:44:34s. Time for last 1,000,000: 9s. Last read position: chr6:31,660,057 INFO 2026-06-03 20:43:25 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:44:39s. Time for last 1,000,000: 4s. Last read position: chr6:31,943,913 INFO 2026-06-03 20:43:39 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:44:52s. Time for last 1,000,000: 13s. Last read position: chr6:32,179,908 INFO 2026-06-03 20:43:42 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:44:56s. Time for last 1,000,000: 3s. Last read position: chr6:32,850,375 INFO 2026-06-03 20:43:50 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:45:03s. Time for last 1,000,000: 7s. Last read position: chr6:33,277,750 INFO 2026-06-03 20:43:58 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:45:11s. Time for last 1,000,000: 8s. Last read position: chr6:34,288,802 INFO 2026-06-03 20:44:03 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:45:16s. Time for last 1,000,000: 5s. Last read position: chr6:38,152,297 INFO 2026-06-03 20:44:11 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:45:25s. Time for last 1,000,000: 8s. Last read position: chr6:43,339,768 INFO 2026-06-03 20:44:19 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:45:33s. Time for last 1,000,000: 7s. Last read position: chr6:53,012,198 INFO 2026-06-03 20:45:04 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:46:18s. Time for last 1,000,000: 44s. Last read position: chr6:73,471,494 INFO 2026-06-03 20:45:25 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:46:39s. Time for last 1,000,000: 21s. Last read position: chr6:85,427,596 INFO 2026-06-03 20:45:35 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:46:49s. Time for last 1,000,000: 10s. Last read position: chr6:99,551,879 INFO 2026-06-03 20:45:46 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:46:59s. Time for last 1,000,000: 10s. Last read position: chr6:112,148,239 INFO 2026-06-03 20:45:55 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:47:09s. Time for last 1,000,000: 9s. Last read position: chr6:128,929,444 INFO 2026-06-03 20:46:13 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:47:27s. Time for last 1,000,000: 18s. Last read position: chr6:138,430,516 INFO 2026-06-03 20:46:22 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:47:36s. Time for last 1,000,000: 8s. Last read position: chr6:149,409,575 INFO 2026-06-03 20:46:46 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:48:00s. Time for last 1,000,000: 24s. Last read position: chr6:154,824,243 INFO 2026-06-03 20:46:57 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:48:10s. Time for last 1,000,000: 10s. Last read position: chr6:159,041,443 INFO 2026-06-03 20:47:10 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:48:23s. Time for last 1,000,000: 12s. Last read position: chr6:168,549,175 INFO 2026-06-03 20:47:23 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:48:37s. Time for last 1,000,000: 13s. Last read position: chr7:1,497,228 INFO 2026-06-03 20:47:30 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:48:43s. Time for last 1,000,000: 6s. Last read position: chr7:5,315,983 INFO 2026-06-03 20:47:38 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:48:51s. Time for last 1,000,000: 7s. Last read position: chr7:5,528,496 INFO 2026-06-03 20:47:47 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:49:00s. Time for last 1,000,000: 8s. Last read position: chr7:6,600,019 INFO 2026-06-03 20:47:54 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:49:08s. Time for last 1,000,000: 7s. Last read position: chr7:26,185,027 INFO 2026-06-03 20:48:13 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:49:27s. Time for last 1,000,000: 19s. Last read position: chr7:36,894,861 INFO 2026-06-03 20:48:21 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:49:34s. Time for last 1,000,000: 7s. Last read position: chr7:44,110,080 INFO 2026-06-03 20:48:30 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:49:43s. Time for last 1,000,000: 9s. Last read position: chr7:47,424,155 INFO 2026-06-03 20:48:38 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:49:51s. Time for last 1,000,000: 8s. Last read position: chr7:70,764,834 INFO 2026-06-03 20:48:43 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:49:56s. Time for last 1,000,000: 4s. Last read position: chr7:73,769,335 INFO 2026-06-03 20:48:52 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:50:05s. Time for last 1,000,000: 8s. Last read position: chr7:75,421,889 INFO 2026-06-03 20:48:58 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:50:11s. Time for last 1,000,000: 5s. Last read position: chr7:76,978,608 INFO 2026-06-03 20:49:12 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:50:26s. Time for last 1,000,000: 14s. Last read position: chr7:92,022,988 INFO 2026-06-03 20:49:56 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:51:09s. Time for last 1,000,000: 43s. Last read position: chr7:94,407,874 INFO 2026-06-03 20:50:11 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:51:25s. Time for last 1,000,000: 15s. Last read position: chr7:98,890,384 INFO 2026-06-03 20:50:26 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:51:39s. Time for last 1,000,000: 14s. Last read position: chr7:100,158,222 INFO 2026-06-03 20:50:34 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:51:47s. Time for last 1,000,000: 8s. Last read position: chr7:100,999,144 INFO 2026-06-03 20:50:40 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:51:53s. Time for last 1,000,000: 5s. Last read position: chr7:102,659,770 INFO 2026-06-03 20:51:02 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:52:15s. Time for last 1,000,000: 21s. Last read position: chr7:108,182,907 INFO 2026-06-03 20:51:12 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:52:26s. Time for last 1,000,000: 10s. Last read position: chr7:127,990,969 INFO 2026-06-03 20:51:21 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:52:34s. Time for last 1,000,000: 8s. Last read position: chr7:134,958,227 INFO 2026-06-03 20:51:28 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:52:41s. Time for last 1,000,000: 6s. Last read position: chr7:139,716,726 INFO 2026-06-03 20:51:37 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:52:50s. Time for last 1,000,000: 9s. Last read position: chr7:143,390,573 INFO 2026-06-03 20:51:42 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:52:55s. Time for last 1,000,000: 4s. Last read position: chr7:150,284,803 INFO 2026-06-03 20:51:48 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:53:01s. Time for last 1,000,000: 6s. Last read position: chr7:151,490,958 INFO 2026-06-03 20:52:12 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:53:26s. Time for last 1,000,000: 24s. Last read position: chr7:158,934,207 INFO 2026-06-03 20:52:26 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:53:39s. Time for last 1,000,000: 13s. Last read position: chr8:17,543,655 INFO 2026-06-03 20:52:39 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:53:52s. Time for last 1,000,000: 13s. Last read position: chr8:22,606,998 INFO 2026-06-03 20:52:48 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:54:02s. Time for last 1,000,000: 9s. Last read position: chr8:27,658,913 INFO 2026-06-03 20:52:55 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:54:08s. Time for last 1,000,000: 6s. Last read position: chr8:38,253,627 INFO 2026-06-03 20:53:16 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:54:29s. Time for last 1,000,000: 20s. Last read position: chr8:41,509,654 INFO 2026-06-03 20:53:29 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:54:43s. Time for last 1,000,000: 13s. Last read position: chr8:53,841,610 INFO 2026-06-03 20:53:42 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:54:55s. Time for last 1,000,000: 12s. Last read position: chr8:67,343,193 INFO 2026-06-03 20:53:50 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:55:03s. Time for last 1,000,000: 7s. Last read position: chr8:84,911,764 INFO 2026-06-03 20:53:58 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:55:11s. Time for last 1,000,000: 8s. Last read position: chr8:98,950,707 INFO 2026-06-03 20:54:19 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:55:32s. Time for last 1,000,000: 21s. Last read position: chr8:103,140,896 INFO 2026-06-03 20:54:32 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:55:45s. Time for last 1,000,000: 12s. Last read position: chr8:123,254,409 INFO 2026-06-03 20:54:44 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:55:57s. Time for last 1,000,000: 11s. Last read position: chr8:140,451,043 INFO 2026-06-03 20:54:57 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:56:10s. Time for last 1,000,000: 13s. Last read position: chr8:143,818,193 INFO 2026-06-03 20:54:58 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:56:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,751 INFO 2026-06-03 20:54:59 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:56:12s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,279 INFO 2026-06-03 20:55:12 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:56:25s. Time for last 1,000,000: 12s. Last read position: chr8:143,938,230 INFO 2026-06-03 20:55:23 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:56:36s. Time for last 1,000,000: 11s. Last read position: chr8:144,501,149 INFO 2026-06-03 20:55:38 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:56:51s. Time for last 1,000,000: 14s. Last read position: chr9:5,769,021 INFO 2026-06-03 20:55:51 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:57:04s. Time for last 1,000,000: 12s. Last read position: chr9:19,378,896 INFO 2026-06-03 20:55:58 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:57:11s. Time for last 1,000,000: 6s. Last read position: chr9:34,489,384 INFO 2026-06-03 20:56:07 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:57:21s. Time for last 1,000,000: 9s. Last read position: chr9:35,714,812 INFO 2026-06-03 20:56:14 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:57:27s. Time for last 1,000,000: 6s. Last read position: chr9:68,303,290 INFO 2026-06-03 20:56:25 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:57:38s. Time for last 1,000,000: 11s. Last read position: chr9:84,745,054 INFO 2026-06-03 20:56:36 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:57:50s. Time for last 1,000,000: 11s. Last read position: chr9:93,084,536 INFO 2026-06-03 20:56:43 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:57:56s. Time for last 1,000,000: 6s. Last read position: chr9:99,129,003 INFO 2026-06-03 20:56:57 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:58:10s. Time for last 1,000,000: 13s. Last read position: chr9:111,420,067 INFO 2026-06-03 20:57:06 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:58:19s. Time for last 1,000,000: 9s. Last read position: chr9:114,423,363 INFO 2026-06-03 20:57:18 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:58:32s. Time for last 1,000,000: 12s. Last read position: chr9:121,302,010 INFO 2026-06-03 20:57:27 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:58:41s. Time for last 1,000,000: 8s. Last read position: chr9:125,239,467 INFO 2026-06-03 20:57:38 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:58:51s. Time for last 1,000,000: 10s. Last read position: chr9:128,105,782 INFO 2026-06-03 20:57:57 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:59:10s. Time for last 1,000,000: 19s. Last read position: chr9:128,908,299 INFO 2026-06-03 20:58:05 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:59:18s. Time for last 1,000,000: 7s. Last read position: chr9:130,884,348 INFO 2026-06-03 20:58:14 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:59:27s. Time for last 1,000,000: 9s. Last read position: chr9:132,402,558 INFO 2026-06-03 20:58:22 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:59:35s. Time for last 1,000,000: 8s. Last read position: chr9:134,774,886 INFO 2026-06-03 20:58:35 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:59:49s. Time for last 1,000,000: 13s. Last read position: chr9:136,496,291 INFO 2026-06-03 20:58:51 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 01:00:04s. Time for last 1,000,000: 15s. Last read position: chr9:137,113,206 INFO 2026-06-03 20:59:01 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 01:00:15s. Time for last 1,000,000: 10s. Last read position: chr10:836,402 INFO 2026-06-03 20:59:13 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 01:00:27s. Time for last 1,000,000: 12s. Last read position: chr10:7,284,132 INFO 2026-06-03 20:59:21 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 01:00:34s. Time for last 1,000,000: 7s. Last read position: chr10:17,229,381 INFO 2026-06-03 20:59:33 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 01:00:46s. Time for last 1,000,000: 12s. Last read position: chr10:26,500,929 INFO 2026-06-03 20:59:46 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 01:00:59s. Time for last 1,000,000: 12s. Last read position: chr10:32,018,536 INFO 2026-06-03 21:00:02 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 01:01:15s. Time for last 1,000,000: 16s. Last read position: chr10:37,169,701 INFO 2026-06-03 21:00:08 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 01:01:21s. Time for last 1,000,000: 6s. Last read position: chr10:45,719,860 INFO 2026-06-03 21:00:13 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 01:01:27s. Time for last 1,000,000: 5s. Last read position: chr10:49,046,983 INFO 2026-06-03 21:00:22 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 01:01:36s. Time for last 1,000,000: 8s. Last read position: chr10:63,222,408 INFO 2026-06-03 21:00:33 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 01:01:46s. Time for last 1,000,000: 10s. Last read position: chr10:72,063,133 INFO 2026-06-03 21:00:44 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 01:01:57s. Time for last 1,000,000: 11s. Last read position: chr10:74,975,411 INFO 2026-06-03 21:01:03 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 01:02:16s. Time for last 1,000,000: 18s. Last read position: chr10:84,373,684 INFO 2026-06-03 21:01:09 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 01:02:23s. Time for last 1,000,000: 6s. Last read position: chr10:89,402,402 INFO 2026-06-03 21:01:23 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 01:02:36s. Time for last 1,000,000: 13s. Last read position: chr10:95,872,871 INFO 2026-06-03 21:01:31 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 01:02:45s. Time for last 1,000,000: 8s. Last read position: chr10:100,516,842 INFO 2026-06-03 21:01:50 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 01:03:04s. Time for last 1,000,000: 18s. Last read position: chr10:102,572,732 INFO 2026-06-03 21:01:59 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 01:03:12s. Time for last 1,000,000: 8s. Last read position: chr10:113,876,821 INFO 2026-06-03 21:02:07 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 01:03:20s. Time for last 1,000,000: 8s. Last read position: chr10:121,564,505 INFO 2026-06-03 21:02:14 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 01:03:28s. Time for last 1,000,000: 7s. Last read position: chr10:130,169,455 INFO 2026-06-03 21:02:22 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 01:03:35s. Time for last 1,000,000: 7s. Last read position: chr11:319,795 INFO 2026-06-03 21:02:31 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 01:03:45s. Time for last 1,000,000: 9s. Last read position: chr11:770,994 INFO 2026-06-03 21:02:39 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 01:03:52s. Time for last 1,000,000: 7s. Last read position: chr11:1,243,685 INFO 2026-06-03 21:02:44 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 01:03:57s. Time for last 1,000,000: 4s. Last read position: chr11:1,247,359 INFO 2026-06-03 21:02:50 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 01:04:03s. Time for last 1,000,000: 6s. Last read position: chr11:1,251,355 INFO 2026-06-03 21:03:01 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 01:04:14s. Time for last 1,000,000: 10s. Last read position: chr11:3,744,608 INFO 2026-06-03 21:03:12 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 01:04:26s. Time for last 1,000,000: 11s. Last read position: chr11:7,509,910 INFO 2026-06-03 21:03:29 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 01:04:42s. Time for last 1,000,000: 16s. Last read position: chr11:11,621,411 INFO 2026-06-03 21:03:39 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 01:04:52s. Time for last 1,000,000: 10s. Last read position: chr11:20,045,251 INFO 2026-06-03 21:03:49 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 01:05:02s. Time for last 1,000,000: 9s. Last read position: chr11:43,391,547 INFO 2026-06-03 21:04:01 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 01:05:14s. Time for last 1,000,000: 12s. Last read position: chr11:47,173,426 INFO 2026-06-03 21:04:12 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 01:05:25s. Time for last 1,000,000: 10s. Last read position: chr11:57,543,181 INFO 2026-06-03 21:04:26 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 01:05:39s. Time for last 1,000,000: 14s. Last read position: chr11:59,787,120 INFO 2026-06-03 21:04:39 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 01:05:52s. Time for last 1,000,000: 13s. Last read position: chr11:61,891,189 INFO 2026-06-03 21:04:43 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 01:05:57s. Time for last 1,000,000: 4s. Last read position: chr11:62,522,921 INFO 2026-06-03 21:04:47 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 01:06:00s. Time for last 1,000,000: 3s. Last read position: chr11:62,529,958 INFO 2026-06-03 21:04:53 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 01:06:06s. Time for last 1,000,000: 6s. Last read position: chr11:62,648,242 INFO 2026-06-03 21:05:03 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 01:06:16s. Time for last 1,000,000: 9s. Last read position: chr11:64,226,981 INFO 2026-06-03 21:05:12 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 01:06:25s. Time for last 1,000,000: 8s. Last read position: chr11:65,014,211 INFO 2026-06-03 21:05:22 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 01:06:35s. Time for last 1,000,000: 9s. Last read position: chr11:65,582,465 INFO 2026-06-03 21:05:31 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 01:06:44s. Time for last 1,000,000: 9s. Last read position: chr11:65,890,852 INFO 2026-06-03 21:05:39 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 01:06:52s. Time for last 1,000,000: 8s. Last read position: chr11:66,707,677 INFO 2026-06-03 21:05:50 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 01:07:04s. Time for last 1,000,000: 11s. Last read position: chr11:67,501,974 INFO 2026-06-03 21:06:00 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 01:07:13s. Time for last 1,000,000: 9s. Last read position: chr11:70,272,398 INFO 2026-06-03 21:06:18 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 01:07:31s. Time for last 1,000,000: 17s. Last read position: chr11:72,238,164 INFO 2026-06-03 21:06:38 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 01:07:52s. Time for last 1,000,000: 20s. Last read position: chr11:75,204,441 INFO 2026-06-03 21:06:49 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 01:08:02s. Time for last 1,000,000: 10s. Last read position: chr11:83,166,450 INFO 2026-06-03 21:07:03 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 01:08:17s. Time for last 1,000,000: 14s. Last read position: chr11:96,092,588 INFO 2026-06-03 21:07:18 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 01:08:32s. Time for last 1,000,000: 15s. Last read position: chr11:108,365,405 INFO 2026-06-03 21:07:29 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 01:08:42s. Time for last 1,000,000: 10s. Last read position: chr11:118,214,857 INFO 2026-06-03 21:07:39 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 01:08:52s. Time for last 1,000,000: 10s. Last read position: chr11:118,901,018 INFO 2026-06-03 21:07:49 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 01:09:02s. Time for last 1,000,000: 9s. Last read position: chr11:123,059,659 INFO 2026-06-03 21:07:58 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 01:09:11s. Time for last 1,000,000: 8s. Last read position: chr11:130,135,605 INFO 2026-06-03 21:08:11 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 01:09:24s. Time for last 1,000,000: 13s. Last read position: chr12:1,593,917 INFO 2026-06-03 21:08:24 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 01:09:38s. Time for last 1,000,000: 13s. Last read position: chr12:6,537,605 INFO 2026-06-03 21:08:50 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 01:10:04s. Time for last 1,000,000: 26s. Last read position: chr12:7,061,777 INFO 2026-06-03 21:09:00 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 01:10:13s. Time for last 1,000,000: 9s. Last read position: chr12:9,009,036 INFO 2026-06-03 21:09:07 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 01:10:20s. Time for last 1,000,000: 6s. Last read position: chr12:10,867,931 INFO 2026-06-03 21:09:14 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 01:10:27s. Time for last 1,000,000: 6s. Last read position: chr12:16,363,802 INFO 2026-06-03 21:09:25 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 01:10:38s. Time for last 1,000,000: 11s. Last read position: chr12:31,298,123 INFO 2026-06-03 21:09:37 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 01:10:50s. Time for last 1,000,000: 12s. Last read position: chr12:45,926,301 INFO 2026-06-03 21:09:48 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 01:11:01s. Time for last 1,000,000: 10s. Last read position: chr12:49,032,516 INFO 2026-06-03 21:09:54 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 01:11:08s. Time for last 1,000,000: 6s. Last read position: chr12:49,637,429 INFO 2026-06-03 21:10:05 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 01:11:18s. Time for last 1,000,000: 10s. Last read position: chr12:51,807,258 INFO 2026-06-03 21:10:15 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 01:11:29s. Time for last 1,000,000: 10s. Last read position: chr12:53,309,621 INFO 2026-06-03 21:10:31 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 01:11:45s. Time for last 1,000,000: 16s. Last read position: chr12:54,345,500 INFO 2026-06-03 21:10:43 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 01:11:56s. Time for last 1,000,000: 11s. Last read position: chr12:56,131,508 INFO 2026-06-03 21:10:58 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 01:12:11s. Time for last 1,000,000: 14s. Last