.command.err - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:PICARD_COLLECTRNASEQMETRICS (aih-tih-sc-31d31f-R1_A23YTGFLT4_1)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/42ebaf549f566984dfe50050c1c452/.command.err
Size: 81.4 KB
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:PICARD_COLLECTRNASEQMETRICS (aih-tih-sc-31d31f-R1_A23YTGFLT4_1)
Attempt
Content

/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
Jun 03, 2026 7:45:36 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Wed Jun 03 19:45:36 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT aih-tih-sc-31d31f-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-31d31f-R1_A23YTGFLT4_1_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Wed Jun 03 19:45:37 GMT 2026] Executing as ?@nf-9a42ebaf549f566984dfe50050c1c452-be268-2hpz4 on Linux 6.12.83 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
WARNING: BAM index file /tmp/nxf.XXXXweQklg/aih-tih-sc-31d31f-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXXweQklg/aih-tih-sc-31d31f-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
INFO	2026-06-03 19:45:40	CollectRnaSeqMetrics	Loaded 58279 genes.
INFO	2026-06-03 19:45:58	SinglePassSamProgram	Processed     1,000,000 records.  Elapsed time: 00:00:17s.  Time for last 1,000,000:   17s.  Last read position: chr1:1,472,007
INFO	2026-06-03 19:46:17	SinglePassSamProgram	Processed     2,000,000 records.  Elapsed time: 00:00:37s.  Time for last 1,000,000:   19s.  Last read position: chr1:6,253,768
INFO	2026-06-03 19:46:34	SinglePassSamProgram	Processed     3,000,000 records.  Elapsed time: 00:00:54s.  Time for last 1,000,000:   17s.  Last read position: chr1:9,744,613
INFO	2026-06-03 19:46:57	SinglePassSamProgram	Processed     4,000,000 records.  Elapsed time: 00:01:17s.  Time for last 1,000,000:   22s.  Last read position: chr1:13,782,367
INFO	2026-06-03 19:47:09	SinglePassSamProgram	Processed     5,000,000 records.  Elapsed time: 00:01:29s.  Time for last 1,000,000:   12s.  Last read position: chr1:17,069,133
INFO	2026-06-03 19:47:30	SinglePassSamProgram	Processed     6,000,000 records.  Elapsed time: 00:01:50s.  Time for last 1,000,000:   20s.  Last read position: chr1:20,941,734
INFO	2026-06-03 19:47:57	SinglePassSamProgram	Processed     7,000,000 records.  Elapsed time: 00:02:16s.  Time for last 1,000,000:   26s.  Last read position: chr1:22,639,312
INFO	2026-06-03 19:48:07	SinglePassSamProgram	Processed     8,000,000 records.  Elapsed time: 00:02:27s.  Time for last 1,000,000:   10s.  Last read position: chr1:25,829,606
INFO	2026-06-03 19:48:21	SinglePassSamProgram	Processed     9,000,000 records.  Elapsed time: 00:02:41s.  Time for last 1,000,000:   14s.  Last read position: chr1:27,552,007
INFO	2026-06-03 19:48:37	SinglePassSamProgram	Processed    10,000,000 records.  Elapsed time: 00:02:57s.  Time for last 1,000,000:   16s.  Last read position: chr1:32,226,415
INFO	2026-06-03 19:48:50	SinglePassSamProgram	Processed    11,000,000 records.  Elapsed time: 00:03:10s.  Time for last 1,000,000:   12s.  Last read position: chr1:35,192,643
INFO	2026-06-03 19:49:18	SinglePassSamProgram	Processed    12,000,000 records.  Elapsed time: 00:03:38s.  Time for last 1,000,000:   28s.  Last read position: chr1:39,387,236
INFO	2026-06-03 19:50:01	SinglePassSamProgram	Processed    13,000,000 records.  Elapsed time: 00:04:20s.  Time for last 1,000,000:   42s.  Last read position: chr1:43,312,370
INFO	2026-06-03 19:50:28	SinglePassSamProgram	Processed    14,000,000 records.  Elapsed time: 00:04:48s.  Time for last 1,000,000:   27s.  Last read position: chr1:45,676,842
INFO	2026-06-03 19:50:46	SinglePassSamProgram	Processed    15,000,000 records.  Elapsed time: 00:05:06s.  Time for last 1,000,000:   18s.  Last read position: chr1:52,950,776
INFO	2026-06-03 19:51:08	SinglePassSamProgram	Processed    16,000,000 records.  Elapsed time: 00:05:28s.  Time for last 1,000,000:   22s.  Last read position: chr1:67,269,552
INFO	2026-06-03 19:51:24	SinglePassSamProgram	Processed    17,000,000 records.  Elapsed time: 00:05:43s.  Time for last 1,000,000:   15s.  Last read position: chr1:93,582,725
INFO	2026-06-03 19:51:41	SinglePassSamProgram	Processed    18,000,000 records.  Elapsed time: 00:06:01s.  Time for last 1,000,000:   17s.  Last read position: chr1:110,341,327
INFO	2026-06-03 19:51:50	SinglePassSamProgram	Processed    19,000,000 records.  Elapsed time: 00:06:10s.  Time for last 1,000,000:    9s.  Last read position: chr1:115,976,658
INFO	2026-06-03 19:52:01	SinglePassSamProgram	Processed    20,000,000 records.  Elapsed time: 00:06:20s.  Time for last 1,000,000:   10s.  Last read position: chr1:143,904,241
INFO	2026-06-03 19:52:08	SinglePassSamProgram	Processed    21,000,000 records.  Elapsed time: 00:06:28s.  Time for last 1,000,000:    7s.  Last read position: chr1:148,564,860
INFO	2026-06-03 19:52:16	SinglePassSamProgram	Processed    22,000,000 records.  Elapsed time: 00:06:36s.  Time for last 1,000,000:    7s.  Last read position: chr1:150,338,236
INFO	2026-06-03 19:52:34	SinglePassSamProgram	Processed    23,000,000 records.  Elapsed time: 00:06:54s.  Time for last 1,000,000:   18s.  Last read position: chr1:151,520,226
INFO	2026-06-03 19:52:46	SinglePassSamProgram	Processed    24,000,000 records.  Elapsed time: 00:07:06s.  Time for last 1,000,000:   11s.  Last read position: chr1:154,170,419
INFO	2026-06-03 19:53:13	SinglePassSamProgram	Processed    25,000,000 records.  Elapsed time: 00:07:32s.  Time for last 1,000,000:   26s.  Last read position: chr1:155,181,854
INFO	2026-06-03 19:53:35	SinglePassSamProgram	Processed    26,000,000 records.  Elapsed time: 00:07:54s.  Time for last 1,000,000:   22s.  Last read position: chr1:156,042,285
INFO	2026-06-03 19:53:54	SinglePassSamProgram	Processed    27,000,000 records.  Elapsed time: 00:08:14s.  Time for last 1,000,000:   19s.  Last read position: chr1:156,969,302
INFO	2026-06-03 19:54:06	SinglePassSamProgram	Processed    28,000,000 records.  Elapsed time: 00:08:25s.  Time for last 1,000,000:   11s.  Last read position: chr1:167,054,274
INFO	2026-06-03 19:54:16	SinglePassSamProgram	Processed    29,000,000 records.  Elapsed time: 00:08:36s.  Time for last 1,000,000:   10s.  Last read position: chr1:178,024,040
INFO	2026-06-03 19:54:23	SinglePassSamProgram	Processed    30,000,000 records.  Elapsed time: 00:08:43s.  Time for last 1,000,000:    6s.  Last read position: chr1:186,339,745
INFO	2026-06-03 19:54:33	SinglePassSamProgram	Processed    31,000,000 records.  Elapsed time: 00:08:52s.  Time for last 1,000,000:    9s.  Last read position: chr1:202,422,672
INFO	2026-06-03 19:54:45	SinglePassSamProgram	Processed    32,000,000 records.  Elapsed time: 00:09:05s.  Time for last 1,000,000:   12s.  Last read position: chr1:206,685,211
INFO	2026-06-03 19:54:49	SinglePassSamProgram	Processed    33,000,000 records.  Elapsed time: 00:09:08s.  Time for last 1,000,000:    3s.  Last read position: chr1:207,336,807
INFO	2026-06-03 19:54:58	SinglePassSamProgram	Processed    34,000,000 records.  Elapsed time: 00:09:18s.  Time for last 1,000,000:    9s.  Last read position: chr1:223,619,357
INFO	2026-06-03 19:55:14	SinglePassSamProgram	Processed    35,000,000 records.  Elapsed time: 00:09:34s.  Time for last 1,000,000:   15s.  Last read position: chr1:228,271,963
INFO	2026-06-03 19:55:33	SinglePassSamProgram	Processed    36,000,000 records.  Elapsed time: 00:09:53s.  Time for last 1,000,000:   19s.  Last read position: chr1:236,064,882
INFO	2026-06-03 19:55:45	SinglePassSamProgram	Processed    37,000,000 records.  Elapsed time: 00:10:04s.  Time for last 1,000,000:   11s.  Last read position: chr2:3,388,596
INFO	2026-06-03 19:55:54	SinglePassSamProgram	Processed    38,000,000 records.  Elapsed time: 00:10:13s.  Time for last 1,000,000:    9s.  Last read position: chr2:20,278,599
INFO	2026-06-03 19:56:03	SinglePassSamProgram	Processed    39,000,000 records.  Elapsed time: 00:10:22s.  Time for last 1,000,000:    9s.  Last read position: chr2:27,234,628
INFO	2026-06-03 19:56:12	SinglePassSamProgram	Processed    40,000,000 records.  Elapsed time: 00:10:32s.  Time for last 1,000,000:    9s.  Last read position: chr2:32,916,254
INFO	2026-06-03 19:56:16	SinglePassSamProgram	Processed    41,000,000 records.  Elapsed time: 00:10:36s.  Time for last 1,000,000:    4s.  Last read position: chr2:32,916,273
INFO	2026-06-03 19:56:18	SinglePassSamProgram	Processed    42,000,000 records.  Elapsed time: 00:10:37s.  Time for last 1,000,000:    1s.  Last read position: chr2:32,916,444
INFO	2026-06-03 19:56:24	SinglePassSamProgram	Processed    43,000,000 records.  Elapsed time: 00:10:44s.  Time for last 1,000,000:    6s.  Last read position: chr2:43,225,006
INFO	2026-06-03 19:56:35	SinglePassSamProgram	Processed    44,000,000 records.  Elapsed time: 00:10:55s.  Time for last 1,000,000:   10s.  Last read position: chr2:54,626,099
INFO	2026-06-03 19:56:54	SinglePassSamProgram	Processed    45,000,000 records.  Elapsed time: 00:11:14s.  Time for last 1,000,000:   18s.  Last read position: chr2:61,348,354
INFO	2026-06-03 19:57:11	SinglePassSamProgram	Processed    46,000,000 records.  Elapsed time: 00:11:31s.  Time for last 1,000,000:   17s.  Last read position: chr2:71,388,662
INFO	2026-06-03 19:57:23	SinglePassSamProgram	Processed    47,000,000 records.  Elapsed time: 00:11:42s.  Time for last 1,000,000:   11s.  Last read position: chr2:74,878,916
INFO	2026-06-03 19:57:28	SinglePassSamProgram	Processed    48,000,000 records.  Elapsed time: 00:11:48s.  Time for last 1,000,000:    5s.  Last read position: chr2:88,126,308
INFO	2026-06-03 19:57:37	SinglePassSamProgram	Processed    49,000,000 records.  Elapsed time: 00:11:57s.  Time for last 1,000,000:    8s.  Last read position: chr2:97,792,436
INFO	2026-06-03 19:57:45	SinglePassSamProgram	Processed    50,000,000 records.  Elapsed time: 00:12:05s.  Time for last 1,000,000:    8s.  Last read position: chr2:108,754,937
INFO	2026-06-03 19:57:50	SinglePassSamProgram	Processed    51,000,000 records.  Elapsed time: 00:12:10s.  Time for last 1,000,000:    4s.  Last read position: chr2:111,873,329
INFO	2026-06-03 19:57:58	SinglePassSamProgram	Processed    52,000,000 records.  Elapsed time: 00:12:18s.  Time for last 1,000,000:    7s.  Last read position: chr2:127,605,899
INFO	2026-06-03 19:58:10	SinglePassSamProgram	Processed    53,000,000 records.  Elapsed time: 00:12:29s.  Time for last 1,000,000:   11s.  Last read position: chr2:148,483,657
INFO	2026-06-03 19:58:25	SinglePassSamProgram	Processed    54,000,000 records.  Elapsed time: 00:12:44s.  Time for last 1,000,000:   15s.  Last read position: chr2:170,965,794
INFO	2026-06-03 19:59:02	SinglePassSamProgram	Processed    55,000,000 records.  Elapsed time: 00:13:21s.  Time for last 1,000,000:   36s.  Last read position: chr2:181,531,742
INFO	2026-06-03 19:59:21	SinglePassSamProgram	Processed    56,000,000 records.  Elapsed time: 00:13:41s.  Time for last 1,000,000:   19s.  Last read position: chr2:190,998,271
INFO	2026-06-03 19:59:45	SinglePassSamProgram	Processed    57,000,000 records.  Elapsed time: 00:14:05s.  Time for last 1,000,000:   24s.  Last read position: chr2:203,112,042
INFO	2026-06-03 20:00:01	SinglePassSamProgram	Processed    58,000,000 records.  Elapsed time: 00:14:21s.  Time for last 1,000,000:   15s.  Last read position: chr2:215,379,269
INFO	2026-06-03 20:00:52	SinglePassSamProgram	Processed    59,000,000 records.  Elapsed time: 00:15:11s.  Time for last 1,000,000:   50s.  Last read position: chr2:218,392,980
INFO	2026-06-03 20:01:06	SinglePassSamProgram	Processed    60,000,000 records.  Elapsed time: 00:15:26s.  Time for last 1,000,000:   14s.  Last read position: chr2:224,862,694
INFO	2026-06-03 20:01:25	SinglePassSamProgram	Processed    61,000,000 records.  Elapsed time: 00:15:45s.  Time for last 1,000,000:   18s.  Last read position: chr2:231,521,013
INFO	2026-06-03 20:01:45	SinglePassSamProgram	Processed    62,000,000 records.  Elapsed time: 00:16:05s.  Time for last 1,000,000:   20s.  Last read position: chr2:237,377,165
INFO	2026-06-03 20:02:03	SinglePassSamProgram	Processed    63,000,000 records.  Elapsed time: 00:16:23s.  Time for last 1,000,000:   18s.  Last read position: chr2:241,240,065
INFO	2026-06-03 20:02:25	SinglePassSamProgram	Processed    64,000,000 records.  Elapsed time: 00:16:44s.  Time for last 1,000,000:   21s.  Last read position: chr3:9,933,056
INFO	2026-06-03 20:02:35	SinglePassSamProgram	Processed    65,000,000 records.  Elapsed time: 00:16:55s.  Time for last 1,000,000:   10s.  Last read position: chr3:18,349,426
INFO	2026-06-03 20:02:47	SinglePassSamProgram	Processed    66,000,000 records.  Elapsed time: 00:17:06s.  Time for last 1,000,000:   11s.  Last read position: chr3:38,020,230
INFO	2026-06-03 20:03:05	SinglePassSamProgram	Processed    67,000,000 records.  Elapsed time: 00:17:25s.  Time for last 1,000,000:   18s.  Last read position: chr3:45,118,457
INFO	2026-06-03 20:03:17	SinglePassSamProgram	Processed    68,000,000 records.  Elapsed time: 00:17:37s.  Time for last 1,000,000:   12s.  Last read position: chr3:47,916,804
INFO	2026-06-03 20:03:44	SinglePassSamProgram	Processed    69,000,000 records.  Elapsed time: 00:18:04s.  Time for last 1,000,000:   26s.  Last read position: chr3:49,006,123
INFO	2026-06-03 20:03:59	SinglePassSamProgram	Processed    70,000,000 records.  Elapsed time: 00:18:18s.  Time for last 1,000,000:   14s.  Last read position: chr3:49,972,125
INFO	2026-06-03 20:04:10	SinglePassSamProgram	Processed    71,000,000 records.  Elapsed time: 00:18:30s.  Time for last 1,000,000:   11s.  Last read position: chr3:52,502,009
INFO	2026-06-03 20:04:26	SinglePassSamProgram	Processed    72,000,000 records.  Elapsed time: 00:18:46s.  Time for last 1,000,000:   16s.  Last read position: chr3:58,524,588
INFO	2026-06-03 20:04:41	SinglePassSamProgram	Processed    73,000,000 records.  Elapsed time: 00:19:01s.  Time for last 1,000,000:   14s.  Last read position: chr3:100,386,886
INFO	2026-06-03 20:04:54	SinglePassSamProgram	Processed    74,000,000 records.  Elapsed time: 00:19:13s.  Time for last 1,000,000:   12s.  Last read position: chr3:121,694,567
INFO	2026-06-03 20:05:03	SinglePassSamProgram	Processed    75,000,000 records.  Elapsed time: 00:19:23s.  Time for last 1,000,000:    9s.  Last read position: chr3:127,014,711
INFO	2026-06-03 20:05:13	SinglePassSamProgram	Processed    76,000,000 records.  Elapsed time: 00:19:33s.  Time for last 1,000,000:   10s.  Last read position: chr3:134,486,543
INFO	2026-06-03 20:05:24	SinglePassSamProgram	Processed    77,000,000 records.  Elapsed time: 00:19:44s.  Time for last 1,000,000:   10s.  Last read position: chr3:158,665,346
INFO	2026-06-03 20:05:35	SinglePassSamProgram	Processed    78,000,000 records.  Elapsed time: 00:19:54s.  Time for last 1,000,000:   10s.  Last read position: chr3:184,142,321
INFO	2026-06-03 20:05:56	SinglePassSamProgram	Processed    79,000,000 records.  Elapsed time: 00:20:16s.  Time for last 1,000,000:   21s.  Last read position: chr3:188,524,726
INFO	2026-06-03 20:06:03	SinglePassSamProgram	Processed    80,000,000 records.  Elapsed time: 00:20:23s.  Time for last 1,000,000:    6s.  Last read position: chr3:195,725,206
INFO	2026-06-03 20:06:19	SinglePassSamProgram	Processed    81,000,000 records.  Elapsed time: 00:20:39s.  Time for last 1,000,000:   16s.  Last read position: chr3:195,779,581
INFO	2026-06-03 20:06:47	SinglePassSamProgram	Processed    82,000,000 records.  Elapsed time: 00:21:07s.  Time for last 1,000,000:   27s.  Last read position: chr3:195,783,512
INFO	2026-06-03 20:07:18	SinglePassSamProgram	Processed    83,000,000 records.  Elapsed time: 00:21:38s.  Time for last 1,000,000:   31s.  Last read position: chr3:195,787,869
INFO	2026-06-03 20:07:51	SinglePassSamProgram	Processed    84,000,000 records.  Elapsed time: 00:22:11s.  Time for last 1,000,000:   32s.  Last read position: chr3:197,951,157
INFO	2026-06-03 20:08:04	SinglePassSamProgram	Processed    85,000,000 records.  Elapsed time: 00:22:24s.  Time for last 1,000,000:   13s.  Last read position: chr4:1,804,946
INFO	2026-06-03 20:08:20	SinglePassSamProgram	Processed    86,000,000 records.  Elapsed time: 00:22:40s.  Time for last 1,000,000:   16s.  Last read position: chr4:6,863,295
INFO	2026-06-03 20:08:29	SinglePassSamProgram	Processed    87,000,000 records.  Elapsed time: 00:22:48s.  Time for last 1,000,000:    8s.  Last read position: chr4:25,662,552
INFO	2026-06-03 20:08:41	SinglePassSamProgram	Processed    88,000,000 records.  Elapsed time: 00:23:01s.  Time for last 1,000,000:   12s.  Last read position: chr4:54,064,190
INFO	2026-06-03 20:08:50	SinglePassSamProgram	Processed    89,000,000 records.  Elapsed time: 00:23:10s.  Time for last 1,000,000:    8s.  Last read position: chr4:73,156,044
INFO	2026-06-03 20:09:02	SinglePassSamProgram	Processed    90,000,000 records.  Elapsed time: 00:23:22s.  Time for last 1,000,000:   11s.  Last read position: chr4:83,094,744
INFO	2026-06-03 20:09:20	SinglePassSamProgram	Processed    91,000,000 records.  Elapsed time: 00:23:40s.  Time for last 1,000,000:   18s.  Last read position: chr4:106,328,115
INFO	2026-06-03 20:09:39	SinglePassSamProgram	Processed    92,000,000 records.  Elapsed time: 00:23:58s.  Time for last 1,000,000:   18s.  Last read position: chr4:139,147,812
INFO	2026-06-03 20:09:52	SinglePassSamProgram	Processed    93,000,000 records.  Elapsed time: 00:24:11s.  Time for last 1,000,000:   13s.  Last read position: chr4:153,168,487
INFO	2026-06-03 20:10:08	SinglePassSamProgram	Processed    94,000,000 records.  Elapsed time: 00:24:27s.  Time for last 1,000,000:   16s.  Last read position: chr4:186,611,388
INFO	2026-06-03 20:10:16	SinglePassSamProgram	Processed    95,000,000 records.  Elapsed time: 00:24:35s.  Time for last 1,000,000:    7s.  Last read position: chr5:10,258,278
INFO	2026-06-03 20:10:40	SinglePassSamProgram	Processed    96,000,000 records.  Elapsed time: 00:24:59s.  Time for last 1,000,000:   24s.  Last read position: chr5:16,475,044
INFO	2026-06-03 20:10:50	SinglePassSamProgram	Processed    97,000,000 records.  Elapsed time: 00:25:09s.  Time for last 1,000,000:    9s.  Last read position: chr5:42,801,093
INFO	2026-06-03 20:11:02	SinglePassSamProgram	Processed    98,000,000 records.  Elapsed time: 00:25:21s.  Time for last 1,000,000:   11s.  Last read position: chr5:69,365,259
INFO	2026-06-03 20:11:09	SinglePassSamProgram	Processed    99,000,000 records.  Elapsed time: 00:25:29s.  Time for last 1,000,000:    7s.  Last read position: chr5:82,269,947
INFO	2026-06-03 20:11:35	SinglePassSamProgram	Processed   100,000,000 records.  Elapsed time: 00:25:54s.  Time for last 1,000,000:   25s.  Last read position: chr5:113,018,370
INFO	2026-06-03 20:11:47	SinglePassSamProgram	Processed   101,000,000 records.  Elapsed time: 00:26:06s.  Time for last 1,000,000:   11s.  Last read position: chr5:132,822,999
INFO	2026-06-03 20:12:00	SinglePassSamProgram	Processed   102,000,000 records.  Elapsed time: 00:26:19s.  Time for last 1,000,000:   13s.  Last read position: chr5:138,466,995
INFO	2026-06-03 20:12:13	SinglePassSamProgram	Processed   103,000,000 records.  Elapsed time: 00:26:33s.  Time for last 1,000,000:   13s.  Last read position: chr5:141,102,404
INFO	2026-06-03 20:12:27	SinglePassSamProgram	Processed   104,000,000 records.  Elapsed time: 00:26:47s.  Time for last 1,000,000:   14s.  Last read position: chr5:146,459,124
INFO	2026-06-03 20:12:36	SinglePassSamProgram	Processed   105,000,000 records.  Elapsed time: 00:26:56s.  Time for last 1,000,000:    8s.  Last read position: chr5:150,402,568
INFO	2026-06-03 20:12:45	SinglePassSamProgram	Processed   106,000,000 records.  Elapsed time: 00:27:04s.  Time for last 1,000,000:    8s.  Last read position: chr5:154,792,679
INFO	2026-06-03 20:12:56	SinglePassSamProgram	Processed   107,000,000 records.  Elapsed time: 00:27:16s.  Time for last 1,000,000:   11s.  Last read position: chr5:171,392,962
INFO	2026-06-03 20:13:05	SinglePassSamProgram	Processed   108,000,000 records.  Elapsed time: 00:27:25s.  Time for last 1,000,000:    8s.  Last read position: chr5:177,366,195
INFO	2026-06-03 20:13:22	SinglePassSamProgram	Processed   109,000,000 records.  Elapsed time: 00:27:41s.  Time for last 1,000,000:   16s.  Last read position: chr5:179,797,997
INFO	2026-06-03 20:13:31	SinglePassSamProgram	Processed   110,000,000 records.  Elapsed time: 00:27:51s.  Time for last 1,000,000:    9s.  Last read position: chr5:181,260,264
INFO	2026-06-03 20:13:44	SinglePassSamProgram	Processed   111,000,000 records.  Elapsed time: 00:28:04s.  Time for last 1,000,000:   12s.  Last read position: chr6:7,247,193
INFO	2026-06-03 20:13:54	SinglePassSamProgram	Processed   112,000,000 records.  Elapsed time: 00:28:14s.  Time for last 1,000,000:    9s.  Last read position: chr6:21,594,598
INFO	2026-06-03 20:14:00	SinglePassSamProgram	Processed   113,000,000 records.  Elapsed time: 00:28:20s.  Time for last 1,000,000:    6s.  Last read position: chr6:29,610,960
INFO	2026-06-03 20:14:09	SinglePassSamProgram	Processed   114,000,000 records.  Elapsed time: 00:28:28s.  Time for last 1,000,000:    8s.  Last read position: chr6:30,720,432
INFO	2026-06-03 20:14:25	SinglePassSamProgram	Processed   115,000,000 records.  Elapsed time: 00:28:45s.  Time for last 1,000,000:   16s.  Last read position: chr6:31,631,828
INFO	2026-06-03 20:14:35	SinglePassSamProgram	Processed   116,000,000 records.  Elapsed time: 00:28:55s.  Time for last 1,000,000:   10s.  Last read position: chr6:31,956,979
INFO	2026-06-03 20:14:45	SinglePassSamProgram	Processed   117,000,000 records.  Elapsed time: 00:29:05s.  Time for last 1,000,000:    9s.  Last read position: chr6:33,290,755
INFO	2026-06-03 20:14:54	SinglePassSamProgram	Processed   118,000,000 records.  Elapsed time: 00:29:13s.  Time for last 1,000,000:    8s.  Last read position: chr6:35,470,578
INFO	2026-06-03 20:15:00	SinglePassSamProgram	Processed   119,000,000 records.  Elapsed time: 00:29:20s.  Time for last 1,000,000:    6s.  Last read position: chr6:43,019,125
INFO	2026-06-03 20:15:09	SinglePassSamProgram	Processed   120,000,000 records.  Elapsed time: 00:29:29s.  Time for last 1,000,000:    9s.  Last read position: chr6:47,286,210
INFO	2026-06-03 20:16:00	SinglePassSamProgram	Processed   121,000,000 records.  Elapsed time: 00:30:19s.  Time for last 1,000,000:   50s.  Last read position: chr6:63,685,295
INFO	2026-06-03 20:16:15	SinglePassSamProgram	Processed   122,000,000 records.  Elapsed time: 00:30:34s.  Time for last 1,000,000:   15s.  Last read position: chr6:89,352,548
INFO	2026-06-03 20:16:23	SinglePassSamProgram	Processed   123,000,000 records.  Elapsed time: 00:30:43s.  Time for last 1,000,000:    8s.  Last read position: chr6:110,967,613
INFO	2026-06-03 20:16:34	SinglePassSamProgram	Processed   124,000,000 records.  Elapsed time: 00:30:54s.  Time for last 1,000,000:   11s.  Last read position: chr6:130,869,797
INFO	2026-06-03 20:16:54	SinglePassSamProgram	Processed   125,000,000 records.  Elapsed time: 00:31:14s.  Time for last 1,000,000:   20s.  Last read position: chr6:138,945,360
INFO	2026-06-03 20:17:08	SinglePassSamProgram	Processed   126,000,000 records.  Elapsed time: 00:31:28s.  Time for last 1,000,000:   13s.  Last read position: chr6:154,832,966
INFO	2026-06-03 20:17:17	SinglePassSamProgram	Processed   127,000,000 records.  Elapsed time: 00:31:37s.  Time for last 1,000,000:    9s.  Last read position: chr6:160,069,907
INFO	2026-06-03 20:17:36	SinglePassSamProgram	Processed   128,000,000 records.  Elapsed time: 00:31:56s.  Time for last 1,000,000:   18s.  Last read position: chr7:1,435,148
INFO	2026-06-03 20:17:43	SinglePassSamProgram	Processed   129,000,000 records.  Elapsed time: 00:32:03s.  Time for last 1,000,000:    6s.  Last read position: chr7:5,362,689
INFO	2026-06-03 20:17:53	SinglePassSamProgram	Processed   130,000,000 records.  Elapsed time: 00:32:13s.  Time for last 1,000,000:    9s.  Last read position: chr7:5,923,945
INFO	2026-06-03 20:18:07	SinglePassSamProgram	Processed   131,000,000 records.  Elapsed time: 00:32:26s.  Time for last 1,000,000:   13s.  Last read position: chr7:27,145,607
INFO	2026-06-03 20:18:15	SinglePassSamProgram	Processed   132,000,000 records.  Elapsed time: 00:32:35s.  Time for last 1,000,000:    8s.  Last read position: chr7:44,104,844
INFO	2026-06-03 20:18:25	SinglePassSamProgram	Processed   133,000,000 records.  Elapsed time: 00:32:45s.  Time for last 1,000,000:   10s.  Last read position: chr7:55,687,835
INFO	2026-06-03 20:18:31	SinglePassSamProgram	Processed   134,000,000 records.  Elapsed time: 00:32:51s.  Time for last 1,000,000:    6s.  Last read position: chr7:73,296,877
INFO	2026-06-03 20:18:39	SinglePassSamProgram	Processed   135,000,000 records.  Elapsed time: 00:32:58s.  Time for last 1,000,000:    7s.  Last read position: chr7:75,395,285
INFO	2026-06-03 20:18:43	SinglePassSamProgram	Processed   136,000,000 records.  Elapsed time: 00:33:02s.  Time for last 1,000,000:    4s.  Last read position: chr7:77,053,106
INFO	2026-06-03 20:19:32	SinglePassSamProgram	Processed   137,000,000 records.  Elapsed time: 00:33:51s.  Time for last 1,000,000:   49s.  Last read position: chr7:93,926,138
INFO	2026-06-03 20:19:46	SinglePassSamProgram	Processed   138,000,000 records.  Elapsed time: 00:34:05s.  Time for last 1,000,000:   13s.  Last read position: chr7:99,666,994
INFO	2026-06-03 20:19:54	SinglePassSamProgram	Processed   139,000,000 records.  Elapsed time: 00:34:14s.  Time for last 1,000,000:    8s.  Last read position: chr7:100,805,561
INFO	2026-06-03 20:19:58	SinglePassSamProgram	Processed   140,000,000 records.  Elapsed time: 00:34:18s.  Time for last 1,000,000:    4s.  Last read position: chr7:100,991,457
INFO	2026-06-03 20:20:01	SinglePassSamProgram	Processed   141,000,000 records.  Elapsed time: 00:34:21s.  Time for last 1,000,000:    2s.  Last read position: chr7:100,992,360
INFO	2026-06-03 20:20:03	SinglePassSamProgram	Processed   142,000,000 records.  Elapsed time: 00:34:23s.  Time for last 1,000,000:    2s.  Last read position: chr7:100,992,858
INFO	2026-06-03 20:20:05	SinglePassSamProgram	Processed   143,000,000 records.  Elapsed time: 00:34:25s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,993,161
INFO	2026-06-03 20:20:06	SinglePassSamProgram	Processed   144,000,000 records.  Elapsed time: 00:34:26s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,993,592
INFO	2026-06-03 20:20:07	SinglePassSamProgram	Processed   145,000,000 records.  Elapsed time: 00:34:27s.  Time for last 1,000,000:    0s.  Last read position: chr7:100,993,772
INFO	2026-06-03 20:20:09	SinglePassSamProgram	Processed   146,000,000 records.  Elapsed time: 00:34:28s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,994,136
INFO	2026-06-03 20:20:10	SinglePassSamProgram	Processed   147,000,000 records.  Elapsed time: 00:34:29s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,994,655
INFO	2026-06-03 20:20:10	SinglePassSamProgram	Processed   148,000,000 records.  Elapsed time: 00:34:30s.  Time for last 1,000,000:    0s.  Last read position: chr7:100,994,929
INFO	2026-06-03 20:20:11	SinglePassSamProgram	Processed   149,000,000 records.  Elapsed time: 00:34:31s.  Time for last 1,000,000:    0s.  Last read position: chr7:100,995,220
INFO	2026-06-03 20:20:12	SinglePassSamProgram	Processed   150,000,000 records.  Elapsed time: 00:34:32s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,995,664
INFO	2026-06-03 20:20:13	SinglePassSamProgram	Processed   151,000,000 records.  Elapsed time: 00:34:33s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,996,041
INFO	2026-06-03 20:20:14	SinglePassSamProgram	Processed   152,000,000 records.  Elapsed time: 00:34:34s.  Time for last 1,000,000:    0s.  Last read position: chr7:100,996,280
INFO	2026-06-03 20:20:15	SinglePassSamProgram	Processed   153,000,000 records.  Elapsed time: 00:34:35s.  Time for last 1,000,000:    0s.  Last read position: chr7:100,996,400
INFO	2026-06-03 20:20:17	SinglePassSamProgram	Processed   154,000,000 records.  Elapsed time: 00:34:37s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,996,518
INFO	2026-06-03 20:20:19	SinglePassSamProgram	Processed   155,000,000 records.  Elapsed time: 00:34:39s.  Time for last 1,000,000:    2s.  Last read position: chr7:100,996,743
INFO	2026-06-03 20:20:22	SinglePassSamProgram	Processed   156,000,000 records.  Elapsed time: 00:34:42s.  Time for last 1,000,000:    2s.  Last read position: chr7:100,996,843
INFO	2026-06-03 20:20:24	SinglePassSamProgram	Processed   157,000,000 records.  Elapsed time: 00:34:44s.  Time for last 1,000,000:    2s.  Last read position: chr7:100,997,030
INFO	2026-06-03 20:20:26	SinglePassSamProgram	Processed   158,000,000 records.  Elapsed time: 00:34:46s.  Time for last 1,000,000:    2s.  Last read position: chr7:100,997,234
INFO	2026-06-03 20:20:29	SinglePassSamProgram	Processed   159,000,000 records.  Elapsed time: 00:34:49s.  Time for last 1,000,000:    2s.  Last read position: chr7:100,997,504
INFO	2026-06-03 20:20:31	SinglePassSamProgram	Processed   160,000,000 records.  Elapsed time: 00:34:51s.  Time for last 1,000,000:    2s.  Last read position: chr7:100,997,809
INFO	2026-06-03 20:20:32	SinglePassSamProgram	Processed   161,000,000 records.  Elapsed time: 00:34:52s.  Time for last 1,000,000:    0s.  Last read position: chr7:100,997,928
INFO	2026-06-03 20:20:34	SinglePassSamProgram	Processed   162,000,000 records.  Elapsed time: 00:34:53s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,998,064
INFO	2026-06-03 20:20:34	SinglePassSamProgram	Processed   163,000,000 records.  Elapsed time: 00:34:54s.  Time for last 1,000,000:    0s.  Last read position: chr7:100,998,266
INFO	2026-06-03 20:20:35	SinglePassSamProgram	Processed   164,000,000 records.  Elapsed time: 00:34:55s.  Time for last 1,000,000:    0s.  Last read position: chr7:100,998,458
INFO	2026-06-03 20:20:36	SinglePassSamProgram	Processed   165,000,000 records.  Elapsed time: 00:34:55s.  Time for last 1,000,000:    0s.  Last read position: chr7:100,998,646
INFO	2026-06-03 20:20:37	SinglePassSamProgram	Processed   166,000,000 records.  Elapsed time: 00:34:57s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,998,822
INFO	2026-06-03 20:20:38	SinglePassSamProgram	Processed   167,000,000 records.  Elapsed time: 00:34:58s.  Time for last 1,000,000:    0s.  Last read position: chr7:100,999,010
INFO	2026-06-03 20:20:40	SinglePassSamProgram	Processed   168,000,000 records.  Elapsed time: 00:34:59s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,999,440
INFO	2026-06-03 20:20:42	SinglePassSamProgram	Processed   169,000,000 records.  Elapsed time: 00:35:01s.  Time for last 1,000,000:    2s.  Last read position: chr7:100,999,694
INFO	2026-06-03 20:20:44	SinglePassSamProgram	Processed   170,000,000 records.  Elapsed time: 00:35:03s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,999,961
INFO	2026-06-03 20:20:46	SinglePassSamProgram	Processed   171,000,000 records.  Elapsed time: 00:35:06s.  Time for last 1,000,000:    2s.  Last read position: chr7:101,000,168
INFO	2026-06-03 20:20:48	SinglePassSamProgram	Processed   172,000,000 records.  Elapsed time: 00:35:07s.  Time for last 1,000,000:    1s.  Last read position: chr7:101,000,415
INFO	2026-06-03 20:20:49	SinglePassSamProgram	Processed   173,000,000 records.  Elapsed time: 00:35:09s.  Time for last 1,000,000:    1s.  Last read position: chr7:101,000,662
INFO	2026-06-03 20:20:51	SinglePassSamProgram	Processed   174,000,000 records.  Elapsed time: 00:35:11s.  Time for last 1,000,000:    1s.  Last read position: chr7:101,000,871
INFO	2026-06-03 20:20:54	SinglePassSamProgram	Processed   175,000,000 records.  Elapsed time: 00:35:13s.  Time for last 1,000,000:    2s.  Last read position: chr7:101,001,048
INFO	2026-06-03 20:20:55	SinglePassSamProgram	Processed   176,000,000 records.  Elapsed time: 00:35:15s.  Time for last 1,000,000:    1s.  Last read position: chr7:101,001,316
INFO	2026-06-03 20:20:56	SinglePassSamProgram	Processed   177,000,000 records.  Elapsed time: 00:35:16s.  Time for last 1,000,000:    0s.  Last read position: chr7:101,001,436
INFO	2026-06-03 20:20:57	SinglePassSamProgram	Processed   178,000,000 records.  Elapsed time: 00:35:17s.  Time for last 1,000,000:    0s.  Last read position: chr7:101,001,556
INFO	2026-06-03 20:20:58	SinglePassSamProgram	Processed   179,000,000 records.  Elapsed time: 00:35:17s.  Time for last 1,000,000:    0s.  Last read position: chr7:101,001,778
INFO	2026-06-03 20:20:58	SinglePassSamProgram	Processed   180,000,000 records.  Elapsed time: 00:35:18s.  Time for last 1,000,000:    0s.  Last read position: chr7:101,002,055
INFO	2026-06-03 20:20:59	SinglePassSamProgram	Processed   181,000,000 records.  Elapsed time: 00:35:19s.  Time for last 1,000,000:    0s.  Last read position: chr7:101,002,345
INFO	2026-06-03 20:21:01	SinglePassSamProgram	Processed   182,000,000 records.  Elapsed time: 00:35:21s.  Time for last 1,000,000:    2s.  Last read position: chr7:101,002,577
INFO	2026-06-03 20:21:03	SinglePassSamProgram	Processed   183,000,000 records.  Elapsed time: 00:35:23s.  Time for last 1,000,000:    1s.  Last read position: chr7:101,003,173
INFO	2026-06-03 20:21:05	SinglePassSamProgram	Processed   184,000,000 records.  Elapsed time: 00:35:24s.  Time for last 1,000,000:    1s.  Last read position: chr7:101,003,741
INFO	2026-06-03 20:21:06	SinglePassSamProgram	Processed   185,000,000 records.  Elapsed time: 00:35:25s.  Time for last 1,000,000:    0s.  Last read position: chr7:101,004,046
INFO	2026-06-03 20:21:08	SinglePassSamProgram	Processed   186,000,000 records.  Elapsed time: 00:35:27s.  Time for last 1,000,000:    1s.  Last read position: chr7:101,008,737
INFO	2026-06-03 20:21:16	SinglePassSamProgram	Processed   187,000,000 records.  Elapsed time: 00:35:36s.  Time for last 1,000,000:    8s.  Last read position: chr7:102,640,231
INFO	2026-06-03 20:21:35	SinglePassSamProgram	Processed   188,000,000 records.  Elapsed time: 00:35:55s.  Time for last 1,000,000:   19s.  Last read position: chr7:108,565,848
INFO	2026-06-03 20:21:44	SinglePassSamProgram	Processed   189,000,000 records.  Elapsed time: 00:36:04s.  Time for last 1,000,000:    8s.  Last read position: chr7:128,846,758
INFO	2026-06-03 20:21:52	SinglePassSamProgram	Processed   190,000,000 records.  Elapsed time: 00:36:11s.  Time for last 1,000,000:    7s.  Last read position: chr7:139,572,962
INFO	2026-06-03 20:21:58	SinglePassSamProgram	Processed   191,000,000 records.  Elapsed time: 00:36:18s.  Time for last 1,000,000:    6s.  Last read position: chr7:144,282,267
INFO	2026-06-03 20:22:01	SinglePassSamProgram	Processed   192,000,000 records.  Elapsed time: 00:36:21s.  Time for last 1,000,000:    3s.  Last read position: chr7:150,369,765
INFO	2026-06-03 20:22:17	SinglePassSamProgram	Processed   193,000,000 records.  Elapsed time: 00:36:37s.  Time for last 1,000,000:   16s.  Last read position: chr7:152,263,063
INFO	2026-06-03 20:22:27	SinglePassSamProgram	Processed   194,000,000 records.  Elapsed time: 00:36:46s.  Time for last 1,000,000:    9s.  Last read position: chr8:9,556,443
INFO	2026-06-03 20:22:41	SinglePassSamProgram	Processed   195,000,000 records.  Elapsed time: 00:37:01s.  Time for last 1,000,000:   14s.  Last read position: chr8:22,572,400
INFO	2026-06-03 20:22:51	SinglePassSamProgram	Processed   196,000,000 records.  Elapsed time: 00:37:11s.  Time for last 1,000,000:   10s.  Last read position: chr8:29,092,775
INFO	2026-06-03 20:22:58	SinglePassSamProgram	Processed   197,000,000 records.  Elapsed time: 00:37:17s.  Time for last 1,000,000:    6s.  Last read position: chr8:38,110,401
INFO	2026-06-03 20:23:14	SinglePassSamProgram	Processed   198,000,000 records.  Elapsed time: 00:37:34s.  Time for last 1,000,000:   16s.  Last read position: chr8:47,599,159
INFO	2026-06-03 20:23:27	SinglePassSamProgram	Processed   199,000,000 records.  Elapsed time: 00:37:46s.  Time for last 1,000,000:   12s.  Last read position: chr8:70,131,891
INFO	2026-06-03 20:23:35	SinglePassSamProgram	Processed   200,000,000 records.  Elapsed time: 00:37:54s.  Time for last 1,000,000:    7s.  Last read position: chr8:94,865,457
INFO	2026-06-03 20:23:54	SinglePassSamProgram	Processed   201,000,000 records.  Elapsed time: 00:38:13s.  Time for last 1,000,000:   19s.  Last read position: chr8:116,645,086
INFO	2026-06-03 20:24:03	SinglePassSamProgram	Processed   202,000,000 records.  Elapsed time: 00:38:23s.  Time for last 1,000,000:    9s.  Last read position: chr8:133,259,205
INFO	2026-06-03 20:24:16	SinglePassSamProgram	Processed   203,000,000 records.  Elapsed time: 00:38:36s.  Time for last 1,000,000:   13s.  Last read position: chr8:143,728,498
INFO	2026-06-03 20:24:20	SinglePassSamProgram	Processed   204,000,000 records.  Elapsed time: 00:38:40s.  Time for last 1,000,000:    3s.  Last read position: chr8:143,859,877
INFO	2026-06-03 20:24:21	SinglePassSamProgram	Processed   205,000,000 records.  Elapsed time: 00:38:41s.  Time for last 1,000,000:    0s.  Last read position: chr8:143,862,053
INFO	2026-06-03 20:24:22	SinglePassSamProgram	Processed   206,000,000 records.  Elapsed time: 00:38:42s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,864,400
INFO	2026-06-03 20:24:23	SinglePassSamProgram	Processed   207,000,000 records.  Elapsed time: 00:38:42s.  Time for last 1,000,000:    0s.  Last read position: chr8:143,867,772
INFO	2026-06-03 20:24:28	SinglePassSamProgram	Processed   208,000,000 records.  Elapsed time: 00:38:48s.  Time for last 1,000,000:    5s.  Last read position: chr8:143,924,547
INFO	2026-06-03 20:24:44	SinglePassSamProgram	Processed   209,000,000 records.  Elapsed time: 00:39:04s.  Time for last 1,000,000:   16s.  Last read position: chr8:144,318,304
INFO	2026-06-03 20:24:52	SinglePassSamProgram	Processed   210,000,000 records.  Elapsed time: 00:39:12s.  Time for last 1,000,000:    8s.  Last read position: chr9:730,170
INFO	2026-06-03 20:25:08	SinglePassSamProgram	Processed   211,000,000 records.  Elapsed time: 00:39:27s.  Time for last 1,000,000:   15s.  Last read position: chr9:20,622,288
INFO	2026-06-03 20:25:17	SinglePassSamProgram	Processed   212,000,000 records.  Elapsed time: 00:39:36s.  Time for last 1,000,000:    9s.  Last read position: chr9:35,377,664
INFO	2026-06-03 20:25:24	SinglePassSamProgram	Processed   213,000,000 records.  Elapsed time: 00:39:43s.  Time for last 1,000,000:    7s.  Last read position: chr9:64,842,206
INFO	2026-06-03 20:25:36	SinglePassSamProgram	Processed   214,000,000 records.  Elapsed time: 00:39:55s.  Time for last 1,000,000:   11s.  Last read position: chr9:83,971,293
INFO	2026-06-03 20:25:46	SinglePassSamProgram	Processed   215,000,000 records.  Elapsed time: 00:40:06s.  Time for last 1,000,000:   10s.  Last read position: chr9:93,292,788
INFO	2026-06-03 20:25:54	SinglePassSamProgram	Processed   216,000,000 records.  Elapsed time: 00:40:14s.  Time for last 1,000,000:    7s.  Last read position: chr9:101,390,837
INFO	2026-06-03 20:26:03	SinglePassSamProgram	Processed   217,000,000 records.  Elapsed time: 00:40:23s.  Time for last 1,000,000:    9s.  Last read position: chr9:113,193,441
INFO	2026-06-03 20:26:15	SinglePassSamProgram	Processed   218,000,000 records.  Elapsed time: 00:40:35s.  Time for last 1,000,000:   11s.  Last read position: chr9:121,759,980
INFO	2026-06-03 20:26:25	SinglePassSamProgram	Processed   219,000,000 records.  Elapsed time: 00:40:44s.  Time for last 1,000,000:    9s.  Last read position: chr9:127,867,963
INFO	2026-06-03 20:26:43	SinglePassSamProgram	Processed   220,000,000 records.  Elapsed time: 00:41:02s.  Time for last 1,000,000:   18s.  Last read position: chr9:128,633,220
INFO	2026-06-03 20:26:50	SinglePassSamProgram	Processed   221,000,000 records.  Elapsed time: 00:41:09s.  Time for last 1,000,000:    6s.  Last read position: chr9:131,066,995
INFO	2026-06-03 20:26:59	SinglePassSamProgram	Processed   222,000,000 records.  Elapsed time: 00:41:19s.  Time for last 1,000,000:    9s.  Last read position: chr9:133,797,800
INFO	2026-06-03 20:27:10	SinglePassSamProgram	Processed   223,000,000 records.  Elapsed time: 00:41:30s.  Time for last 1,000,000:   11s.  Last read position: chr9:136,476,871
INFO	2026-06-03 20:27:25	SinglePassSamProgram	Processed   224,000,000 records.  Elapsed time: 00:41:45s.  Time for last 1,000,000:   14s.  Last read position: chr9:137,015,752
INFO	2026-06-03 20:27:33	SinglePassSamProgram	Processed   225,000,000 records.  Elapsed time: 00:41:53s.  Time for last 1,000,000:    7s.  Last read position: chr9:137,551,929
INFO	2026-06-03 20:27:44	SinglePassSamProgram	Processed   226,000,000 records.  Elapsed time: 00:42:04s.  Time for last 1,000,000:   11s.  Last read position: chr10:12,374,611
INFO	2026-06-03 20:27:57	SinglePassSamProgram	Processed   227,000,000 records.  Elapsed time: 00:42:16s.  Time for last 1,000,000:   12s.  Last read position: chr10:28,595,853
INFO	2026-06-03 20:28:09	SinglePassSamProgram	Processed   228,000,000 records.  Elapsed time: 00:42:28s.  Time for last 1,000,000:   12s.  Last read position: chr10:43,387,054
INFO	2026-06-03 20:28:13	SinglePassSamProgram	Processed   229,000,000 records.  Elapsed time: 00:42:33s.  Time for last 1,000,000:    4s.  Last read position: chr10:50,068,162
INFO	2026-06-03 20:28:23	SinglePassSamProgram	Processed   230,000,000 records.  Elapsed time: 00:42:42s.  Time for last 1,000,000:    9s.  Last read position: chr10:70,153,850
INFO	2026-06-03 20:28:34	SinglePassSamProgram	Processed   231,000,000 records.  Elapsed time: 00:42:54s.  Time for last 1,000,000:   11s.  Last read position: chr10:75,211,140
INFO	2026-06-03 20:28:48	SinglePassSamProgram	Processed   232,000,000 records.  Elapsed time: 00:43:08s.  Time for last 1,000,000:   14s.  Last read position: chr10:86,943,397
INFO	2026-06-03 20:28:56	SinglePassSamProgram	Processed   233,000,000 records.  Elapsed time: 00:43:16s.  Time for last 1,000,000:    7s.  Last read position: chr10:95,271,716
INFO	2026-06-03 20:29:07	SinglePassSamProgram	Processed   234,000,000 records.  Elapsed time: 00:43:27s.  Time for last 1,000,000:   11s.  Last read position: chr10:100,984,737
INFO	2026-06-03 20:29:26	SinglePassSamProgram	Processed   235,000,000 records.  Elapsed time: 00:43:45s.  Time for last 1,000,000:   18s.  Last read position: chr10:103,661,018
INFO	2026-06-03 20:29:39	SinglePassSamProgram	Processed   236,000,000 records.  Elapsed time: 00:43:58s.  Time for last 1,000,000:   13s.  Last read position: chr10:116,944,965
INFO	2026-06-03 20:29:49	SinglePassSamProgram	Processed   237,000,000 records.  Elapsed time: 00:44:08s.  Time for last 1,000,000:   10s.  Last read position: chr10:124,992,785
INFO	2026-06-03 20:29:55	SinglePassSamProgram	Processed   238,000,000 records.  Elapsed time: 00:44:15s.  Time for last 1,000,000:    6s.  Last read position: chr11:314,943
INFO	2026-06-03 20:30:02	SinglePassSamProgram	Processed   239,000,000 records.  Elapsed time: 00:44:22s.  Time for last 1,000,000:    6s.  Last read position: chr11:618,845
INFO	2026-06-03 20:30:12	SinglePassSamProgram	Processed   240,000,000 records.  Elapsed time: 00:44:32s.  Time for last 1,000,000:    9s.  Last read position: chr11:1,075,773
INFO	2026-06-03 20:30:17	SinglePassSamProgram	Processed   241,000,000 records.  Elapsed time: 00:44:37s.  Time for last 1,000,000:    5s.  Last read position: chr11:1,085,826
INFO	2026-06-03 20:30:26	SinglePassSamProgram	Processed   242,000,000 records.  Elapsed time: 00:44:46s.  Time for last 1,000,000:    9s.  Last read position: chr11:1,098,949
INFO	2026-06-03 20:30:34	SinglePassSamProgram	Processed   243,000,000 records.  Elapsed time: 00:44:53s.  Time for last 1,000,000:    7s.  Last read position: chr11:1,243,068
INFO	2026-06-03 20:30:38	SinglePassSamProgram	Processed   244,000,000 records.  Elapsed time: 00:44:58s.  Time for last 1,000,000:    4s.  Last read position: chr11:1,244,379
INFO	2026-06-03 20:30:41	SinglePassSamProgram	Processed   245,000,000 records.  Elapsed time: 00:45:01s.  Time for last 1,000,000:    3s.  Last read position: chr11:1,245,252
INFO	2026-06-03 20:30:47	SinglePassSamProgram	Processed   246,000,000 records.  Elapsed time: 00:45:07s.  Time for last 1,000,000:    6s.  Last read position: chr11:1,247,003
INFO	2026-06-03 20:30:52	SinglePassSamProgram	Processed   247,000,000 records.  Elapsed time: 00:45:12s.  Time for last 1,000,000:    4s.  Last read position: chr11:1,248,264
INFO	2026-06-03 20:31:00	SinglePassSamProgram	Processed   248,000,000 records.  Elapsed time: 00:45:19s.  Time for last 1,000,000:    7s.  Last read position: chr11:1,249,463
INFO	2026-06-03 20:31:08	SinglePassSamProgram	Processed   249,000,000 records.  Elapsed time: 00:45:27s.  Time for last 1,000,000:    7s.  Last read position: chr11:1,250,918
INFO	2026-06-03 20:31:16	SinglePassSamProgram	Processed   250,000,000 records.  Elapsed time: 00:45:36s.  Time for last 1,000,000:    8s.  Last read position: chr11:2,929,108
INFO	2026-06-03 20:31:26	SinglePassSamProgram	Processed   251,000,000 records.  Elapsed time: 00:45:46s.  Time for last 1,000,000:    9s.  Last read position: chr11:8,707,102
INFO	2026-06-03 20:31:43	SinglePassSamProgram	Processed   252,000,000 records.  Elapsed time: 00:46:02s.  Time for last 1,000,000:   16s.  Last read position: chr11:17,074,415
INFO	2026-06-03 20:31:52	SinglePassSamProgram	Processed   253,000,000 records.  Elapsed time: 00:46:11s.  Time for last 1,000,000:    8s.  Last read position: chr11:43,443,366
INFO	2026-06-03 20:32:00	SinglePassSamProgram	Processed   254,000,000 records.  Elapsed time: 00:46:20s.  Time for last 1,000,000:    8s.  Last read position: chr11:46,899,882
INFO	2026-06-03 20:32:11	SinglePassSamProgram	Processed   255,000,000 records.  Elapsed time: 00:46:30s.  Time for last 1,000,000:   10s.  Last read position: chr11:57,796,833
INFO	2026-06-03 20:32:28	SinglePassSamProgram	Processed   256,000,000 records.  Elapsed time: 00:46:48s.  Time for last 1,000,000:   17s.  Last read position: chr11:61,967,320
INFO	2026-06-03 20:32:32	SinglePassSamProgram	Processed   257,000,000 records.  Elapsed time: 00:46:51s.  Time for last 1,000,000:    3s.  Last read position: chr11:62,593,916
INFO	2026-06-03 20:32:41	SinglePassSamProgram	Processed   258,000,000 records.  Elapsed time: 00:47:01s.  Time for last 1,000,000:    9s.  Last read position: chr11:64,258,941
INFO	2026-06-03 20:32:50	SinglePassSamProgram	Processed   259,000,000 records.  Elapsed time: 00:47:10s.  Time for last 1,000,000:    8s.  Last read position: chr11:65,120,759
INFO	2026-06-03 20:32:58	SinglePassSamProgram	Processed   260,000,000 records.  Elapsed time: 00:47:18s.  Time for last 1,000,000:    8s.  Last read position: chr11:65,654,413
INFO	2026-06-03 20:33:06	SinglePassSamProgram	Processed   261,000,000 records.  Elapsed time: 00:47:26s.  Time for last 1,000,000:    8s.  Last read position: chr11:66,643,564
INFO	2026-06-03 20:33:18	SinglePassSamProgram	Processed   262,000,000 records.  Elapsed time: 00:47:37s.  Time for last 1,000,000:   11s.  Last read position: chr11:68,045,008
INFO	2026-06-03 20:33:26	SinglePassSamProgram	Processed   263,000,000 records.  Elapsed time: 00:47:46s.  Time for last 1,000,000:    8s.  Last read position: chr11:70,820,647
INFO	2026-06-03 20:33:48	SinglePassSamProgram	Processed   264,000,000 records.  Elapsed time: 00:48:08s.  Time for last 1,000,000:   22s.  Last read position: chr11:73,311,058
INFO	2026-06-03 20:33:58	SinglePassSamProgram	Processed   265,000,000 records.  Elapsed time: 00:48:18s.  Time for last 1,000,000:   10s.  Last read position: chr11:83,157,510
INFO	2026-06-03 20:34:10	SinglePassSamProgram	Processed   266,000,000 records.  Elapsed time: 00:48:30s.  Time for last 1,000,000:   11s.  Last read position: chr11:102,205,911
INFO	2026-06-03 20:34:19	SinglePassSamProgram	Processed   267,000,000 records.  Elapsed time: 00:48:38s.  Time for last 1,000,000:    8s.  Last read position: chr11:117,207,965
INFO	2026-06-03 20:34:30	SinglePassSamProgram	Processed   268,000,000 records.  Elapsed time: 00:48:49s.  Time for last 1,000,000:   10s.  Last read position: chr11:119,056,092
INFO	2026-06-03 20:34:39	SinglePassSamProgram	Processed   269,000,000 records.  Elapsed time: 00:48:58s.  Time for last 1,000,000:    9s.  Last read position: chr11:126,271,525
INFO	2026-06-03 20:34:46	SinglePassSamProgram	Processed   270,000,000 records.  Elapsed time: 00:49:06s.  Time for last 1,000,000:    7s.  Last read position: chr12:754,065
INFO	2026-06-03 20:35:01	SinglePassSamProgram	Processed   271,000,000 records.  Elapsed time: 00:49:21s.  Time for last 1,000,000:   15s.  Last read position: chr12:6,374,705
INFO	2026-06-03 20:35:22	SinglePassSamProgram	Processed   272,000,000 records.  Elapsed time: 00:49:42s.  Time for last 1,000,000:   20s.  Last read position: chr12:6,970,939
INFO	2026-06-03 20:35:28	SinglePassSamProgram	Processed   273,000,000 records.  Elapsed time: 00:49:48s.  Time for last 1,000,000:    6s.  Last read position: chr12:12,721,035
INFO	2026-06-03 20:35:38	SinglePassSamProgram	Processed   274,000,000 records.  Elapsed time: 00:49:58s.  Time for last 1,000,000:    9s.  Last read position: chr12:31,103,769
INFO	2026-06-03 20:35:51	SinglePassSamProgram	Processed   275,000,000 records.  Elapsed time: 00:50:10s.  Time for last 1,000,000:   12s.  Last read position: chr12:48,938,971
INFO	2026-06-03 20:35:58	SinglePassSamProgram	Processed   276,000,000 records.  Elapsed time: 00:50:18s.  Time for last 1,000,000:    7s.  Last read position: chr12:49,642,243
INFO	2026-06-03 20:36:06	SinglePassSamProgram	Processed   277,000,000 records.  Elapsed time: 00:50:26s.  Time for last 1,000,000:    8s.  Last read position: chr12:52,904,801
INFO	2026-06-03 20:36:18	SinglePassSamProgram	Processed   278,000,000 records.  Elapsed time: 00:50:38s.  Time for last 1,000,000:   12s.  Last read position: chr12:54,183,740
INFO	2026-06-03 20:36:33	SinglePassSamProgram	Processed   279,000,000 records.  Elapsed time: 00:50:53s.  Time for last 1,000,000:   14s.  Last read position: chr12:56,163,753
INFO	2026-06-03 20:36:46	SinglePassSamProgram	Processed   280,000,000 records.  Elapsed time: 00:51:06s.  Time for last 1,000,000:   12s.  Last read position: chr12:57,096,581
INFO	2026-06-03 20:37:03	SinglePassSamProgram	Processed   281,000,000 records.  Elapsed time: 00:51:23s.  Time for last 1,000,000:   16s.  Last read position: chr12:57,474,872
INFO	2026-06-03 20:37:14	SinglePassSamProgram	Processed   282,000,000 records.  Elapsed time: 00:51:33s.  Time for last 1,000,000:   10s.  Last read position: chr12:68,731,707
INFO	2026-06-03 20:37:24	SinglePassSamProgram	Processed   283,000,000 records.  Elapsed time: 00:51:44s.  Time for last 1,000,000:   10s.  Last read position: chr12:93,395,487
INFO	2026-06-03 20:37:34	SinglePassSamProgram	Processed   284,000,000 records.  Elapsed time: 00:51:54s.  Time for last 1,000,000:   10s.  Last read position: chr12:108,526,443
INFO	2026-06-03 20:37:48	SinglePassSamProgram	Processed   285,000,000 records.  Elapsed time: 00:52:08s.  Time for last 1,000,000:   13s.  Last read position: chr12:112,265,956
INFO	2026-06-03 20:38:02	SinglePassSamProgram	Processed   286,000,000 records.  Elapsed time: 00:52:22s.  Time for last 1,000,000:   13s.  Last read position: chr12:120,178,852
INFO	2026-06-03 20:38:11	SinglePassSamProgram	Processed   287,000,000 records.  Elapsed time: 00:52:30s.  Time for last 1,000,000:    8s.  Last read position: chr12:122,133,424
INFO	2026-06-03 20:38:19	SinglePassSamProgram	Processed   288,000,000 records.  Elapsed time: 00:52:39s.  Time for last 1,000,000:    8s.  Last read position: chr12:124,336,758
INFO	2026-06-03 20:38:37	SinglePassSamProgram	Processed   289,000,000 records.  Elapsed time: 00:52:56s.  Time for last 1,000,000:   17s.  Last read position: chr12:132,066,880
INFO	2026-06-03 20:38:46	SinglePassSamProgram	Processed   290,000,000 records.  Elapsed time: 00:53:05s.  Time for last 1,000,000:    9s.  Last read position: chr13:20,189,225
INFO	2026-06-03 20:38:52	SinglePassSamProgram	Processed   291,000,000 records.  Elapsed time: 00:53:12s.  Time for last 1,000,000:    6s.  Last read position: chr13:33,185,860
INFO	2026-06-03 20:39:00	SinglePassSamProgram	Processed   292,000,000 records.  Elapsed time: 00:53:20s.  Time for last 1,000,000:    7s.  Last read position: chr13:49,196,925
INFO	2026-06-03 20:39:10	SinglePassSamProgram	Processed   293,000,000 records.  Elapsed time: 00:53:30s.  Time for last 1,000,000:   10s.  Last read position: chr13:77,899,960
INFO	2026-06-03 20:39:21	SinglePassSamProgram	Processed   294,000,000 records.  Elapsed time: 00:53:41s.  Time for last 1,000,000:   11s.  Last read position: chr13:110,183,252
INFO	2026-06-03 20:39:36	SinglePassSamProgram	Processed   295,000,000 records.  Elapsed time: 00:53:56s.  Time for last 1,000,000:   14s.  Last read position: chr13:113,319,605
INFO	2026-06-03 20:39:50	SinglePassSamProgram	Processed   296,000,000 records.  Elapsed time: 00:54:09s.  Time for last 1,000,000:   13s.  Last read position: chr14:22,845,991
INFO	2026-06-03 20:39:59	SinglePassSamProgram	Processed   297,000,000 records.  Elapsed time: 00:54:19s.  Time for last 1,000,000:    9s.  Last read position: chr14:24,210,457
INFO	2026-06-03 20:40:12	SinglePassSamProgram	Processed   298,000,000 records.  Elapsed time: 00:54:32s.  Time for last 1,000,000:   12s.  Last read position: chr14:39,181,105
INFO	2026-06-03 20:40:19	SinglePassSamProgram	Processed   299,000,000 records.  Elapsed time: 00:54:39s.  Time for last 1,000,000:    7s.  Last read position: chr14:55,145,137
INFO	2026-06-03 20:40:50	SinglePassSamProgram	Processed   300,000,000 records.  Elapsed time: 00:55:09s.  Time for last 1,000,000:   30s.  Last read position: chr14:64,932,202
INFO	2026-06-03 20:41:01	SinglePassSamProgram	Processed   301,000,000 records.  Elapsed time: 00:55:21s.  Time for last 1,000,000:   11s.  Last read position: chr14:73,217,233
INFO	2026-06-03 20:41:09	SinglePassSamProgram	Processed   302,000,000 records.  Elapsed time: 00:55:29s.  Time for last 1,000,000:    8s.  Last read position: chr14:76,082,299
INFO	2026-06-03 20:41:18	SinglePassSamProgram	Processed   303,000,000 records.  Elapsed time: 00:55:37s.  Time for last 1,000,000:    8s.  Last read position: chr14:93,294,758
INFO	2026-06-03 20:42:19	SinglePassSamProgram	Processed   304,000,000 records.  Elapsed time: 00:56:38s.  Time for last 1,000,000:   60s.  Last read position: chr14:102,082,158
INFO	2026-06-03 20:42:32	SinglePassSamProgram	Processed   305,000,000 records.  Elapsed time: 00:56:51s.  Time for last 1,000,000:   13s.  Last read position: chr14:104,152,266
INFO	2026-06-03 20:42:50	SinglePassSamProgram	Processed   306,000,000 records.  Elapsed time: 00:57:10s.  Time for last 1,000,000:   18s.  Last read position: chr14:105,460,774
INFO	2026-06-03 20:42:53	SinglePassSamProgram	Processed   307,000,000 records.  Elapsed time: 00:57:13s.  Time for last 1,000,000:    2s.  Last read position: chr14:105,742,190
INFO	2026-06-03 20:43:09	SinglePassSamProgram	Processed   308,000,000 records.  Elapsed time: 00:57:29s.  Time for last 1,000,000:   15s.  Last read position: chr15:31,372,200
INFO	2026-06-03 20:43:15	SinglePassSamProgram	Processed   309,000,000 records.  Elapsed time: 00:57:34s.  Time for last 1,000,000:    5s.  Last read position: chr15:40,353,257
INFO	2026-06-03 20:43:21	SinglePassSamProgram	Processed   310,000,000 records.  Elapsed time: 00:57:41s.  Time for last 1,000,000:    6s.  Last read position: chr15:41,900,660
INFO	2026-06-03 20:43:30	SinglePassSamProgram	Processed   311,000,000 records.  Elapsed time: 00:57:50s.  Time for last 1,000,000:    9s.  Last read position: chr15:44,566,221
INFO	2026-06-03 20:43:42	SinglePassSamProgram	Processed   312,000,000 records.  Elapsed time: 00:58:01s.  Time for last 1,000,000:   11s.  Last read position: chr15:56,443,676
INFO	2026-06-03 20:43:59	SinglePassSamProgram	Processed   313,000,000 records.  Elapsed time: 00:58:19s.  Time for last 1,000,000:   17s.  Last read position: chr15:63,677,927
INFO	2026-06-03 20:44:07	SinglePassSamProgram	Processed   314,000,000 records.  Elapsed time: 00:58:27s.  Time for last 1,000,000:    8s.  Last read position: chr15:70,666,947
INFO	2026-06-03 20:44:19	SinglePassSamProgram	Processed   315,000,000 records.  Elapsed time: 00:58:39s.  Time for last 1,000,000:   12s.  Last read position: chr15:74,923,657
INFO	2026-06-03 20:44:30	SinglePassSamProgram	Processed   316,000,000 records.  Elapsed time: 00:58:49s.  Time for last 1,000,000:   10s.  Last read position: chr15:78,965,700
INFO	2026-06-03 20:44:34	SinglePassSamProgram	Processed   317,000,000 records.  Elapsed time: 00:58:53s.  Time for last 1,000,000:    4s.  Last read position: chr15:85,244,836
INFO	2026-06-03 20:44:45	SinglePassSamProgram	Processed   318,000,000 records.  Elapsed time: 00:59:05s.  Time for last 1,000,000:   11s.  Last read position: chr15:90,910,273
INFO	2026-06-03 20:44:55	SinglePassSamProgram	Processed   319,000,000 records.  Elapsed time: 00:59:15s.  Time for last 1,000,000:   10s.  Last read position: chr16:371,920
INFO	2026-06-03 20:45:08	SinglePassSamProgram	Processed   320,000,000 records.  Elapsed time: 00:59:27s.  Time for last 1,000,000:   12s.  Last read position: chr16:1,446,517
INFO	2026-06-03 20:45:33	SinglePassSamProgram	Processed   321,000,000 records.  Elapsed time: 00:59:53s.  Time for last 1,000,000:   25s.  Last read position: chr16:2,108,480
INFO	2026-06-03 20:45:47	SinglePassSamProgram	Processed   322,000,000 records.  Elapsed time: 01:00:07s.  Time for last 1,000,000:   14s.  Last read position: chr16:2,765,021
INFO	2026-06-03 20:45:59	SinglePassSamProgram	Processed   323,000,000 records.  Elapsed time: 01:00:19s.  Time for last 1,000,000:   11s.  Last read position: chr16:3,727,899
INFO	2026-06-03 20:46:11	SinglePassSamProgram	Processed   324,000,000 records.  Elapsed time: 01:00:31s.  Time for last 1,000,000:   12s.  Last read position: chr16:11,060,963
INFO	2026-06-03 20:46:17	SinglePassSamProgram	Processed   325,000,000 records.  Elapsed time: 01:00:36s.  Time for last 1,000,000:    5s.  Last read position: chr16:15,006,572
INFO	2026-06-03 20:46:29	SinglePassSamProgram	Processed   326,000,000 records.  Elapsed time: 01:00:49s.  Time for last 1,000,000:   12s.  Last read position: chr16:16,350,409
INFO	2026-06-03 20:46:32	SinglePassSamProgram	Processed   327,000,000 records.  Elapsed time: 01:00:52s.  Time for last 1,000,000:    2s.  Last read position: chr16:18,571,278
INFO	2026-06-03 20:46:38	SinglePassSamProgram	Processed   328,000,000 records.  Elapsed time: 01:00:57s.  Time for last 1,000,000:    5s.  Last read position: chr16:21,404,782
INFO	2026-06-03 20:46:41	SinglePassSamProgram	Processed   329,000,000 records.  Elapsed time: 01:01:00s.  Time for last 1,000,000:    3s.  Last read position: chr16:21,836,460
INFO	2026-06-03 20:46:44	SinglePassSamProgram	Processed   330,000,000 records.  Elapsed time: 01:01:04s.  Time for last 1,000,000:    3s.  Last read position: chr16:22,533,777
INFO	2026-06-03 20:46:49	SinglePassSamProgram	Processed   331,000,000 records.  Elapsed time: 01:01:09s.  Time for last 1,000,000:    5s.  Last read position: chr16:23,623,006
INFO	2026-06-03 20:47:02	SinglePassSamProgram	Processed   332,000,000 records.  Elapsed time: 01:01:22s.  Time for last 1,000,000:   12s.  Last read position: chr16:28,496,422
INFO	2026-06-03 20:47:11	SinglePassSamProgram	Processed   333,000,000 records.  Elapsed time: 01:01:30s.  Time for last 1,000,000:    8s.  Last read position: chr16:29,381,828
INFO	2026-06-03 20:47:12	SinglePassSamProgram	Processed   334,000,000 records.  Elapsed time: 01:01:32s.  Time for last 1,000,000:    1s.  Last read position: chr16:29,499,313
INFO	2026-06-03 20:47:18	SinglePassSamProgram	Processed   335,000,000 records.  Elapsed time: 01:01:38s.  Time for last 1,000,000:    6s.  Last read position: chr16:29,991,070
INFO	2026-06-03 20:47:24	SinglePassSamProgram	Processed   336,000,000 records.  Elapsed time: 01:01:43s.  Time for last 1,000,000:    5s.  Last read position: chr16:30,245,459
INFO	2026-06-03 20:47:31	SinglePassSamProgram	Processed   337,000,000 records.  Elapsed time: 01:01:50s.  Time for last 1,000,000:    7s.  Last read position: chr16:30,756,706
INFO	2026-06-03 20:47:37	SinglePassSamProgram	Processed   338,000,000 records.  Elapsed time: 01:01:57s.  Time for last 1,000,000:    6s.  Last read position: chr16:46,691,008
INFO	2026-06-03 20:47:48	SinglePassSamProgram	Processed   339,000,000 records.  Elapsed time: 01:02:07s.  Time for last 1,000,000:   10s.  Last read position: chr16:57,059,497
INFO	2026-06-03 20:48:02	SinglePassSamProgram	Processed   340,000,000 records.  Elapsed time: 01:02:21s.  Time for last 1,000,000:   13s.  Last read position: chr16:67,195,822
INFO	2026-06-03 20:48:12	SinglePassSamProgram	Processed   341,000,000 records.  Elapsed time: 01:02:32s.  Time for last 1,000,000:   10s.  Last read position: chr16:68,829,679
INFO	2026-06-03 20:48:22	SinglePassSamProgram	Processed   342,000,000 records.  Elapsed time: 01:02:41s.  Time for last 1,000,000:    9s.  Last read position: chr16:71,649,984
INFO	2026-06-03 20:48:29	SinglePassSamProgram	Processed   343,000,000 records.  Elapsed time: 01:02:49s.  Time for last 1,000,000:    7s.  Last read position: chr16:79,598,898
INFO	2026-06-03 20:48:37	SinglePassSamProgram	Processed   344,000,000 records.  Elapsed time: 01:02:56s.  Time for last 1,000,000:    7s.  Last read position: chr16:87,602,535
INFO	2026-06-03 20:48:44	SinglePassSamProgram	Processed   345,000,000 records.  Elapsed time: 01:03:04s.  Time for last 1,000,000:    7s.  Last read position: chr16:89,280,867
INFO	2026-06-03 20:49:04	SinglePassSamProgram	Processed   346,000,000 records.  Elapsed time: 01:03:23s.  Time for last 1,000,000:   19s.  Last read position: chr17:1,013,113
INFO	2026-06-03 20:49:16	SinglePassSamProgram	Processed   347,000,000 records.  Elapsed time: 01:03:35s.  Time for last 1,000,000:   12s.  Last read position: chr17:2,387,057
INFO	2026-06-03 20:49:26	SinglePassSamProgram	Processed   348,000,000 records.  Elapsed time: 01:03:46s.  Time for last 1,000,000:   10s.  Last read position: chr17:4,720,463
