File Info

Filename
aih-tih-sc-28eb14-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/656f8edff1e3674d630472541a32b6/aih-tih-sc-28eb14-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 19:08:26
                             Started mapping on |	Jun 03 19:10:33
                                    Finished on |	Jun 03 20:27:03
       Mapping speed, Million of reads per hour |	232.72

                          Number of input reads |	296714219
                      Average input read length |	258
                                    UNIQUE READS:
                   Uniquely mapped reads number |	284647568
                        Uniquely mapped reads % |	95.93%
                          Average mapped length |	258.55
                       Number of splices: Total |	326658513
            Number of splices: Annotated (sjdb) |	323010484
                       Number of splices: GT/AG |	323267993
                       Number of splices: GC/AG |	2476968
                       Number of splices: AT/AC |	309031
               Number of splices: Non-canonical |	604521
                      Mismatch rate per base, % |	0.22%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.09
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.60
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7620503
             % of reads mapped to multiple loci |	2.57%
        Number of reads mapped to too many loci |	216558
             % of reads mapped to too many loci |	0.07%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	455701
       % of reads unmapped: too many mismatches |	0.15%
            Number of reads unmapped: too short |	1928905
                 % of reads unmapped: too short |	0.65%
                Number of reads unmapped: other |	182749
                     % of reads unmapped: other |	0.06%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3085356
                            % of chimeric reads |	1.04%