Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/682e371175457d4a901ea58b836e9c/aih-tih-sc-318819-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ctat_ref_annot.interval_list
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/b292659eb6c02ea92fdd26da8c6218/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/0e830bcbe878e515254df17d01003a/aih-tih-sc-318819-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/b292659eb6c02ea92fdd26da8c6218/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ref_annot.gtf.refflat
==> STAGING COMPLETE (6 inputs)
/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
Jun 03, 2026 7:57:44 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Wed Jun 03 19:57:44 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT aih-tih-sc-318819-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-318819-R1_A23YTGFLT4_1_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Wed Jun 03 19:57:44 GMT 2026] Executing as ?@nf-2bb292659eb6c02ea92fdd26da8c6218-648b4-ffmlc on Linux 6.12.83 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
WARNING: BAM index file /tmp/nxf.XXXXBU0yWu/aih-tih-sc-318819-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXXBU0yWu/aih-tih-sc-318819-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
INFO 2026-06-03 19:57:47 CollectRnaSeqMetrics Loaded 58279 genes.
INFO 2026-06-03 19:58:04 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 17s. Last read position: chr1:1,355,615
INFO 2026-06-03 19:58:19 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 14s. Last read position: chr1:2,499,198
INFO 2026-06-03 19:58:35 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 15s. Last read position: chr1:6,785,513
INFO 2026-06-03 19:58:48 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 13s. Last read position: chr1:10,463,099
INFO 2026-06-03 19:59:07 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 18s. Last read position: chr1:13,780,555
INFO 2026-06-03 19:59:14 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 7s. Last read position: chr1:16,956,073
INFO 2026-06-03 19:59:29 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 15s. Last read position: chr1:19,385,507
INFO 2026-06-03 19:59:47 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 17s. Last read position: chr1:21,617,425
INFO 2026-06-03 20:00:06 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 18s. Last read position: chr1:21,890,628
INFO 2026-06-03 20:00:11 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 5s. Last read position: chr1:23,695,838
INFO 2026-06-03 20:00:18 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 7s. Last read position: chr1:26,472,582
INFO 2026-06-03 20:00:25 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 7s. Last read position: chr1:27,801,719
INFO 2026-06-03 20:00:36 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 10s. Last read position: chr1:31,586,885
INFO 2026-06-03 20:00:56 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 19s. Last read position: chr1:32,797,810
INFO 2026-06-03 20:01:08 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 12s. Last read position: chr1:36,178,012
INFO 2026-06-03 20:01:36 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 27s. Last read position: chr1:39,340,638
INFO 2026-06-03 20:02:34 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 58s. Last read position: chr1:42,682,696
INFO 2026-06-03 20:02:47 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 12s. Last read position: chr1:44,008,408
INFO 2026-06-03 20:02:56 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 8s. Last read position: chr1:46,197,755
INFO 2026-06-03 20:03:08 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 12s. Last read position: chr1:54,032,191
INFO 2026-06-03 20:03:21 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 13s. Last read position: chr1:64,470,928
INFO 2026-06-03 20:03:40 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 19s. Last read position: chr1:85,582,526
INFO 2026-06-03 20:03:50 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 9s. Last read position: chr1:94,828,502
INFO 2026-06-03 20:04:05 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 15s. Last read position: chr1:109,630,334
INFO 2026-06-03 20:04:19 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 13s. Last read position: chr1:113,642,422
INFO 2026-06-03 20:04:36 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 17s. Last read position: chr1:117,076,280
INFO 2026-06-03 20:04:46 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 9s. Last read position: chr1:120,805,719
INFO 2026-06-03 20:04:54 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 8s. Last read position: chr1:146,156,786
INFO 2026-06-03 20:05:10 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 15s. Last read position: chr1:149,071,667
INFO 2026-06-03 20:05:13 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 2s. Last read position: chr1:149,929,151
INFO 2026-06-03 20:05:24 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 11s. Last read position: chr1:150,999,869
INFO 2026-06-03 20:05:30 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 5s. Last read position: chr1:153,740,696
INFO 2026-06-03 20:05:42 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 11s. Last read position: chr1:154,207,638
INFO 2026-06-03 20:06:03 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 20s. Last read position: chr1:155,172,774
INFO 2026-06-03 20:06:22 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 19s. Last read position: chr1:155,826,904
INFO 2026-06-03 20:06:39 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 16s. Last read position: chr1:156,293,414
INFO 2026-06-03 20:06:45 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 6s. Last read position: chr1:160,292,038
INFO 2026-06-03 20:06:56 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 11s. Last read position: chr1:161,607,261
INFO 2026-06-03 20:07:01 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 4s. Last read position: chr1:169,127,259
INFO 2026-06-03 20:07:09 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 8s. Last read position: chr1:174,305,030
INFO 2026-06-03 20:07:15 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 5s. Last read position: chr1:182,884,654
INFO 2026-06-03 20:07:21 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 6s. Last read position: chr1:186,351,355
INFO 2026-06-03 20:07:29 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 7s. Last read position: chr1:201,712,908
INFO 2026-06-03 20:07:38 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 8s. Last read position: chr1:204,124,804
INFO 2026-06-03 20:07:43 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 5s. Last read position: chr1:206,934,451
INFO 2026-06-03 20:07:50 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 7s. Last read position: chr1:209,625,857
INFO 2026-06-03 20:07:58 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 8s. Last read position: chr1:222,633,178
INFO 2026-06-03 20:08:09 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 10s. Last read position: chr1:226,186,600
INFO 2026-06-03 20:08:22 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 13s. Last read position: chr1:232,514,572
INFO 2026-06-03 20:08:34 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 11s. Last read position: chr1:244,054,690
INFO 2026-06-03 20:08:45 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 11s. Last read position: chr2:3,388,573
INFO 2026-06-03 20:08:55 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 9s. Last read position: chr2:15,595,509
INFO 2026-06-03 20:09:06 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 11s. Last read position: chr2:26,135,029
INFO 2026-06-03 20:09:14 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 7s. Last read position: chr2:28,591,710
INFO 2026-06-03 20:09:21 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 7s. Last read position: chr2:32,916,262
INFO 2026-06-03 20:09:26 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 5s. Last read position: chr2:32,916,406
INFO 2026-06-03 20:09:29 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 3s. Last read position: chr2:36,966,269
INFO 2026-06-03 20:09:37 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 7s. Last read position: chr2:43,572,809
INFO 2026-06-03 20:09:46 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 8s. Last read position: chr2:53,919,147
INFO 2026-06-03 20:10:00 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 14s. Last read position: chr2:61,071,697
INFO 2026-06-03 20:10:16 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 15s. Last read position: chr2:69,329,375
INFO 2026-06-03 20:10:37 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 21s. Last read position: chr2:73,448,245
INFO 2026-06-03 20:10:47 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 9s. Last read position: chr2:75,654,746
INFO 2026-06-03 20:10:50 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 3s. Last read position: chr2:79,122,107
INFO 2026-06-03 20:10:55 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 5s. Last read position: chr2:86,146,106
INFO 2026-06-03 20:11:00 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 5s. Last read position: chr2:95,917,877
INFO 2026-06-03 20:11:10 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 10s. Last read position: chr2:99,322,092
INFO 2026-06-03 20:11:18 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 7s. Last read position: chr2:106,441,293
INFO 2026-06-03 20:11:22 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 3s. Last read position: chr2:108,763,986
INFO 2026-06-03 20:11:26 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 4s. Last read position: chr2:108,781,325
INFO 2026-06-03 20:11:30 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 3s. Last read position: chr2:110,535,382
INFO 2026-06-03 20:11:35 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 5s. Last read position: chr2:113,132,919
INFO 2026-06-03 20:11:43 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 8s. Last read position: chr2:127,625,385
INFO 2026-06-03 20:11:53 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 9s. Last read position: chr2:136,199,073
INFO 2026-06-03 20:12:07 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 14s. Last read position: chr2:159,748,419
INFO 2026-06-03 20:12:17 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 10s. Last read position: chr2:173,363,238
INFO 2026-06-03 20:12:38 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 20s. Last read position: chr2:181,915,648
INFO 2026-06-03 20:12:47 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 9s. Last read position: chr2:188,997,723
INFO 2026-06-03 20:12:58 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 11s. Last read position: chr2:189,085,171
INFO 2026-06-03 20:13:12 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 13s. Last read position: chr2:197,501,102
INFO 2026-06-03 20:13:28 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 16s. Last read position: chr2:206,056,838
INFO 2026-06-03 20:13:38 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 10s. Last read position: chr2:215,367,924
INFO 2026-06-03 20:14:04 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 25s. Last read position: chr2:215,376,498
INFO 2026-06-03 20:14:35 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 31s. Last read position: chr2:215,388,242
INFO 2026-06-03 20:15:17 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 42s. Last read position: chr2:215,408,160
INFO 2026-06-03 20:16:12 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 54s. Last read position: chr2:215,428,184
INFO 2026-06-03 20:16:55 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 42s. Last read position: chr2:217,892,951
INFO 2026-06-03 20:17:05 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 10s. Last read position: chr2:219,250,896
INFO 2026-06-03 20:17:18 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 12s. Last read position: chr2:230,328,776
INFO 2026-06-03 20:17:32 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 14s. Last read position: chr2:233,251,835
INFO 2026-06-03 20:17:48 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 15s. Last read position: chr2:237,371,997
INFO 2026-06-03 20:18:05 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 17s. Last read position: chr2:240,617,206
INFO 2026-06-03 20:18:21 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 16s. Last read position: chr3:5,199,666
INFO 2026-06-03 20:18:35 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 13s. Last read position: chr3:12,599,717
INFO 2026-06-03 20:18:43 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 8s. Last read position: chr3:22,382,015
INFO 2026-06-03 20:18:53 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 9s. Last read position: chr3:37,326,666
INFO 2026-06-03 20:19:09 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 15s. Last read position: chr3:42,087,250
INFO 2026-06-03 20:19:17 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 8s. Last read position: chr3:47,000,187
INFO 2026-06-03 20:19:28 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 10s. Last read position: chr3:48,419,757
INFO 2026-06-03 20:19:50 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 22s. Last read position: chr3:48,592,618
INFO 2026-06-03 20:20:05 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 14s. Last read position: chr3:49,123,766
INFO 2026-06-03 20:20:15 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:22:27s. Time for last 1,000,000: 9s. Last read position: chr3:50,108,128
INFO 2026-06-03 20:20:21 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:22:34s. Time for last 1,000,000: 6s. Last read position: chr3:52,332,269
INFO 2026-06-03 20:20:32 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:22:44s. Time for last 1,000,000: 10s. Last read position: chr3:53,231,463
INFO 2026-06-03 20:20:48 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:23:00s. Time for last 1,000,000: 15s. Last read position: chr3:58,534,079
INFO 2026-06-03 20:21:01 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:23:13s. Time for last 1,000,000: 12s. Last read position: chr3:88,139,377
INFO 2026-06-03 20:21:10 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:23:23s. Time for last 1,000,000: 9s. Last read position: chr3:112,119,478
INFO 2026-06-03 20:21:17 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:23:29s. Time for last 1,000,000: 6s. Last read position: chr3:122,570,545
INFO 2026-06-03 20:21:24 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:23:36s. Time for last 1,000,000: 6s. Last read position: chr3:126,991,419
INFO 2026-06-03 20:21:31 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:23:43s. Time for last 1,000,000: 7s. Last read position: chr3:129,559,719
INFO 2026-06-03 20:21:40 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:23:53s. Time for last 1,000,000: 9s. Last read position: chr3:138,759,184
INFO 2026-06-03 20:21:50 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:24:02s. Time for last 1,000,000: 9s. Last read position: chr3:153,171,058
INFO 2026-06-03 20:21:58 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:24:10s. Time for last 1,000,000: 8s. Last read position: chr3:172,295,411
INFO 2026-06-03 20:22:09 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:24:21s. Time for last 1,000,000: 10s. Last read position: chr3:184,316,129
INFO 2026-06-03 20:22:27 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:24:39s. Time for last 1,000,000: 18s. Last read position: chr3:187,728,478
INFO 2026-06-03 20:22:36 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:24:48s. Time for last 1,000,000: 8s. Last read position: chr3:194,642,060
INFO 2026-06-03 20:22:45 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:24:57s. Time for last 1,000,000: 8s. Last read position: chr3:195,780,177
INFO 2026-06-03 20:23:04 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:25:16s. Time for last 1,000,000: 19s. Last read position: chr3:195,785,055
INFO 2026-06-03 20:23:23 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:25:36s. Time for last 1,000,000: 19s. Last read position: chr3:196,937,559
INFO 2026-06-03 20:23:37 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:25:50s. Time for last 1,000,000: 13s. Last read position: chr4:1,212,237
INFO 2026-06-03 20:23:47 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:26:00s. Time for last 1,000,000: 10s. Last read position: chr4:2,827,271
INFO 2026-06-03 20:23:59 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:26:11s. Time for last 1,000,000: 11s. Last read position: chr4:7,809,763
INFO 2026-06-03 20:24:08 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:26:20s. Time for last 1,000,000: 9s. Last read position: chr4:24,537,154
INFO 2026-06-03 20:24:15 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:26:27s. Time for last 1,000,000: 7s. Last read position: chr4:41,013,767
INFO 2026-06-03 20:24:25 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:26:37s. Time for last 1,000,000: 10s. Last read position: chr4:56,342,842
INFO 2026-06-03 20:24:31 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:26:44s. Time for last 1,000,000: 6s. Last read position: chr4:73,741,950
INFO 2026-06-03 20:24:38 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:26:50s. Time for last 1,000,000: 6s. Last read position: chr4:77,164,311
INFO 2026-06-03 20:24:51 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:27:03s. Time for last 1,000,000: 12s. Last read position: chr4:87,494,158
INFO 2026-06-03 20:24:59 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:27:11s. Time for last 1,000,000: 8s. Last read position: chr4:105,424,294
INFO 2026-06-03 20:25:09 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:27:22s. Time for last 1,000,000: 10s. Last read position: chr4:122,279,965
INFO 2026-06-03 20:25:17 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:27:29s. Time for last 1,000,000: 7s. Last read position: chr4:145,892,323
INFO 2026-06-03 20:25:36 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:27:49s. Time for last 1,000,000: 19s. Last read position: chr4:158,869,127
INFO 2026-06-03 20:25:45 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:27:57s. Time for last 1,000,000: 8s. Last read position: chr4:185,332,616
INFO 2026-06-03 20:25:53 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:28:05s. Time for last 1,000,000: 8s. Last read position: chr5:1,341,773
INFO 2026-06-03 20:26:03 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:28:16s. Time for last 1,000,000: 10s. Last read position: chr5:14,397,088
INFO 2026-06-03 20:26:20 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:28:32s. Time for last 1,000,000: 16s. Last read position: chr5:33,467,584
INFO 2026-06-03 20:26:29 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:28:42s. Time for last 1,000,000: 9s. Last read position: chr5:44,811,018
INFO 2026-06-03 20:26:39 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:28:52s. Time for last 1,000,000: 10s. Last read position: chr5:68,296,193
INFO 2026-06-03 20:26:46 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:28:58s. Time for last 1,000,000: 6s. Last read position: chr5:74,720,706
INFO 2026-06-03 20:26:55 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:29:07s. Time for last 1,000,000: 9s. Last read position: chr5:85,549,657
INFO 2026-06-03 20:27:17 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:29:29s. Time for last 1,000,000: 22s. Last read position: chr5:103,168,178
INFO 2026-06-03 20:27:26 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:29:38s. Time for last 1,000,000: 9s. Last read position: chr5:127,539,074