INFO	2026-06-03 20:49:37	SinglePassSamProgram	Processed   349,000,000 records.  Elapsed time: 01:03:56s.  Time for last 1,000,000:   10s.  Last read position: chr17:7,221,294
INFO	2026-06-03 20:49:47	SinglePassSamProgram	Processed   350,000,000 records.  Elapsed time: 01:04:07s.  Time for last 1,000,000:   10s.  Last read position: chr17:7,513,977
INFO	2026-06-03 20:49:57	SinglePassSamProgram	Processed   351,000,000 records.  Elapsed time: 01:04:17s.  Time for last 1,000,000:   10s.  Last read position: chr17:9,022,326
INFO	2026-06-03 20:50:11	SinglePassSamProgram	Processed   352,000,000 records.  Elapsed time: 01:04:30s.  Time for last 1,000,000:   13s.  Last read position: chr17:17,793,184
INFO	2026-06-03 20:50:24	SinglePassSamProgram	Processed   353,000,000 records.  Elapsed time: 01:04:43s.  Time for last 1,000,000:   13s.  Last read position: chr17:21,198,788
INFO	2026-06-03 20:50:36	SinglePassSamProgram	Processed   354,000,000 records.  Elapsed time: 01:04:55s.  Time for last 1,000,000:   11s.  Last read position: chr17:29,166,299
INFO	2026-06-03 20:50:47	SinglePassSamProgram	Processed   355,000,000 records.  Elapsed time: 01:05:07s.  Time for last 1,000,000:   11s.  Last read position: chr17:35,710,262
INFO	2026-06-03 20:50:54	SinglePassSamProgram	Processed   356,000,000 records.  Elapsed time: 01:05:14s.  Time for last 1,000,000:    6s.  Last read position: chr17:38,463,364
INFO	2026-06-03 20:51:03	SinglePassSamProgram	Processed   357,000,000 records.  Elapsed time: 01:05:23s.  Time for last 1,000,000:    9s.  Last read position: chr17:39,716,537
INFO	2026-06-03 20:51:17	SinglePassSamProgram	Processed   358,000,000 records.  Elapsed time: 01:05:37s.  Time for last 1,000,000:   13s.  Last read position: chr17:40,878,145
INFO	2026-06-03 20:51:28	SinglePassSamProgram	Processed   359,000,000 records.  Elapsed time: 01:05:48s.  Time for last 1,000,000:   11s.  Last read position: chr17:42,793,638
INFO	2026-06-03 20:51:38	SinglePassSamProgram	Processed   360,000,000 records.  Elapsed time: 01:05:57s.  Time for last 1,000,000:    9s.  Last read position: chr17:45,136,697
INFO	2026-06-03 20:51:47	SinglePassSamProgram	Processed   361,000,000 records.  Elapsed time: 01:06:07s.  Time for last 1,000,000:    9s.  Last read position: chr17:47,676,418
INFO	2026-06-03 20:51:55	SinglePassSamProgram	Processed   362,000,000 records.  Elapsed time: 01:06:15s.  Time for last 1,000,000:    8s.  Last read position: chr17:50,185,419
INFO	2026-06-03 20:52:01	SinglePassSamProgram	Processed   363,000,000 records.  Elapsed time: 01:06:20s.  Time for last 1,000,000:    5s.  Last read position: chr17:50,190,547
INFO	2026-06-03 20:52:11	SinglePassSamProgram	Processed   364,000,000 records.  Elapsed time: 01:06:30s.  Time for last 1,000,000:   10s.  Last read position: chr17:50,196,616
INFO	2026-06-03 20:52:23	SinglePassSamProgram	Processed   365,000,000 records.  Elapsed time: 01:06:43s.  Time for last 1,000,000:   12s.  Last read position: chr17:50,863,485
INFO	2026-06-03 20:52:32	SinglePassSamProgram	Processed   366,000,000 records.  Elapsed time: 01:06:52s.  Time for last 1,000,000:    8s.  Last read position: chr17:59,663,842
INFO	2026-06-03 20:52:44	SinglePassSamProgram	Processed   367,000,000 records.  Elapsed time: 01:07:03s.  Time for last 1,000,000:   11s.  Last read position: chr17:64,499,948
INFO	2026-06-03 20:52:56	SinglePassSamProgram	Processed   368,000,000 records.  Elapsed time: 01:07:16s.  Time for last 1,000,000:   12s.  Last read position: chr17:68,877,558
INFO	2026-06-03 20:53:07	SinglePassSamProgram	Processed   369,000,000 records.  Elapsed time: 01:07:27s.  Time for last 1,000,000:   11s.  Last read position: chr17:75,573,136
INFO	2026-06-03 20:53:42	SinglePassSamProgram	Processed   370,000,000 records.  Elapsed time: 01:08:02s.  Time for last 1,000,000:   34s.  Last read position: chr17:75,847,665
INFO	2026-06-03 20:53:52	SinglePassSamProgram	Processed   371,000,000 records.  Elapsed time: 01:08:11s.  Time for last 1,000,000:    9s.  Last read position: chr17:78,120,679
INFO	2026-06-03 20:54:03	SinglePassSamProgram	Processed   372,000,000 records.  Elapsed time: 01:08:23s.  Time for last 1,000,000:   11s.  Last read position: chr17:80,363,258
INFO	2026-06-03 20:54:24	SinglePassSamProgram	Processed   373,000,000 records.  Elapsed time: 01:08:44s.  Time for last 1,000,000:   21s.  Last read position: chr17:81,868,776
INFO	2026-06-03 20:54:36	SinglePassSamProgram	Processed   374,000,000 records.  Elapsed time: 01:08:55s.  Time for last 1,000,000:   11s.  Last read position: chr18:657,745
INFO	2026-06-03 20:54:44	SinglePassSamProgram	Processed   375,000,000 records.  Elapsed time: 01:09:04s.  Time for last 1,000,000:    8s.  Last read position: chr18:23,545,027
INFO	2026-06-03 20:54:54	SinglePassSamProgram	Processed   376,000,000 records.  Elapsed time: 01:09:14s.  Time for last 1,000,000:    9s.  Last read position: chr18:50,040,282
INFO	2026-06-03 20:55:13	SinglePassSamProgram	Processed   377,000,000 records.  Elapsed time: 01:09:33s.  Time for last 1,000,000:   19s.  Last read position: chr18:74,633,427
INFO	2026-06-03 20:55:20	SinglePassSamProgram	Processed   378,000,000 records.  Elapsed time: 01:09:40s.  Time for last 1,000,000:    7s.  Last read position: chr19:901,452
INFO	2026-06-03 20:55:31	SinglePassSamProgram	Processed   379,000,000 records.  Elapsed time: 01:09:50s.  Time for last 1,000,000:   10s.  Last read position: chr19:1,300,368
INFO	2026-06-03 20:55:38	SinglePassSamProgram	Processed   380,000,000 records.  Elapsed time: 01:09:58s.  Time for last 1,000,000:    7s.  Last read position: chr19:2,129,105
INFO	2026-06-03 20:55:45	SinglePassSamProgram	Processed   381,000,000 records.  Elapsed time: 01:10:05s.  Time for last 1,000,000:    7s.  Last read position: chr19:3,708,492
INFO	2026-06-03 20:55:52	SinglePassSamProgram	Processed   382,000,000 records.  Elapsed time: 01:10:11s.  Time for last 1,000,000:    6s.  Last read position: chr19:5,090,613
INFO	2026-06-03 20:55:58	SinglePassSamProgram	Processed   383,000,000 records.  Elapsed time: 01:10:18s.  Time for last 1,000,000:    6s.  Last read position: chr19:6,420,422
INFO	2026-06-03 20:56:07	SinglePassSamProgram	Processed   384,000,000 records.  Elapsed time: 01:10:27s.  Time for last 1,000,000:    9s.  Last read position: chr19:8,335,509
INFO	2026-06-03 20:56:21	SinglePassSamProgram	Processed   385,000,000 records.  Elapsed time: 01:10:41s.  Time for last 1,000,000:   13s.  Last read position: chr19:10,637,680
INFO	2026-06-03 20:56:51	SinglePassSamProgram	Processed   386,000,000 records.  Elapsed time: 01:11:11s.  Time for last 1,000,000:   30s.  Last read position: chr19:11,436,065
INFO	2026-06-03 20:57:00	SinglePassSamProgram	Processed   387,000,000 records.  Elapsed time: 01:11:19s.  Time for last 1,000,000:    8s.  Last read position: chr19:13,153,392
INFO	2026-06-03 20:57:08	SinglePassSamProgram	Processed   388,000,000 records.  Elapsed time: 01:11:28s.  Time for last 1,000,000:    8s.  Last read position: chr19:15,110,630
INFO	2026-06-03 20:57:17	SinglePassSamProgram	Processed   389,000,000 records.  Elapsed time: 01:11:37s.  Time for last 1,000,000:    8s.  Last read position: chr19:15,424,364
INFO	2026-06-03 20:57:28	SinglePassSamProgram	Processed   390,000,000 records.  Elapsed time: 01:11:48s.  Time for last 1,000,000:   10s.  Last read position: chr19:17,511,809
INFO	2026-06-03 20:57:34	SinglePassSamProgram	Processed   391,000,000 records.  Elapsed time: 01:11:53s.  Time for last 1,000,000:    5s.  Last read position: chr19:18,541,774
INFO	2026-06-03 20:57:40	SinglePassSamProgram	Processed   392,000,000 records.  Elapsed time: 01:12:00s.  Time for last 1,000,000:    6s.  Last read position: chr19:32,598,178
INFO	2026-06-03 20:57:49	SinglePassSamProgram	Processed   393,000,000 records.  Elapsed time: 01:12:08s.  Time for last 1,000,000:    8s.  Last read position: chr19:35,721,048
INFO	2026-06-03 20:57:58	SinglePassSamProgram	Processed   394,000,000 records.  Elapsed time: 01:12:17s.  Time for last 1,000,000:    9s.  Last read position: chr19:38,641,570
INFO	2026-06-03 20:58:04	SinglePassSamProgram	Processed   395,000,000 records.  Elapsed time: 01:12:24s.  Time for last 1,000,000:    6s.  Last read position: chr19:39,408,584
INFO	2026-06-03 20:58:10	SinglePassSamProgram	Processed   396,000,000 records.  Elapsed time: 01:12:30s.  Time for last 1,000,000:    5s.  Last read position: chr19:39,875,887
INFO	2026-06-03 20:58:12	SinglePassSamProgram	Processed   397,000,000 records.  Elapsed time: 01:12:32s.  Time for last 1,000,000:    2s.  Last read position: chr19:39,886,501
INFO	2026-06-03 20:58:15	SinglePassSamProgram	Processed   398,000,000 records.  Elapsed time: 01:12:35s.  Time for last 1,000,000:    3s.  Last read position: chr19:39,893,440
INFO	2026-06-03 20:58:20	SinglePassSamProgram	Processed   399,000,000 records.  Elapsed time: 01:12:39s.  Time for last 1,000,000:    4s.  Last read position: chr19:39,913,978
INFO	2026-06-03 20:58:26	SinglePassSamProgram	Processed   400,000,000 records.  Elapsed time: 01:12:46s.  Time for last 1,000,000:    6s.  Last read position: chr19:40,242,663
INFO	2026-06-03 20:58:41	SinglePassSamProgram	Processed   401,000,000 records.  Elapsed time: 01:13:01s.  Time for last 1,000,000:   15s.  Last read position: chr19:41,687,142
INFO	2026-06-03 20:58:49	SinglePassSamProgram	Processed   402,000,000 records.  Elapsed time: 01:13:09s.  Time for last 1,000,000:    7s.  Last read position: chr19:42,090,198
INFO	2026-06-03 20:58:58	SinglePassSamProgram	Processed   403,000,000 records.  Elapsed time: 01:13:17s.  Time for last 1,000,000:    8s.  Last read position: chr19:42,527,350
INFO	2026-06-03 20:59:03	SinglePassSamProgram	Processed   404,000,000 records.  Elapsed time: 01:13:23s.  Time for last 1,000,000:    5s.  Last read position: chr19:45,178,146
INFO	2026-06-03 20:59:11	SinglePassSamProgram	Processed   405,000,000 records.  Elapsed time: 01:13:31s.  Time for last 1,000,000:    8s.  Last read position: chr19:46,720,599
INFO	2026-06-03 20:59:18	SinglePassSamProgram	Processed   406,000,000 records.  Elapsed time: 01:13:38s.  Time for last 1,000,000:    6s.  Last read position: chr19:48,603,610
INFO	2026-06-03 20:59:26	SinglePassSamProgram	Processed   407,000,000 records.  Elapsed time: 01:13:45s.  Time for last 1,000,000:    7s.  Last read position: chr19:49,200,771
