File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/e7f467f8fd92d1c1aefeece6b72a08/.command.log
Size
6.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-656590-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/e7f467f8fd92d1c1aefeece6b72a08/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/e7f467f8fd92d1c1aefeece6b72a08/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/d279039c49743ed049102afdd61de6/aih-tih-sc-656590-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/9c60c4f168706e28b3929680b14480/aih-tih-sc-656590-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
NFX1--ARNT2
starfusion
arriba
AC079160.1--GRID2
starfusion
arriba
KIF24--NOL6
starfusion
arriba
PIGO--B4GALT1
starfusion
arriba
AC138035.1--SEPTIN14
starfusion
TLK2--AC240565.1
starfusion
C20orf197--NOL4L
starfusion
arriba
AMDHD1--ACAD11
starfusion
AC008496.2--MRPL15
starfusion
RNASE10--STON2
starfusion
RNASE10--CD38
starfusion
GNAI2P1--ATF7IP
arriba
RPL30P11--ATF7IP
arriba
FA2H--FA2H
arriba
AC009132.1--FA2H
arriba
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
ARHGAP12--FOLR3
arriba
RPL34P19--FOLR3
arriba
DDX58--AL355377.4
arriba
IGFL1P2--HIF3A
arriba
AP1B1--AL929601.3
arriba
UNC13B--B4GALT1
arriba
AC010904.1--ZC3H7B
arriba
AC013460.1--ZC3H7B
arriba
TLK2--FAM157A
arriba
LINC00923--ARNT2
arriba

  0%|          | 0/27 [00:00<?, ?it/s]
Processing NFX1--ARNT2:   0%|          | 0/27 [00:00<?, ?it/s]
Processing NFX1--ARNT2:   4%|▎         | 1/27 [00:00<00:02,  8.77it/s]
Processing AC079160.1--GRID2:   4%|▎         | 1/27 [00:00<00:02,  8.77it/s]
Processing AC079160.1--GRID2:   7%|▋         | 2/27 [00:00<00:02,  9.12it/s]
Processing KIF24--NOL6:   7%|▋         | 2/27 [00:00<00:02,  9.12it/s]      
Processing KIF24--NOL6:  11%|█         | 3/27 [00:00<00:02,  9.26it/s]
Processing PIGO--B4GALT1:  11%|█         | 3/27 [00:00<00:02,  9.26it/s]
Processing PIGO--B4GALT1:  15%|█▍        | 4/27 [00:00<00:02,  9.33it/s]
Processing AC138035.1--SEPTIN14:  15%|█▍        | 4/27 [00:00<00:02,  9.33it/s]
Processing AC138035.1--SEPTIN14:  19%|█▊        | 5/27 [00:00<00:02,  9.38it/s]
Processing TLK2--AC240565.1:  19%|█▊        | 5/27 [00:00<00:02,  9.38it/s]    
Processing TLK2--AC240565.1:  22%|██▏       | 6/27 [00:00<00:02,  9.40it/s]
Processing C20orf197--NOL4L:  22%|██▏       | 6/27 [00:00<00:02,  9.40it/s]
Processing C20orf197--NOL4L:  26%|██▌       | 7/27 [00:00<00:02,  9.42it/s]
Processing AMDHD1--ACAD11:  26%|██▌       | 7/27 [00:00<00:02,  9.42it/s]  
Processing AMDHD1--ACAD11:  30%|██▉       | 8/27 [00:00<00:02,  9.43it/s]
Processing AC008496.2--MRPL15:  30%|██▉       | 8/27 [00:00<00:02,  9.43it/s]
Processing AC008496.2--MRPL15:  33%|███▎      | 9/27 [00:00<00:01,  9.44it/s]
Processing RNASE10--STON2:  33%|███▎      | 9/27 [00:00<00:01,  9.44it/s]    