read position: chr12:56,604,566 INFO 2026-06-03 21:11:10 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 01:12:23s. Time for last 1,000,000: 12s. Last read position: chr12:57,099,995 INFO 2026-06-03 21:11:26 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 01:12:39s. Time for last 1,000,000: 15s. Last read position: chr12:57,206,546 INFO 2026-06-03 21:11:40 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 01:12:53s. Time for last 1,000,000: 14s. Last read position: chr12:57,829,507 INFO 2026-06-03 21:11:51 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 01:13:05s. Time for last 1,000,000: 11s. Last read position: chr12:69,239,688 INFO 2026-06-03 21:12:05 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 01:13:18s. Time for last 1,000,000: 13s. Last read position: chr12:88,090,805 INFO 2026-06-03 21:12:14 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 01:13:28s. Time for last 1,000,000: 9s. Last read position: chr12:96,247,121 INFO 2026-06-03 21:12:29 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 01:13:42s. Time for last 1,000,000: 14s. Last read position: chr12:104,321,297 INFO 2026-06-03 21:12:37 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:13:50s. Time for last 1,000,000: 8s. Last read position: chr12:109,938,445 INFO 2026-06-03 21:12:52 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:14:05s. Time for last 1,000,000: 14s. Last read position: chr12:112,243,994 INFO 2026-06-03 21:13:12 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:14:25s. Time for last 1,000,000: 19s. Last read position: chr12:113,358,710 INFO 2026-06-03 21:13:24 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:14:37s. Time for last 1,000,000: 12s. Last read position: chr12:120,209,861 INFO 2026-06-03 21:13:33 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:14:46s. Time for last 1,000,000: 9s. Last read position: chr12:122,133,395 INFO 2026-06-03 21:13:44 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:14:57s. Time for last 1,000,000: 10s. Last read position: chr12:124,326,283 INFO 2026-06-03 21:13:59 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:15:13s. Time for last 1,000,000: 15s. Last read position: chr12:131,941,863 INFO 2026-06-03 21:14:09 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:15:22s. Time for last 1,000,000: 9s. Last read position: chr12:133,120,678 INFO 2026-06-03 21:14:16 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:15:29s. Time for last 1,000,000: 7s. Last read position: chr13:25,171,081 INFO 2026-06-03 21:14:27 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:15:40s. Time for last 1,000,000: 10s. Last read position: chr13:37,569,791 INFO 2026-06-03 21:14:35 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:15:48s. Time for last 1,000,000: 8s. Last read position: chr13:44,574,886 INFO 2026-06-03 21:14:44 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:15:58s. Time for last 1,000,000: 9s. Last read position: chr13:51,382,043 INFO 2026-06-03 21:14:58 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:16:11s. Time for last 1,000,000: 13s. Last read position: chr13:81,690,599 INFO 2026-06-03 21:15:12 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:16:25s. Time for last 1,000,000: 14s. Last read position: chr13:110,175,223 INFO 2026-06-03 21:15:24 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:16:38s. Time for last 1,000,000: 12s. Last read position: chr13:113,631,676 INFO 2026-06-03 21:15:38 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:16:52s. Time for last 1,000,000: 13s. Last read position: chr14:21,401,054 INFO 2026-06-03 21:15:50 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:17:03s. Time for last 1,000,000: 11s. Last read position: chr14:23,522,814 INFO 2026-06-03 21:16:01 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:17:15s. Time for last 1,000,000: 11s. Last read position: chr14:24,300,500 INFO 2026-06-03 21:16:20 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:17:33s. Time for last 1,000,000: 18s. Last read position: chr14:35,308,060 INFO 2026-06-03 21:16:28 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:17:42s. Time for last 1,000,000: 8s. Last read position: chr14:49,586,743 INFO 2026-06-03 21:16:37 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:17:50s. Time for last 1,000,000: 8s. Last read position: chr14:52,878,646 INFO 2026-06-03 21:16:50 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:18:04s. Time for last 1,000,000: 13s. Last read position: chr14:61,052,040 INFO 2026-06-03 21:17:46 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:18:59s. Time for last 1,000,000: 55s. Last read position: chr14:64,523,319 INFO 2026-06-03 21:18:00 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:19:13s. Time for last 1,000,000: 13s. Last read position: chr14:69,386,947 INFO 2026-06-03 21:18:11 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:19:24s. Time for last 1,000,000: 11s. Last read position: chr14:73,729,915 INFO 2026-06-03 21:18:22 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:19:36s. Time for last 1,000,000: 11s. Last read position: chr14:75,963,422 INFO 2026-06-03 21:18:34 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:19:47s. Time for last 1,000,000: 11s. Last read position: chr14:90,401,363 INFO 2026-06-03 21:18:43 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:19:56s. Time for last 1,000,000: 9s. Last read position: chr14:94,111,672 INFO 2026-06-03 21:18:57 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:20:10s. Time for last 1,000,000: 13s. Last read position: chr14:100,141,780 INFO 2026-06-03 21:21:32 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:22:45s. Time for last 1,000,000: 154s. Last read position: chr14:102,085,421 INFO 2026-06-03 21:22:08 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:23:22s. Time for last 1,000,000: 36s. Last read position: chr14:104,772,981 INFO 2026-06-03 21:22:22 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:23:35s. Time for last 1,000,000: 13s. Last read position: chr14:105,624,641 INFO 2026-06-03 21:22:24 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:23:38s. Time for last 1,000,000: 2s. Last read position: chr14:105,708,532 INFO 2026-06-03 21:22:26 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:23:40s. Time for last 1,000,000: 2s. Last read position: chr14:105,742,780 INFO 2026-06-03 21:22:29 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:23:42s. Time for last 1,000,000: 2s. Last read position: chr14:105,855,137 INFO 2026-06-03 21:23:13 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:24:27s. Time for last 1,000,000: 44s. Last read position: chr15:28,667,225 INFO 2026-06-03 21:23:29 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:24:42s. Time for last 1,000,000: 15s. Last read position: chr15:34,386,788 INFO 2026-06-03 21:23:40 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:24:53s. Time for last 1,000,000: 11s. Last read position: chr15:40,813,965 INFO 2026-06-03 21:24:00 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:25:13s. Time for last 1,000,000: 20s. Last read position: chr15:42,735,543 INFO 2026-06-03 21:24:16 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:25:29s. Time for last 1,000,000: 16s. Last read position: chr15:44,629,240 INFO 2026-06-03 21:24:37 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:25:51s. Time for last 1,000,000: 21s. Last read position: chr15:50,631,440 INFO 2026-06-03 21:24:58 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:26:12s. Time for last 1,000,000: 21s. Last read position: chr15:58,627,700 INFO 2026-06-03 21:25:35 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:26:48s. Time for last 1,000,000: 36s. Last read position: chr15:61,974,379 INFO 2026-06-03 21:26:11 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:27:25s. Time for last 1,000,000: 36s. Last read position: chr15:64,072,983 INFO 2026-06-03 21:26:22 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:27:36s. Time for last 1,000,000: 11s. Last read position: chr15:65,595,749 INFO 2026-06-03 21:26:39 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:27:52s. Time for last 1,000,000: 16s. Last read position: chr15:70,851,572 INFO 2026-06-03 21:26:57 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:28:10s. Time for last 1,000,000: 18s. Last read position: chr15:73,994,931 INFO 2026-06-03 21:27:15 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:28:28s. Time for last 1,000,000: 18s. Last read position: chr15:74,937,925 INFO 2026-06-03 21:27:31 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:28:45s. Time for last 1,000,000: 16s. Last read position: chr15:77,025,547 INFO 2026-06-03 21:27:49 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:29:02s. Time for last 1,000,000: 17s. Last read position: chr15:81,299,781 INFO 2026-06-03 21:27:56 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:29:09s. Time for last 1,000,000: 6s. Last read position: chr15:85,579,608 INFO 2026-06-03 21:28:13 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:29:26s. Time for last 1,000,000: 17s. Last read position: chr15:90,390,846 INFO 2026-06-03 21:28:29 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:29:43s. Time for last 1,000,000: 16s. Last read position: chr15:97,960,876 INFO 2026-06-03 21:28:42 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:29:56s. Time for last 1,000,000: 12s. Last read position: chr16:86,707 INFO 2026-06-03 21:29:02 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:30:16s. Time for last 1,000,000: 20s. Last read position: chr16:1,438,058 INFO 2026-06-03 21:29:33 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:30:46s. Time for last 1,000,000: 30s. Last read position: chr16:2,102,469 INFO 2026-06-03 21:29:51 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:31:04s. Time for last 1,000,000: 17s. Last read position: chr16:2,763,711 INFO 2026-06-03 21:30:03 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:31:16s. Time for last 1,000,000: 12s. Last read position: chr16:3,563,269 INFO 2026-06-03 21:30:15 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:31:28s. Time for last 1,000,000: 11s. Last read position: chr16:5,091,533 INFO 2026-06-03 21:30:25 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:31:38s. Time for last 1,000,000: 9s. Last read position: chr16:14,246,687 INFO 2026-06-03 21:30:36 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:31:49s. Time for last 1,000,000: 11s. Last read position: chr16:15,137,077 INFO 2026-06-03 21:30:48 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:32:01s. Time for last 1,000,000: 11s. Last read position: chr16:16,358,594 INFO 2026-06-03 21:30:51 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:32:04s. Time for last 1,000,000: 3s. Last read position: chr16:18,395,889 INFO 2026-06-03 21:31:02 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:32:15s. Time for last 1,000,000: 11s. Last read position: chr16:21,403,395 INFO 2026-06-03 21:31:05 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:32:19s. Time for last 1,000,000: 3s. Last read position: chr16:21,834,818 INFO 2026-06-03 21:31:11 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:32:24s. Time for last 1,000,000: 5s. Last read position: chr16:22,347,391 INFO 2026-06-03 21:31:16 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:32:29s. Time for last 1,000,000: 4s. Last read position: chr16:22,535,236 INFO 2026-06-03 21:31:25 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:32:38s. Time for last 1,000,000: 9s. Last read position: chr16:28,106,102 INFO 2026-06-03 21:31:40 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:32:54s. Time for last 1,000,000: 15s. Last read position: chr16:29,097,243 INFO 2026-06-03 21:31:43 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:32:56s. Time for last 1,000,000: 2s. Last read position: chr16:29,491,848 INFO 2026-06-03 21:31:51 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:33:04s. Time for last 1,000,000: 7s. Last read position: chr16:30,082,746 INFO 2026-06-03 21:31:54 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:33:08s. Time for last 1,000,000: 3s. Last read position: chr16:30,353,373 INFO 2026-06-03 21:32:10 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:33:23s. Time for last 1,000,000: 15s. Last read position: chr16:30,784,351 INFO 2026-06-03 21:32:21 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:33:34s. Time for last 1,000,000: 10s. Last read position: chr16:31,362,162 INFO 2026-06-03 21:32:36 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:33:49s. Time for last 1,000,000: 15s. Last read position: chr16:51,646,716 INFO 2026-06-03 21:32:53 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:34:06s. Time for last 1,000,000: 17s. Last read position: chr16:56,940,173 INFO 2026-06-03 21:33:29 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:34:42s. Time for last 1,000,000: 35s. Last read position: chr16:64,973,001 INFO 2026-06-03 21:33:45 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:34:59s. Time for last 1,000,000: 16s. Last read position: chr16:67,908,709 INFO 2026-06-03 21:33:55 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 01:35:09s. Time for last 1,000,000: 10s. Last read position: chr16:69,748,936 INFO 2026-06-03 21:34:13 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 01:35:26s. Time for last 1,000,000: 17s. Last read position: chr16:72,787,698 INFO 2026-06-03 21:34:24 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 01:35:37s. Time for last 1,000,000: 10s. Last read position: chr16:83,808,006 INFO 2026-06-03 21:34:31 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 01:35:44s. Time for last 1,000,000: 7s. Last read position: chr16:87,981,082 INFO 2026-06-03 21:34:39 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 01:35:52s. Time for last 1,000,000: 7s. Last read position: chr16:89,100,727 INFO 2026-06-03 21:35:02 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 01:36:15s. Time for last 1,000,000: 23s. Last read position: chr17:674,813 INFO 2026-06-03 21:35:15 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 01:36:28s. Time for last 1,000,000: 12s. Last read position: chr17:1,775,094 INFO 2026-06-03 21:35:25 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 01:36:39s. Time for last 1,000,000: 10s. Last read position: chr17:4,184,841 INFO 2026-06-03 21:35:36 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 01:36:49s. Time for last 1,000,000: 10s. Last read position: chr17:5,558,900 INFO 2026-06-03 21:35:45 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 01:36:59s. Time for last 1,000,000: 9s. Last read position: chr17:7,497,779 INFO 2026-06-03 21:35:57 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 01:37:10s. Time for last 1,000,000: 11s. Last read position: chr17:7,945,714 INFO 2026-06-03 21:36:10 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 01:37:24s. Time for last 1,000,000: 13s. Last read position: chr17:16,171,829 INFO 2026-06-03 21:36:22 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 01:37:35s. Time for last 1,000,000: 11s. Last read position: chr17:18,254,609 INFO 2026-06-03 21:36:31 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 01:37:45s. Time for last 1,000,000: 9s. Last read position: chr17:28,396,188 INFO 2026-06-03 21:36:43 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 01:37:56s. Time for last 1,000,000: 11s. Last read position: chr17:29,534,122 INFO 2026-06-03 21:36:58 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 01:38:12s. Time for last 1,000,000: 15s. Last read position: chr17:32,369,651 INFO 2026-06-03 21:37:09 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 01:38:22s. Time for last 1,000,000: 10s. Last read position: chr17:35,878,600 INFO 2026-06-03 21:37:17 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 01:38:31s. Time for last 1,000,000: 8s. Last read position: chr17:38,008,696 INFO 2026-06-03 21:37:22 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 01:38:36s. Time for last 1,000,000: 4s. Last read position: chr17:38,719,771 INFO 2026-06-03 21:37:27 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 01:38:41s. Time for last 1,000,000: 5s. Last read position: chr17:38,878,175 INFO 2026-06-03 21:37:34 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 01:38:47s. Time for last 1,000,000: 6s. Last read position: chr17:39,517,484 INFO 2026-06-03 21:37:46 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 01:38:59s. Time for last 1,000,000: 12s. Last read position: chr17:39,709,756 INFO 2026-06-03 21:38:03 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 01:39:16s. Time for last 1,000,000: 17s. Last read position: chr17:39,715,780 INFO 2026-06-03 21:38:29 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 01:39:43s. Time for last 1,000,000: 26s. Last read position: chr17:39,723,618 INFO 2026-06-03 21:39:01 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 01:40:15s. Time for last 1,000,000: 32s. Last read position: chr17:39,727,359 INFO 2026-06-03 21:39:22 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 01:40:35s. Time for last 1,000,000: 20s. Last read position: chr17:40,088,440 INFO 2026-06-03 21:39:28 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 01:40:41s. Time for last 1,000,000: 6s. Last read position: chr17:41,523,960 INFO 2026-06-03 21:39:40 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 01:40:53s. Time for last 1,000,000: 11s. Last read position: chr17:42,329,616 INFO 2026-06-03 21:39:54 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 01:41:07s. Time for last 1,000,000: 14s. Last read position: chr17:44,091,725 INFO 2026-06-03 21:40:05 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 01:41:18s. Time for last 1,000,000: 10s. Last read position: chr17:45,513,965 INFO 2026-06-03 21:40:14 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 01:41:27s. Time for last 1,000,000: 9s. Last read position: chr17:47,612,510 INFO 2026-06-03 21:40:24 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 01:41:38s. Time for last 1,000,000: 10s. Last read position: chr17:49,707,756 INFO 2026-06-03 21:40:30 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 01:41:43s. Time for last 1,000,000: 5s. Last read position: chr17:50,187,014 INFO 2026-06-03 21:40:35 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 01:41:48s. Time for last 1,000,000: 5s. Last read position: chr17:50,188,987 INFO 2026-06-03 21:40:41 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 01:41:54s. Time for last 1,000,000: 6s. Last read position: chr17:50,190,827 INFO 2026-06-03 21:40:49 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 01:42:02s. Time for last 1,000,000: 7s. Last read position: chr17:50,193,961 INFO 2026-06-03 21:40:59 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 01:42:12s. Time for last 1,000,000: 10s. Last read position: chr17:50,195,457 INFO 2026-06-03 21:41:10 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 01:42:24s. Time for last 1,000,000: 11s. Last read position: chr17:50,197,049 INFO 2026-06-03 21:41:24 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 01:42:37s. Time for last 1,000,000: 13s. Last read position: chr17:50,199,918 INFO 2026-06-03 21:41:35 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 01:42:48s. Time for last 1,000,000: 10s. Last read position: chr17:57,974,504 INFO 2026-06-03 21:41:42 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 01:42:55s. Time for last 1,000,000: 7s. Last read position: chr17:59,647,522 INFO 2026-06-03 21:41:51 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 01:43:04s. Time for last 1,000,000: 9s. Last read position: chr17:59,668,803 INFO 2026-06-03 21:42:06 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 01:43:19s. Time for last 1,000,000: 15s. Last read position: chr17:59,683,107 INFO 2026-06-03 21:42:24 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 01:43:37s. Time for last 1,000,000: 17s. Last read position: chr17:60,049,654 INFO 2026-06-03 21:42:33 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 01:43:46s. Time for last 1,000,000: 8s. Last read position: chr17:62,552,307 INFO 2026-06-03 21:42:45 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 01:43:58s. Time for last 1,000,000: 12s. Last read position: chr17:64,153,113 INFO 2026-06-03 21:43:03 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 01:44:17s. Time for last 1,000,000: 18s. Last read position: chr17:64,821,808 INFO 2026-06-03 21:43:14 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 01:44:28s. Time for last 1,000,000: 11s. Last read position: chr17:68,037,363 INFO 2026-06-03 21:43:28 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 01:44:42s. Time for last 1,000,000: 13s. Last read position: chr17:73,201,641 INFO 2026-06-03 21:43:38 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 01:44:51s. Time for last 1,000,000: 9s. Last read position: chr17:75,589,862 INFO 2026-06-03 21:43:52 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 01:45:05s. Time for last 1,000,000: 14s. Last read position: chr17:76,570,602 INFO 2026-06-03 21:44:05 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 01:45:18s. Time for last 1,000,000: 12s. Last read position: chr17:78,798,998 INFO 2026-06-03 21:44:11 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 01:45:24s. Time for last 1,000,000: 6s. Last read position: chr17:80,039,911 INFO 2026-06-03 21:44:21 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 01:45:34s. Time for last 1,000,000: 9s. Last read position: chr17:80,295,716 INFO 2026-06-03 21:44:40 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 01:45:53s. Time for last 1,000,000: 18s. Last read position: chr17:80,345,990 INFO 2026-06-03 21:45:04 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 01:46:17s. Time for last 1,000,000: 24s. Last read position: chr17:80,376,912 INFO 2026-06-03 21:45:23 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 01:46:37s. Time for last 1,000,000: 19s. Last read position: chr17:81,700,497 INFO 2026-06-03 21:45:42 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 01:46:55s. Time for last 1,000,000: 18s. Last read position: chr17:82,084,370 INFO 2026-06-03 21:45:54 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 01:47:07s. Time for last 1,000,000: 11s. Last read position: chr17:82,586,060 INFO 2026-06-03 21:46:05 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 01:47:18s. Time for last 1,000,000: 11s. Last read position: chr18:8,706,350 INFO 2026-06-03 21:46:14 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 01:47:28s. Time for last 1,000,000: 9s. Last read position: chr18:23,518,893 INFO 2026-06-03 21:46:27 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 