INFO	2026-06-03 20:59:33	SinglePassSamProgram	Processed   408,000,000 records.  Elapsed time: 01:13:52s.  Time for last 1,000,000:    7s.  Last read position: chr19:49,801,023
INFO	2026-06-03 20:59:56	SinglePassSamProgram	Processed   409,000,000 records.  Elapsed time: 01:14:15s.  Time for last 1,000,000:   22s.  Last read position: chr19:50,480,639
INFO	2026-06-03 21:00:02	SinglePassSamProgram	Processed   410,000,000 records.  Elapsed time: 01:14:22s.  Time for last 1,000,000:    6s.  Last read position: chr19:54,454,545
INFO	2026-06-03 21:00:09	SinglePassSamProgram	Processed   411,000,000 records.  Elapsed time: 01:14:29s.  Time for last 1,000,000:    6s.  Last read position: chr19:55,455,883
INFO	2026-06-03 21:00:13	SinglePassSamProgram	Processed   412,000,000 records.  Elapsed time: 01:14:33s.  Time for last 1,000,000:    3s.  Last read position: chr19:58,085,087
INFO	2026-06-03 21:00:21	SinglePassSamProgram	Processed   413,000,000 records.  Elapsed time: 01:14:40s.  Time for last 1,000,000:    7s.  Last read position: chr20:3,164,672
INFO	2026-06-03 21:00:29	SinglePassSamProgram	Processed   414,000,000 records.  Elapsed time: 01:14:49s.  Time for last 1,000,000:    8s.  Last read position: chr20:17,614,736
INFO	2026-06-03 21:00:42	SinglePassSamProgram	Processed   415,000,000 records.  Elapsed time: 01:15:01s.  Time for last 1,000,000:   12s.  Last read position: chr20:23,637,682
INFO	2026-06-03 21:00:49	SinglePassSamProgram	Processed   416,000,000 records.  Elapsed time: 01:15:09s.  Time for last 1,000,000:    7s.  Last read position: chr20:34,393,816
INFO	2026-06-03 21:01:03	SinglePassSamProgram	Processed   417,000,000 records.  Elapsed time: 01:15:23s.  Time for last 1,000,000:   13s.  Last read position: chr20:36,793,420
INFO	2026-06-03 21:01:11	SinglePassSamProgram	Processed   418,000,000 records.  Elapsed time: 01:15:31s.  Time for last 1,000,000:    8s.  Last read position: chr20:44,715,230
INFO	2026-06-03 21:01:26	SinglePassSamProgram	Processed   419,000,000 records.  Elapsed time: 01:15:46s.  Time for last 1,000,000:   15s.  Last read position: chr20:49,905,965
INFO	2026-06-03 21:01:31	SinglePassSamProgram	Processed   420,000,000 records.  Elapsed time: 01:15:51s.  Time for last 1,000,000:    4s.  Last read position: chr20:58,713,993
INFO	2026-06-03 21:01:45	SinglePassSamProgram	Processed   421,000,000 records.  Elapsed time: 01:16:05s.  Time for last 1,000,000:   13s.  Last read position: chr20:62,861,680
INFO	2026-06-03 21:01:52	SinglePassSamProgram	Processed   422,000,000 records.  Elapsed time: 01:16:12s.  Time for last 1,000,000:    7s.  Last read position: chr21:5,033,727
INFO	2026-06-03 21:01:53	SinglePassSamProgram	Processed   423,000,000 records.  Elapsed time: 01:16:13s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,216,841
INFO	2026-06-03 21:01:54	SinglePassSamProgram	Processed   424,000,000 records.  Elapsed time: 01:16:14s.  Time for last 1,000,000:    0s.  Last read position: chr21:8,258,912
INFO	2026-06-03 21:01:55	SinglePassSamProgram	Processed   425,000,000 records.  Elapsed time: 01:16:15s.  Time for last 1,000,000:    0s.  Last read position: chr21:8,258,961
INFO	2026-06-03 21:01:56	SinglePassSamProgram	Processed   426,000,000 records.  Elapsed time: 01:16:15s.  Time for last 1,000,000:    0s.  Last read position: chr21:8,399,124
INFO	2026-06-03 21:01:57	SinglePassSamProgram	Processed   427,000,000 records.  Elapsed time: 01:16:17s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,441,913
INFO	2026-06-03 21:01:58	SinglePassSamProgram	Processed   428,000,000 records.  Elapsed time: 01:16:18s.  Time for last 1,000,000:    0s.  Last read position: chr21:8,441,987
INFO	2026-06-03 21:01:59	SinglePassSamProgram	Processed   429,000,000 records.  Elapsed time: 01:16:18s.  Time for last 1,000,000:    0s.  Last read position: chr21:8,444,562
INFO	2026-06-03 21:02:06	SinglePassSamProgram	Processed   430,000,000 records.  Elapsed time: 01:16:25s.  Time for last 1,000,000:    7s.  Last read position: chr21:33,549,921
INFO	2026-06-03 21:02:21	SinglePassSamProgram	Processed   431,000,000 records.  Elapsed time: 01:16:40s.  Time for last 1,000,000:   15s.  Last read position: chr21:39,661,297
INFO	2026-06-03 21:02:42	SinglePassSamProgram	Processed   432,000,000 records.  Elapsed time: 01:17:01s.  Time for last 1,000,000:   20s.  Last read position: chr21:44,227,465
INFO	2026-06-03 21:02:53	SinglePassSamProgram	Processed   433,000,000 records.  Elapsed time: 01:17:13s.  Time for last 1,000,000:   11s.  Last read position: chr21:46,115,880
INFO	2026-06-03 21:03:05	SinglePassSamProgram	Processed   434,000,000 records.  Elapsed time: 01:17:25s.  Time for last 1,000,000:   12s.  Last read position: chr22:19,064,946
INFO	2026-06-03 21:03:17	SinglePassSamProgram	Processed   435,000,000 records.  Elapsed time: 01:17:37s.  Time for last 1,000,000:   12s.  Last read position: chr22:22,906,510
INFO	2026-06-03 21:03:26	SinglePassSamProgram	Processed   436,000,000 records.  Elapsed time: 01:17:45s.  Time for last 1,000,000:    8s.  Last read position: chr22:25,028,322
INFO	2026-06-03 21:03:38	SinglePassSamProgram	Processed   437,000,000 records.  Elapsed time: 01:17:57s.  Time for last 1,000,000:   12s.  Last read position: chr22:29,299,687
INFO	2026-06-03 21:03:50	SinglePassSamProgram	Processed   438,000,000 records.  Elapsed time: 01:18:09s.  Time for last 1,000,000:   12s.  Last read position: chr22:31,754,128
INFO	2026-06-03 21:04:01	SinglePassSamProgram	Processed   439,000,000 records.  Elapsed time: 01:18:21s.  Time for last 1,000,000:   11s.  Last read position: chr22:36,326,567
INFO	2026-06-03 21:04:09	SinglePassSamProgram	Processed   440,000,000 records.  Elapsed time: 01:18:28s.  Time for last 1,000,000:    7s.  Last read position: chr22:37,944,191
INFO	2026-06-03 21:04:15	SinglePassSamProgram	Processed   441,000,000 records.  Elapsed time: 01:18:35s.  Time for last 1,000,000:    6s.  Last read position: chr22:40,265,649
INFO	2026-06-03 21:04:25	SinglePassSamProgram	Processed   442,000,000 records.  Elapsed time: 01:18:45s.  Time for last 1,000,000:   10s.  Last read position: chr22:42,214,871
INFO	2026-06-03 21:04:32	SinglePassSamProgram	Processed   443,000,000 records.  Elapsed time: 01:18:52s.  Time for last 1,000,000:    6s.  Last read position: chr22:50,220,226
INFO	2026-06-03 21:04:45	SinglePassSamProgram	Processed   444,000,000 records.  Elapsed time: 01:19:05s.  Time for last 1,000,000:   12s.  Last read position: chr22:50,720,897
INFO	2026-06-03 21:04:50	SinglePassSamProgram	Processed   445,000,000 records.  Elapsed time: 01:19:10s.  Time for last 1,000,000:    5s.  Last read position: chrX:17,732,241
INFO	2026-06-03 21:05:10	SinglePassSamProgram	Processed   446,000,000 records.  Elapsed time: 01:19:30s.  Time for last 1,000,000:   19s.  Last read position: chrX:43,728,292
INFO	2026-06-03 21:05:21	SinglePassSamProgram	Processed   447,000,000 records.  Elapsed time: 01:19:41s.  Time for last 1,000,000:   11s.  Last read position: chrX:50,085,995
INFO	2026-06-03 21:05:35	SinglePassSamProgram	Processed   448,000,000 records.  Elapsed time: 01:19:55s.  Time for last 1,000,000:   13s.  Last read position: chrX:65,737,317
INFO	2026-06-03 21:05:49	SinglePassSamProgram	Processed   449,000,000 records.  Elapsed time: 01:20:08s.  Time for last 1,000,000:   13s.  Last read position: chrX:77,684,152
INFO	2026-06-03 21:05:56	SinglePassSamProgram	Processed   450,000,000 records.  Elapsed time: 01:20:16s.  Time for last 1,000,000:    7s.  Last read position: chrX:120,163,717
INFO	2026-06-03 21:06:04	SinglePassSamProgram	Processed   451,000,000 records.  Elapsed time: 01:20:24s.  Time for last 1,000,000:    8s.  Last read position: chrX:153,693,309
INFO	2026-06-03 21:06:26	SinglePassSamProgram	Processed   452,000,000 records.  Elapsed time: 01:20:45s.  Time for last 1,000,000:   21s.  Last read position: chrX:154,441,132
INFO	2026-06-03 21:06:29	SinglePassSamProgram	Processed   453,000,000 records.  Elapsed time: 01:20:48s.  Time for last 1,000,000:    2s.  Last read position: GL000220.1:114,135
INFO	2026-06-03 21:06:29	SinglePassSamProgram	Processed   454,000,000 records.  Elapsed time: 01:20:49s.  Time for last 1,000,000:    0s.  Last read position: GL000220.1:114,193
INFO	2026-06-03 21:06:30	SinglePassSamProgram	Processed   455,000,000 records.  Elapsed time: 01:20:49s.  Time for last 1,000,000:    0s.  Last read position: GL000220.1:116,771
INFO	2026-06-03 21:06:30	SinglePassSamProgram	Processed   456,000,000 records.  Elapsed time: 01:20:50s.  Time for last 1,000,000:    0s.  Last read position: GL000220.1:158,134
INFO	2026-06-03 21:06:31	SinglePassSamProgram	Processed   457,000,000 records.  Elapsed time: 01:20:51s.  Time for last 1,000,000:    0s.  Last read position: GL000220.1:159,553
INFO	2026-06-03 21:06:32	SinglePassSamProgram	Processed   458,000,000 records.  Elapsed time: 01:20:51s.  Time for last 1,000,000:    0s.  Last read position: KI270733.1:130,774
INFO	2026-06-03 21:06:33	SinglePassSamProgram	Processed   459,000,000 records.  Elapsed time: 01:20:52s.  Time for last 1,000,000:    0s.  Last read position: KI270733.1:131,040
INFO	2026-06-03 21:06:33	SinglePassSamProgram	Processed   460,000,000 records.  Elapsed time: 01:20:53s.  Time for last 1,000,000:    0s.  Last read position: KI270733.1:133,640
INFO	2026-06-03 21:06:34	SinglePassSamProgram	Processed   461,000,000 records.  Elapsed time: 01:20:54s.  Time for last 1,000,000:    0s.  Last read position: KI270733.1:176,094
INFO	2026-06-03 21:06:35	SinglePassSamProgram	Processed   462,000,000 records.  Elapsed time: 01:20:54s.  Time for last 1,000,000:    0s.  Last read position: KI270733.1:178,243
INFO	2026-06-03 21:06:35	SinglePassSamProgram	Processed   463,000,000 records.  Elapsed time: 01:20:55s.  Time for last 1,000,000:    0s.  Last read position: */*
INFO	2026-06-03 21:06:36	SinglePassSamProgram	Processed   464,000,000 records.  Elapsed time: 01:20:56s.  Time for last 1,000,000:    0s.  Last read position: */*
INFO	2026-06-03 21:06:37	SinglePassSamProgram	Processed   465,000,000 records.  Elapsed time: 01:20:56s.  Time for last 1,000,000:    0s.  Last read position: */*
[Wed Jun 03 21:06:39 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 81.04 minutes.
Runtime.totalMemory()=3400007680