Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/00f6554ab015bee69f7c69bb49701f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/00f6554ab015bee69f7c69bb49701f/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/b3bae005606c627e92d8fa94fe167c/aih-tih-sc-64cd51-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/4b03ace1a753abe42e671b72c670e7/aih-tih-sc-64cd51-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
NUP214--LAMC3
starfusion
arriba
PTPN12--GNAI1
starfusion
arriba
PSME4--ACYP2
starfusion
arriba
SMARCA5--CACNA1C
starfusion
arriba
SSR1--AL031123.1
starfusion
CAAP1--LRRC19
starfusion
arriba
TRMT2A--PRODH
starfusion
arriba
TLK2--AC240565.1
starfusion
FRAS1--TBCK
starfusion
arriba
SCLT1--LINC02173
starfusion
arriba
GALNT17--AUTS2
starfusion
arriba
ARID1A--ARID1A
arriba
TVP23C--CDRT4
arriba
ZMIZ1--DLG5-AS1
arriba
ZMIZ1--H2AZP5
arriba
AC015911.9--SLFN12L
arriba
CCDC169--SOHLH2
arriba
B3GNTL1--AC139099.2
arriba
AC019197.1--KCNH7
arriba
AC019197.1--RPL7P61
arriba
CEMIP2--TMC1
arriba

  0%|          | 0/21 [00:00<?, ?it/s]
Processing NUP214--LAMC3:   0%|          | 0/21 [00:00<?, ?it/s]
Processing NUP214--LAMC3:   5%|▍         | 1/21 [00:00<00:02,  8.78it/s]
Processing PTPN12--GNAI1:   5%|▍         | 1/21 [00:00<00:02,  8.78it/s]
Processing PTPN12--GNAI1:  10%|▉         | 2/21 [00:00<00:02,  9.14it/s]
Processing PSME4--ACYP2:  10%|▉         | 2/21 [00:00<00:02,  9.14it/s] 
Processing PSME4--ACYP2:  14%|█▍        | 3/21 [00:00<00:01,  9.28it/s]
Processing SMARCA5--CACNA1C:  14%|█▍        | 3/21 [00:00<00:01,  9.28it/s]
Processing SMARCA5--CACNA1C:  19%|█▉        | 4/21 [00:00<00:01,  9.35it/s]
Processing SSR1--AL031123.1:  19%|█▉        | 4/21 [00:00<00:01,  9.35it/s]
Processing SSR1--AL031123.1:  24%|██▍       | 5/21 [00:00<00:01,  9.39it/s]
Processing CAAP1--LRRC19:  24%|██▍       | 5/21 [00:00<00:01,  9.39it/s]   
Processing CAAP1--LRRC19:  29%|██▊       | 6/21 [00:00<00:01,  9.41it/s]
Processing TRMT2A--PRODH:  29%|██▊       | 6/21 [00:00<00:01,  9.41it/s]
Processing TRMT2A--PRODH:  33%|███▎      | 7/21 [00:00<00:01,  9.42it/s]
Processing TLK2--AC240565.1:  33%|███▎      | 7/21 [00:00<00:01,  9.42it/s]
Processing TLK2--AC240565.1:  38%|███▊      | 8/21 [00:00<00:01,  9.43it/s]
Processing FRAS1--TBCK:  38%|███▊      | 8/21 [00:00<00:01,  9.43it/s]     
Processing FRAS1--TBCK:  43%|████▎     | 9/21 [00:00<00:01,  9.44it/s]
Processing SCLT1--LINC02173:  43%|████▎     | 9/21 [00:00<00:01,  9.44it/s]
Processing SCLT1--LINC02173:  48%|████▊     | 10/21 [00:01<00:01,  9.45it/s]
Processing GALNT17--AUTS2:  48%|████▊     | 10/21 [00:01<00:01,  9.45it/s]  
Processing GALNT17--AUTS2:  52%|█████▏    | 11/21 [00:01<00:01,  9.45it/s]
Processing ARID1A--ARID1A:  52%|█████▏    | 11/21 [00:01<00:01,  9.45it/s]
Processing ARID1A--ARID1A:  57%|█████▋    | 12/21 [00:01<00:00,  9.44it/s]
Processing TVP23C--CDRT4:  57%|█████▋    | 12/21 [00:01<00:00,  9.44it/s] 
Processing TVP23C--CDRT4:  62%|██████▏   | 13/21 [00:01<00:00,  9.44it/s]
Processing ZMIZ1--DLG5-AS1:  62%|██████▏   | 13/21 [00:01<00:00,  9.44it/s]
Processing ZMIZ1--DLG5-AS1:  67%|██████▋   | 14/21 [00:01<00:00,  9.45it/s]
Processing ZMIZ1--H2AZP5:  67%|██████▋   | 14/21 [00:01<00:00,  9.45it/s]  
Processing ZMIZ1--H2AZP5:  71%|███████▏  | 15/21 [00:01<00:00,  9.45it/s]
Processing AC015911.9--SLFN12L:  71%|███████▏  | 15/21 [00:01<00:00,  9.45it/s]
Processing AC015911.9--SLFN12L:  76%|███████▌  | 16/21 [00:01<00:00,  9.46it/s]
Processing CCDC169--SOHLH2:  76%|███████▌  | 16/21 [00:01<00:00,  9.46it/s]    
Processing CCDC169--SOHLH2:  81%|████████  | 17/21 [00:01<00:00,  9.46it/s]
Processing B3GNTL1--AC139099.2:  81%|████████  | 17/21 [00:01<00:00,  9.46it/s]
Processing B3GNTL1--AC139099.2:  86%|████████▌ | 18/21 [00:01<00:00,  9.46it/s]
Processing AC019197.1--KCNH7:  86%|████████▌ | 18/21 [00:01<00:00,  9.46it/s]  
Processing AC019197.1--KCNH7:  90%|█████████ | 19/21 [00:02<00:00,  9.46it/s]
Processing AC019197.1--RPL7P61:  90%|█████████ | 19/21 [00:02<00:00,  9.46it/s]
Processing AC019197.1--RPL7P61:  95%|█████████▌| 20/21 [00:02<00:00,  9.46it/s]
Processing CEMIP2--TMC1:  95%|█████████▌| 20/21 [00:02<00:00,  9.46it/s]       
Processing CEMIP2--TMC1: 100%|██████████| 21/21 [00:02<00:00,  9.45it/s]
Processing CEMIP2--TMC1: 100%|██████████| 21/21 [00:02<00:00,  9.42it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory