File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/ee1da87d00bcab304e99bb72315c74/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 20:32:32
                             Started mapping on |	Jun 03 20:39:09
                                    Finished on |	Jun 03 21:25:34
       Mapping speed, Million of reads per hour |	241.05

                          Number of input reads |	186477714
                      Average input read length |	216
                                    UNIQUE READS:
                   Uniquely mapped reads number |	176345053
                        Uniquely mapped reads % |	94.57%
                          Average mapped length |	214.99
                       Number of splices: Total |	151751492
            Number of splices: Annotated (sjdb) |	149332342
                       Number of splices: GT/AG |	149844341
                       Number of splices: GC/AG |	976162
                       Number of splices: AT/AC |	101493
               Number of splices: Non-canonical |	829496
                      Mismatch rate per base, % |	0.27%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.20
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.53
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8260397
             % of reads mapped to multiple loci |	4.43%
        Number of reads mapped to too many loci |	392648
             % of reads mapped to too many loci |	0.21%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1223878
                 % of reads unmapped: too short |	0.66%
                Number of reads unmapped: other |	255738
                     % of reads unmapped: other |	0.14%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%