File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/4ff26a6cff3e8431a92f2afd6c2522/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-da06ce-R1_A23YTGFLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/4ff26a6cff3e8431a92f2afd6c2522/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/4ff26a6cff3e8431a92f2afd6c2522/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/d9437a5b6d7113c4f4bb4f1ab15701/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/62995bb8d8db273fec1a71e76f7cc0/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 369043498
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-da06ce-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	369043498
Known Splicing Events:	366148056
Partial Novel Splicing Events:	1758184
Novel Splicing Events:	1040665
Filtered Splicing Events:	96593

Total splicing  Junctions:	447988
Known Splicing Junctions:	254332
Partial Novel Splicing Junctions:	116863
Novel Splicing Junctions:	76793

===================================================================
Create BED file ...
Create Interact file ...