File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/92fcfad8ea5634a3988ca7770059dd/.command.log
Size
3.9 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-2b9bfa-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/92fcfad8ea5634a3988ca7770059dd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/92fcfad8ea5634a3988ca7770059dd/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/d97ca0b81b8b3d26dc100fb1696958/aih-tih-sc-2b9bfa-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/da22fb9b6f0e1abc0c03b91d382698/aih-tih-sc-2b9bfa-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
SRRM1--CLIC4
starfusion
DTX2--PTPN12
starfusion
TLK2--AC240565.1
starfusion
TVP23C--CDRT4
arriba
TRAPPC9--TRAPPC9
arriba
STX16--NPEPL1
arriba
PTPN12--MAGI2
arriba
TOPORS--LINGO2
arriba
TOPORS--BNC2
arriba
TOPORS--AL162725.2
arriba
TSBP1--NOTCH4
arriba
TSBP1--TSBP1-AS1
arriba
KLRC4--KLRK1
arriba
FRG1DP--MLLT10P1
arriba
FRG1DP--5_8S_rRNA
arriba

  0%|          | 0/15 [00:00<?, ?it/s]
Processing SRRM1--CLIC4:   0%|          | 0/15 [00:00<?, ?it/s]
Processing SRRM1--CLIC4:   7%|▋         | 1/15 [00:00<00:01,  8.67it/s]
Processing DTX2--PTPN12:   7%|▋         | 1/15 [00:00<00:01,  8.67it/s]
Processing DTX2--PTPN12:  13%|█▎        | 2/15 [00:00<00:01,  9.07it/s]
Processing TLK2--AC240565.1:  13%|█▎        | 2/15 [00:00<00:01,  9.07it/s]
Processing TLK2--AC240565.1:  20%|██        | 3/15 [00:00<00:01,  9.20it/s]
Processing TVP23C--CDRT4:  20%|██        | 3/15 [00:00<00:01,  9.20it/s]   
Processing TVP23C--CDRT4:  27%|██▋       | 4/15 [00:00<00:01,  9.26it/s]
Processing TRAPPC9--TRAPPC9:  27%|██▋       | 4/15 [00:00<00:01,  9.26it/s]
Processing TRAPPC9--TRAPPC9:  33%|███▎      | 5/15 [00:00<00:01,  9.28it/s]
Processing STX16--NPEPL1:  33%|███▎      | 5/15 [00:00<00:01,  9.28it/s]   
Processing STX16--NPEPL1:  40%|████      | 6/15 [00:00<00:00,  9.29it/s]
Processing PTPN12--MAGI2:  40%|████      | 6/15 [00:00<00:00,  9.29it/s]
Processing PTPN12--MAGI2:  47%|████▋     | 7/15 [00:00<00:00,  9.26it/s]
Processing TOPORS--LINGO2:  47%|████▋     | 7/15 [00:00<00:00,  9.26it/s]
Processing TOPORS--LINGO2:  53%|█████▎    | 8/15 [00:00<00:00,  9.29it/s]
Processing TOPORS--BNC2:  53%|█████▎    | 8/15 [00:00<00:00,  9.29it/s]  
Processing TOPORS--BNC2:  60%|██████    | 9/15 [00:00<00:00,  9.23it/s]
Processing TOPORS--AL162725.2:  60%|██████    | 9/15 [00:00<00:00,  9.23it/s]
Processing TOPORS--AL162725.2:  67%|██████▋   | 10/15 [00:01<00:00,  9.27it/s]
Processing TSBP1--NOTCH4:  67%|██████▋   | 10/15 [00:01<00:00,  9.27it/s]     
Processing TSBP1--NOTCH4:  73%|███████▎  | 11/15 [00:01<00:00,  9.27it/s]
Processing TSBP1--TSBP1-AS1:  73%|███████▎  | 11/15 [00:01<00:00,  9.27it/s]
Processing TSBP1--TSBP1-AS1:  80%|████████  | 12/15 [00:01<00:00,  9.27it/s]
Processing KLRC4--KLRK1:  80%|████████  | 12/15 [00:01<00:00,  9.27it/s]    
Processing KLRC4--KLRK1:  87%|████████▋ | 13/15 [00:01<00:00,  9.28it/s]
Processing FRG1DP--MLLT10P1:  87%|████████▋ | 13/15 [00:01<00:00,  9.28it/s]
Processing FRG1DP--MLLT10P1:  93%|█████████▎| 14/15 [00:01<00:00,  9.27it/s]
Processing FRG1DP--5_8S_rRNA:  93%|█████████▎| 14/15 [00:01<00:00,  9.27it/s]
Processing FRG1DP--5_8S_rRNA: 100%|██████████| 15/15 [00:01<00:00,  9.28it/s]
Processing FRG1DP--5_8S_rRNA: 100%|██████████| 15/15 [00:01<00:00,  9.25it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory