File Info
- Filename
- aih-tih-sc-656590-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/e7f467f8fd92d1c1aefeece6b72a08/aih-tih-sc-656590-R1_A23YTGFLT4_1.fusions.csv
- Size
- 6.2 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-656590-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| NFX1--ARNT2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr9:33328678#chr15:80442837,reading-frame: out-of-frame,type: translocation,split_reads1: 63,split_reads2: 33,discordant_mates: 3,coverage1: 1581,coverage2: 46,confidence: high | position: chr9:33328678:+#chr15:80442837:+,junction_reads: 101,spanning_reads: 3,ffmp: 0.3885 | |
| AC079160.1--GRID2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr4:84243111#chr4:93084995,reading-frame: .,type: inversion,split_reads1: 26,split_reads2: 43,discordant_mates: 2,coverage1: 34,coverage2: 188,confidence: high | position: chr4:84243111:-#chr4:93084995:+,junction_reads: 77,spanning_reads: 3,ffmp: 0.2988 | |
| KIF24--NOL6 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr9:34306252#chr9:33472412,reading-frame: in-frame,type: deletion,split_reads1: 22,split_reads2: 28,discordant_mates: 0,coverage1: 158,coverage2: 2213,confidence: high | position: chr9:34306252:-#chr9:33472412:-,junction_reads: 52,spanning_reads: 0,ffmp: 0.1943 | |
| PIGO--B4GALT1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr9:35091775#chr9:33160922,reading-frame: out-of-frame,type: deletion,split_reads1: 301,split_reads2: 56,discordant_mates: 8,coverage1: 3885,coverage2: 67,confidence: high | position: chr9:35095055:-#chr9:33135424:-,junction_reads: 41,spanning_reads: 0,ffmp: 0.1532 | |
| AC138035.1--SEPTIN14 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:181317395:+#chr7:55796092:-,junction_reads: 30,spanning_reads: 0,ffmp: 0.1121 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 28,spanning_reads: 0,ffmp: 0.0475 | ||
| C20orf197--NOL4L | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:60056008#chr20:32527913,reading-frame: .,type: inversion,split_reads1: 2,split_reads2: 14,discordant_mates: 0,coverage1: 2,coverage2: 359,confidence: high | position: chr20:60056008:+#chr20:32527913:-,junction_reads: 16,spanning_reads: 0,ffmp: 0.0598 | |
| AMDHD1--ACAD11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:95947437:+#chr3:132577015:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0374 | ||
| AC008496.2--MRPL15 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:79777995:-#chr8:54136511:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.0336 | ||
| RNASE10--STON2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr14:20506019:+#chr14:81278739:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0299 | ||
| RNASE10--CD38 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr14:20506056:+#chr4:15816511:+,junction_reads: 8,spanning_reads: 0,ffmp: 0.0299 | |
| GNAI2P1--ATF7IP | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:14354815#chr12:14423909,reading-frame: .,type: deletion/read-through,split_reads1: 12,split_reads2: 102,discordant_mates: 3,coverage1: 164,coverage2: 2369,confidence: high | ||
| RPL30P11--ATF7IP | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:14354815#chr12:14423909,reading-frame: .,type: deletion/read-through,split_reads1: 12,split_reads2: 102,discordant_mates: 3,coverage1: 164,coverage2: 2369,confidence: high | ||
| FA2H--FA2H | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:74799358#chr16:74740115,reading-frame: .,type: deletion/read-through,split_reads1: 19,split_reads2: 51,discordant_mates: 3,coverage1: 139,coverage2: 799,confidence: high | ||
| AC009132.1--FA2H | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:74799358#chr16:74740115,reading-frame: .,type: deletion/read-through,split_reads1: 19,split_reads2: 51,discordant_mates: 3,coverage1: 139,coverage2: 799,confidence: high | ||
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 29,split_reads2: 32,discordant_mates: 3,coverage1: 1844,coverage2: 345,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 34,split_reads2: 24,discordant_mates: 1,coverage1: 553,coverage2: 247,confidence: high | |
| ARHGAP12--FOLR3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:31969903#chr11:72135947,reading-frame: .,type: translocation,split_reads1: 9,split_reads2: 33,discordant_mates: 1,coverage1: 14,coverage2: 2001,confidence: high | ||
| RPL34P19--FOLR3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:31969903#chr11:72135947,reading-frame: .,type: translocation,split_reads1: 9,split_reads2: 33,discordant_mates: 1,coverage1: 14,coverage2: 2001,confidence: high | ||
| DDX58--AL355377.4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:32459371#chr9:35024754,reading-frame: out-of-frame,type: duplication,split_reads1: 17,split_reads2: 22,discordant_mates: 3,coverage1: 887,coverage2: 43,confidence: high | ||
| IGFL1P2--HIF3A | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:46260672#chr19:46303898,reading-frame: .,type: deletion/read-through/3'-3',split_reads1: 8,split_reads2: 23,discordant_mates: 0,coverage1: 52,coverage2: 218,confidence: high | ||
| AP1B1--AL929601.3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr22:29388424#chr14:18980405,reading-frame: .,type: translocation,split_reads1: 12,split_reads2: 14,discordant_mates: 0,coverage1: 3013,coverage2: 18,confidence: high | ||
| UNC13B--B4GALT1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:35313989#chr9:33123744,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 12,split_reads2: 6,discordant_mates: 0,coverage1: 723,coverage2: 6,confidence: high | ||
| AC010904.1--ZC3H7B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:7338304#chr22:41320655,reading-frame: .,type: translocation,split_reads1: 2,split_reads2: 14,discordant_mates: 0,coverage1: 4,coverage2: 1632,confidence: high | ||
| AC013460.1--ZC3H7B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:7338304#chr22:41320655,reading-frame: .,type: translocation,split_reads1: 2,split_reads2: 14,discordant_mates: 0,coverage1: 4,coverage2: 1632,confidence: high | ||
| TLK2--FAM157A | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126#chr3:198180755,reading-frame: .,type: translocation,split_reads1: 2,split_reads2: 11,discordant_mates: 0,coverage1: 1820,coverage2: 1181,confidence: high | ||
| LINC00923--ARNT2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:97694606#chr15:80450880,reading-frame: .,type: inversion,split_reads1: 4,split_reads2: 5,discordant_mates: 0,coverage1: 5,coverage2: 335,confidence: high |
28 rows