INFO 2026-06-03 20:27:34 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:29:47s. Time for last 1,000,000: 8s. Last read position: chr5:134,666,854
INFO 2026-06-03 20:27:41 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:29:54s. Time for last 1,000,000: 6s. Last read position: chr5:138,473,793
INFO 2026-06-03 20:27:53 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:30:06s. Time for last 1,000,000: 12s. Last read position: chr5:140,674,736
INFO 2026-06-03 20:27:59 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:30:11s. Time for last 1,000,000: 5s. Last read position: chr5:141,863,274
INFO 2026-06-03 20:28:08 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:30:21s. Time for last 1,000,000: 9s. Last read position: chr5:149,977,977
INFO 2026-06-03 20:28:16 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:30:28s. Time for last 1,000,000: 7s. Last read position: chr5:150,402,120
INFO 2026-06-03 20:28:22 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:30:34s. Time for last 1,000,000: 6s. Last read position: chr5:150,406,934
INFO 2026-06-03 20:28:30 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:30:42s. Time for last 1,000,000: 7s. Last read position: chr5:151,790,355
INFO 2026-06-03 20:28:39 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:30:51s. Time for last 1,000,000: 9s. Last read position: chr5:169,708,180
INFO 2026-06-03 20:28:57 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:31:09s. Time for last 1,000,000: 17s. Last read position: chr5:171,891,512
INFO 2026-06-03 20:29:02 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:31:14s. Time for last 1,000,000: 5s. Last read position: chr5:177,095,604
INFO 2026-06-03 20:29:10 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:31:22s. Time for last 1,000,000: 7s. Last read position: chr5:178,623,306
INFO 2026-06-03 20:29:27 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:31:39s. Time for last 1,000,000: 16s. Last read position: chr5:179,824,313
INFO 2026-06-03 20:29:36 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:31:48s. Time for last 1,000,000: 9s. Last read position: chr5:181,260,186
INFO 2026-06-03 20:29:42 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:31:55s. Time for last 1,000,000: 6s. Last read position: chr6:7,230,975
INFO 2026-06-03 20:29:48 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:32:01s. Time for last 1,000,000: 6s. Last read position: chr6:16,130,719
INFO 2026-06-03 20:29:54 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:32:06s. Time for last 1,000,000: 5s. Last read position: chr6:26,124,421
INFO 2026-06-03 20:29:56 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:32:08s. Time for last 1,000,000: 2s. Last read position: chr6:27,824,320
INFO 2026-06-03 20:30:00 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:32:12s. Time for last 1,000,000: 3s. Last read position: chr6:30,163,635
INFO 2026-06-03 20:30:03 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:32:16s. Time for last 1,000,000: 3s. Last read position: chr6:30,744,338
INFO 2026-06-03 20:30:14 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:32:26s. Time for last 1,000,000: 10s. Last read position: chr6:31,622,803
INFO 2026-06-03 20:30:23 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:32:35s. Time for last 1,000,000: 8s. Last read position: chr6:31,816,478
INFO 2026-06-03 20:30:27 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:32:40s. Time for last 1,000,000: 4s. Last read position: chr6:31,969,902
INFO 2026-06-03 20:30:33 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:32:46s. Time for last 1,000,000: 5s. Last read position: chr6:32,977,928
INFO 2026-06-03 20:30:41 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:32:53s. Time for last 1,000,000: 7s. Last read position: chr6:33,447,828
INFO 2026-06-03 20:30:47 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:32:59s. Time for last 1,000,000: 6s. Last read position: chr6:36,131,269
INFO 2026-06-03 20:30:51 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:33:04s. Time for last 1,000,000: 4s. Last read position: chr6:42,107,498
INFO 2026-06-03 20:31:00 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:33:12s. Time for last 1,000,000: 8s. Last read position: chr6:43,771,258
INFO 2026-06-03 20:31:07 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:33:19s. Time for last 1,000,000: 6s. Last read position: chr6:53,095,649
INFO 2026-06-03 20:31:54 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:34:06s. Time for last 1,000,000: 47s. Last read position: chr6:70,516,209
INFO 2026-06-03 20:32:12 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:34:24s. Time for last 1,000,000: 17s. Last read position: chr6:82,365,778
INFO 2026-06-03 20:32:21 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:34:33s. Time for last 1,000,000: 8s. Last read position: chr6:99,543,577
INFO 2026-06-03 20:32:28 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:34:41s. Time for last 1,000,000: 7s. Last read position: chr6:111,591,618