Processing RNASE10--STON2:  37%|███▋      | 10/27 [00:01<00:01,  9.45it/s]
Processing RNASE10--CD38:  37%|███▋      | 10/27 [00:01<00:01,  9.45it/s] 
Processing RNASE10--CD38:  41%|████      | 11/27 [00:01<00:01,  9.44it/s]
Processing GNAI2P1--ATF7IP:  41%|████      | 11/27 [00:01<00:01,  9.44it/s]
Processing GNAI2P1--ATF7IP:  44%|████▍     | 12/27 [00:01<00:01,  9.44it/s]
Processing RPL30P11--ATF7IP:  44%|████▍     | 12/27 [00:01<00:01,  9.44it/s]
Processing RPL30P11--ATF7IP:  48%|████▊     | 13/27 [00:01<00:01,  9.44it/s]
Processing FA2H--FA2H:  48%|████▊     | 13/27 [00:01<00:01,  9.44it/s]      
Processing FA2H--FA2H:  52%|█████▏    | 14/27 [00:01<00:01,  9.45it/s]
Processing AC009132.1--FA2H:  52%|█████▏    | 14/27 [00:01<00:01,  9.45it/s]
Processing AC009132.1--FA2H:  56%|█████▌    | 15/27 [00:01<00:01,  9.45it/s]
Processing STX16--NPEPL1:  56%|█████▌    | 15/27 [00:01<00:01,  9.45it/s]   
Processing STX16--NPEPL1:  59%|█████▉    | 16/27 [00:01<00:01,  9.46it/s]
Processing TVP23C--CDRT4:  59%|█████▉    | 16/27 [00:01<00:01,  9.46it/s]
Processing TVP23C--CDRT4:  63%|██████▎   | 17/27 [00:01<00:01,  9.46it/s]
Processing ARHGAP12--FOLR3:  63%|██████▎   | 17/27 [00:01<00:01,  9.46it/s]
Processing ARHGAP12--FOLR3:  67%|██████▋   | 18/27 [00:01<00:00,  9.46it/s]
Processing RPL34P19--FOLR3:  67%|██████▋   | 18/27 [00:01<00:00,  9.46it/s]
Processing RPL34P19--FOLR3:  70%|███████   | 19/27 [00:02<00:00,  9.46it/s]
Processing DDX58--AL355377.4:  70%|███████   | 19/27 [00:02<00:00,  9.46it/s]
Processing DDX58--AL355377.4:  74%|███████▍  | 20/27 [00:02<00:00,  9.46it/s]
Processing IGFL1P2--HIF3A:  74%|███████▍  | 20/27 [00:02<00:00,  9.46it/s]   
Processing IGFL1P2--HIF3A:  78%|███████▊  | 21/27 [00:02<00:00,  9.44it/s]
Processing AP1B1--AL929601.3:  78%|███████▊  | 21/27 [00:02<00:00,  9.44it/s]
Processing AP1B1--AL929601.3:  81%|████████▏ | 22/27 [00:02<00:00,  9.45it/s]
Processing UNC13B--B4GALT1:  81%|████████▏ | 22/27 [00:02<00:00,  9.45it/s]  
Processing UNC13B--B4GALT1:  85%|████████▌ | 23/27 [00:02<00:00,  9.45it/s]
Processing AC010904.1--ZC3H7B:  85%|████████▌ | 23/27 [00:02<00:00,  9.45it/s]
Processing AC010904.1--ZC3H7B:  89%|████████▉ | 24/27 [00:02<00:00,  9.45it/s]
Processing AC013460.1--ZC3H7B:  89%|████████▉ | 24/27 [00:02<00:00,  9.45it/s]
Processing AC013460.1--ZC3H7B:  93%|█████████▎| 25/27 [00:02<00:00,  9.45it/s]
Processing TLK2--FAM157A:  93%|█████████▎| 25/27 [00:02<00:00,  9.45it/s]     
Processing TLK2--FAM157A:  96%|█████████▋| 26/27 [00:02<00:00,  9.46it/s]
Processing LINC00923--ARNT2:  96%|█████████▋| 26/27 [00:02<00:00,  9.46it/s]
Processing LINC00923--ARNT2: 100%|██████████| 27/27 [00:02<00:00,  9.46it/s]
Processing LINC00923--ARNT2: 100%|██████████| 27/27 [00:02<00:00,  9.42it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory