Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/f46c446ee3afbc48176b612ea190de/aih-tih-sc-3270ab-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/42b8ac51a1d1a048de904b94d3aef2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/42b8ac51a1d1a048de904b94d3aef2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/b41a656e5398795a74f124141c742a/aih-tih-sc-3270ab-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-3270ab-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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