01:47:40s. Time for last 1,000,000: 12s. Last read position: chr18:36,171,065 INFO 2026-06-03 21:46:41 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 01:47:54s. Time for last 1,000,000: 13s. Last read position: chr18:55,275,709 INFO 2026-06-03 21:46:58 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 01:48:12s. Time for last 1,000,000: 17s. Last read position: chr18:74,263,377 INFO 2026-06-03 21:47:07 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 01:48:21s. Time for last 1,000,000: 8s. Last read position: chr19:902,016 INFO 2026-06-03 21:47:20 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 01:48:33s. Time for last 1,000,000: 12s. Last read position: chr19:1,272,440 INFO 2026-06-03 21:47:28 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 01:48:41s. Time for last 1,000,000: 7s. Last read position: chr19:2,243,530 INFO 2026-06-03 21:47:34 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 01:48:47s. Time for last 1,000,000: 6s. Last read position: chr19:4,054,722 INFO 2026-06-03 21:47:43 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 01:48:56s. Time for last 1,000,000: 8s. Last read position: chr19:5,789,390 INFO 2026-06-03 21:47:51 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 01:49:05s. Time for last 1,000,000: 8s. Last read position: chr19:6,713,487 INFO 2026-06-03 21:48:00 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 01:49:14s. Time for last 1,000,000: 8s. Last read position: chr19:8,455,535 INFO 2026-06-03 21:48:13 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 01:49:27s. Time for last 1,000,000: 12s. Last read position: chr19:10,119,112 INFO 2026-06-03 21:48:36 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 01:49:50s. Time for last 1,000,000: 23s. Last read position: chr19:11,033,301 INFO 2026-06-03 21:48:52 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 01:50:05s. Time for last 1,000,000: 15s. Last read position: chr19:12,731,040 INFO 2026-06-03 21:49:00 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 01:50:13s. Time for last 1,000,000: 7s. Last read position: chr19:14,397,712 INFO 2026-06-03 21:49:07 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 01:50:21s. Time for last 1,000,000: 7s. Last read position: chr19:15,254,231 INFO 2026-06-03 21:49:19 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 01:50:32s. Time for last 1,000,000: 11s. Last read position: chr19:17,102,347 INFO 2026-06-03 21:49:30 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 01:50:43s. Time for last 1,000,000: 10s. Last read position: chr19:18,134,689 INFO 2026-06-03 21:49:41 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 01:50:54s. Time for last 1,000,000: 11s. Last read position: chr19:19,146,809 INFO 2026-06-03 21:49:46 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 01:51:00s. Time for last 1,000,000: 5s. Last read position: chr19:33,206,079 INFO 2026-06-03 21:49:56 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 01:51:09s. Time for last 1,000,000: 9s. Last read position: chr19:35,716,595 INFO 2026-06-03 21:50:05 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 01:51:18s. Time for last 1,000,000: 8s. Last read position: chr19:38,283,753 INFO 2026-06-03 21:50:13 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 01:51:27s. Time for last 1,000,000: 8s. Last read position: chr19:39,408,366 INFO 2026-06-03 21:50:25 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 01:51:39s. Time for last 1,000,000: 11s. Last read position: chr19:40,588,684 INFO 2026-06-03 21:50:36 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 01:51:50s. Time for last 1,000,000: 10s. Last read position: chr19:41,755,672 INFO 2026-06-03 21:50:47 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 01:52:00s. Time for last 1,000,000: 10s. Last read position: chr19:42,232,098 INFO 2026-06-03 21:50:54 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 01:52:08s. Time for last 1,000,000: 7s. Last read position: chr19:43,596,707 INFO 2026-06-03 21:51:00 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 01:52:13s. Time for last 1,000,000: 5s. Last read position: chr19:45,164,176 INFO 2026-06-03 21:51:08 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 01:52:22s. Time for last 1,000,000: 8s. Last read position: chr19:46,918,826 INFO 2026-06-03 21:51:16 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 01:52:29s. Time for last 1,000,000: 7s. Last read position: chr19:48,473,965 INFO 2026-06-03 21:51:24 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 01:52:37s. Time for last 1,000,000: 8s. Last read position: chr19:49,468,454 INFO 2026-06-03 21:51:31 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 01:52:45s. Time for last 1,000,000: 7s. Last read position: chr19:49,805,720 INFO 2026-06-03 21:51:46 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 01:52:59s. Time for last 1,000,000: 14s. Last read position: chr19:51,372,463 INFO 2026-06-03 21:51:52 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 01:53:05s. Time for last 1,000,000: 5s. Last read position: chr19:54,158,391 INFO 2026-06-03 21:52:01 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 01:53:14s. Time for last 1,000,000: 9s. Last read position: chr19:55,239,451 INFO 2026-06-03 21:52:06 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 01:53:19s. Time for last 1,000,000: 4s. Last read position: chr19:57,552,356 INFO 2026-06-03 21:52:11 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 01:53:24s. Time for last 1,000,000: 4s. Last read position: chr19:58,549,125 INFO 2026-06-03 21:52:20 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 01:53:33s. Time for last 1,000,000: 8s. Last read position: chr20:3,166,769 INFO 2026-06-03 21:52:26 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 01:53:39s. Time for last 1,000,000: 6s. Last read position: chr20:13,776,010 INFO 2026-06-03 21:52:34 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 01:53:48s. Time for last 1,000,000: 8s. Last read position: chr20:23,826,445 INFO 2026-06-03 21:52:44 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 01:53:57s. Time for last 1,000,000: 9s. Last read position: chr20:32,428,346 INFO 2026-06-03 21:52:56 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 01:54:09s. Time for last 1,000,000: 11s. Last read position: chr20:34,757,475 INFO 2026-06-03 21:53:05 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 01:54:19s. Time for last 1,000,000: 9s. Last read position: chr20:35,542,095 INFO 2026-06-03 21:53:25 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 01:54:38s. Time for last 1,000,000: 19s. Last read position: chr20:35,714,200 INFO 2026-06-03 21:53:42 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 01:54:55s. Time for last 1,000,000: 16s. Last read position: chr20:37,203,913 INFO 2026-06-03 21:53:50 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 01:55:03s. Time for last 1,000,000: 8s. Last read position: chr20:41,165,343 INFO 2026-06-03 21:53:57 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 01:55:10s. Time for last 1,000,000: 6s. Last read position: chr20:45,416,160 INFO 2026-06-03 21:54:11 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 01:55:24s. Time for last 1,000,000: 13s. Last read position: chr20:47,652,417 INFO 2026-06-03 21:54:24 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 01:55:37s. Time for last 1,000,000: 12s. Last read position: chr20:49,238,978 INFO 2026-06-03 21:54:29 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 01:55:42s. Time for last 1,000,000: 4s. Last read position: chr20:50,892,857 INFO 2026-06-03 21:54:33 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 01:55:47s. Time for last 1,000,000: 4s. Last read position: chr20:56,365,137 INFO 2026-06-03 21:54:53 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 01:56:07s. Time for last 1,000,000: 20s. Last read position: chr20:58,981,344 INFO 2026-06-03 21:55:03 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 01:56:17s. Time for last 1,000,000: 9s. Last read position: chr20:62,333,590 INFO 2026-06-03 21:55:10 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 01:56:23s. Time for last 1,000,000: 6s. Last read position: chr20:63,287,611 INFO 2026-06-03 21:55:17 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 01:56:30s. Time for last 1,000,000: 6s. Last read position: chr20:63,697,023 INFO 2026-06-03 21:55:21 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 01:56:34s. Time for last 1,000,000: 4s. Last read position: chr21:8,207,090 INFO 2026-06-03 21:55:22 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 01:56:35s. Time for last 1,000,000: 0s. Last read position: chr21:8,399,960 INFO 2026-06-03 21:55:24 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 01:56:38s. Time for last 1,000,000: 2s. Last read position: chr21:25,982,403 INFO 2026-06-03 21:55:34 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 01:56:47s. Time for last 1,000,000: 9s. Last read position: chr21:33,557,162 INFO 2026-06-03 21:55:52 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 01:57:06s. Time for last 1,000,000: 18s. Last read position: chr21:39,348,547 INFO 2026-06-03 21:56:15 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 01:57:28s. Time for last 1,000,000: 22s. Last read position: chr21:44,231,380 INFO 2026-06-03 21:56:27 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 01:57:40s. Time for last 1,000,000: 11s. Last read position: chr21:45,992,028 INFO 2026-06-03 21:56:37 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 01:57:50s. Time for last 1,000,000: 10s. Last read position: chr21:46,126,176 INFO 2026-06-03 21:56:48 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 01:58:02s. Time for last 1,000,000: 11s. Last read position: chr22:19,385,671 INFO 2026-06-03 21:56:59 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 01:58:13s. Time for last 1,000,000: 11s. Last read position: chr22:21,387,553 INFO 2026-06-03 21:57:09 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 01:58:22s. Time for last 1,000,000: 9s. Last read position: chr22:23,800,983 INFO 2026-06-03 21:57:18 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 01:58:31s. Time for last 1,000,000: 9s. Last read position: chr22:28,795,280 INFO 2026-06-03 21:57:31 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 01:58:44s. Time for last 1,000,000: 12s. Last read position: chr22:29,299,276 INFO 2026-06-03 21:57:43 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 01:58:56s. Time for last 1,000,000: 12s. Last read position: chr22:31,099,863 INFO 2026-06-03 21:58:00 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 01:59:14s. Time for last 1,000,000: 17s. Last read position: chr22:35,419,896 INFO 2026-06-03 21:58:06 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 01:59:19s. Time for last 1,000,000: 5s. Last read position: chr22:36,305,974 INFO 2026-06-03 21:58:12 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 01:59:25s. Time for last 1,000,000: 6s. Last read position: chr22:37,303,296 INFO 2026-06-03 21:58:20 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 01:59:34s. Time for last 1,000,000: 8s. Last read position: chr22:38,485,908 INFO 2026-06-03 21:58:26 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 01:59:39s. Time for last 1,000,000: 5s. Last read position: chr22:39,521,658 INFO 2026-06-03 21:58:35 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 01:59:48s. Time for last 1,000,000: 8s. Last read position: chr22:41,436,597 INFO 2026-06-03 21:58:42 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 01:59:56s. Time for last 1,000,000: 7s. Last read position: chr22:42,693,730 INFO 2026-06-03 21:58:52 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 02:00:05s. Time for last 1,000,000: 9s. Last read position: chr22:46,536,519 INFO 2026-06-03 21:59:02 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 02:00:15s. Time for last 1,000,000: 10s. Last read position: chr22:50,290,046 INFO 2026-06-03 21:59:12 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 02:00:25s. Time for last 1,000,000: 9s. Last read position: chr22:50,547,876 INFO 2026-06-03 21:59:15 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 02:00:28s. Time for last 1,000,000: 2s. Last read position: chrX:3,321,547 INFO 2026-06-03 21:59:20 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 02:00:34s. Time for last 1,000,000: 5s. Last read position: chrX:17,801,416 INFO 2026-06-03 21:59:32 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 02:00:45s. Time for last 1,000,000: 11s. Last read position: chrX:40,064,516 INFO 2026-06-03 22:00:03 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 02:01:16s. Time for last 1,000,000: 31s. Last read position: chrX:47,185,428 INFO 2026-06-03 22:00:12 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 02:01:26s. Time for last 1,000,000: 9s. Last read position: chrX:49,033,495 INFO 2026-06-03 22:00:22 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 02:01:35s. Time for last 1,000,000: 9s. Last read position: chrX:53,559,034 INFO 2026-06-03 22:00:38 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 02:01:51s. Time for last 1,000,000: 15s. Last read position: chrX:68,513,330 INFO 2026-06-03 22:00:50 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 02:02:03s. Time for last 1,000,000: 11s. Last read position: chrX:72,208,417 INFO 2026-06-03 22:01:04 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 02:02:17s. Time for last 1,000,000: 13s. Last read position: chrX:81,277,157 INFO 2026-06-03 22:01:11 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 02:02:24s. Time for last 1,000,000: 7s. Last read position: chrX:114,702,175 INFO 2026-06-03 22:01:23 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 02:02:36s. Time for last 1,000,000: 11s. Last read position: chrX:130,028,736 INFO 2026-06-03 22:01:30 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 02:02:44s. Time for last 1,000,000: 7s. Last read position: chrX:153,506,880 INFO 2026-06-03 22:01:42 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 02:02:55s. Time for last 1,000,000: 11s. Last read position: chrX:154,354,154 INFO 2026-06-03 22:02:14 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 02:03:27s. Time for last 1,000,000: 31s. Last read position: chrX:154,466,622 INFO 2026-06-03 22:02:17 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 02:03:30s. Time for last 1,000,000: 3s. Last read position: GL000220.1:115,497 INFO 2026-06-03 22:02:17 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 02:03:31s. Time for last 1,000,000: 0s. Last read position: KI270733.1:131,019 INFO 2026-06-03 22:02:18 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 02:03:31s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-06-03 22:02:19 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 02:03:32s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-06-03 22:02:20 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 02:03:33s. Time for last 1,000,000: 0s. Last read position: */* [Wed Jun 03 22:02:21 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 123.64 minutes. Runtime.totalMemory()=3341287424