INFO 2026-06-03 20:32:37 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:34:49s. Time for last 1,000,000: 8s. Last read position: chr6:128,322,209
INFO 2026-06-03 20:32:53 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:35:05s. Time for last 1,000,000: 16s. Last read position: chr6:138,096,472
INFO 2026-06-03 20:33:00 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:35:12s. Time for last 1,000,000: 6s. Last read position: chr6:148,343,221
INFO 2026-06-03 20:33:14 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:35:27s. Time for last 1,000,000: 14s. Last read position: chr6:157,867,547
INFO 2026-06-03 20:33:20 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:35:33s. Time for last 1,000,000: 6s. Last read position: chr6:159,692,697
INFO 2026-06-03 20:33:34 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:35:46s. Time for last 1,000,000: 13s. Last read position: chr6:167,965,936
INFO 2026-06-03 20:33:44 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:35:57s. Time for last 1,000,000: 10s. Last read position: chr7:1,471,135
INFO 2026-06-03 20:33:50 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:36:03s. Time for last 1,000,000: 6s. Last read position: chr7:4,836,437
INFO 2026-06-03 20:33:57 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:36:09s. Time for last 1,000,000: 6s. Last read position: chr7:5,527,849
INFO 2026-06-03 20:34:06 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:36:18s. Time for last 1,000,000: 9s. Last read position: chr7:5,592,994
INFO 2026-06-03 20:34:12 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:36:24s. Time for last 1,000,000: 6s. Last read position: chr7:16,792,947
INFO 2026-06-03 20:34:28 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:36:41s. Time for last 1,000,000: 16s. Last read position: chr7:27,108,299
INFO 2026-06-03 20:34:38 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:36:50s. Time for last 1,000,000: 9s. Last read position: chr7:39,987,834
INFO 2026-06-03 20:34:44 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:36:57s. Time for last 1,000,000: 6s. Last read position: chr7:44,674,515
INFO 2026-06-03 20:34:53 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:37:06s. Time for last 1,000,000: 8s. Last read position: chr7:55,161,508
INFO 2026-06-03 20:35:00 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:37:13s. Time for last 1,000,000: 6s. Last read position: chr7:72,871,443
INFO 2026-06-03 20:35:03 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:37:16s. Time for last 1,000,000: 3s. Last read position: chr7:73,686,847
INFO 2026-06-03 20:35:09 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:37:21s. Time for last 1,000,000: 5s. Last read position: chr7:75,215,756
INFO 2026-06-03 20:35:13 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:37:25s. Time for last 1,000,000: 3s. Last read position: chr7:76,302,745
INFO 2026-06-03 20:35:18 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:37:31s. Time for last 1,000,000: 5s. Last read position: chr7:87,184,580
INFO 2026-06-03 20:35:58 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:38:10s. Time for last 1,000,000: 39s. Last read position: chr7:93,994,367
INFO 2026-06-03 20:36:10 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:38:22s. Time for last 1,000,000: 12s. Last read position: chr7:96,184,809
INFO 2026-06-03 20:36:23 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:38:35s. Time for last 1,000,000: 12s. Last read position: chr7:99,531,618
INFO 2026-06-03 20:36:30 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:38:43s. Time for last 1,000,000: 7s. Last read position: chr7:100,572,347
INFO 2026-06-03 20:36:37 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:38:49s. Time for last 1,000,000: 6s. Last read position: chr7:100,957,802
INFO 2026-06-03 20:36:39 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:38:51s. Time for last 1,000,000: 2s. Last read position: chr7:100,993,135
INFO 2026-06-03 20:36:40 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:38:53s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,444
INFO 2026-06-03 20:36:41 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:38:53s. Time for last 1,000,000: 0s. Last read position: chr7:100,996,002
INFO 2026-06-03 20:36:42 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:38:55s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,743
INFO 2026-06-03 20:36:45 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:38:57s. Time for last 1,000,000: 2s. Last read position: chr7:100,997,520
INFO 2026-06-03 20:36:46 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:38:58s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,333
INFO 2026-06-03 20:36:47 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:38:59s. Time for last 1,000,000: 0s. Last read position: chr7:100,999,300
INFO 2026-06-03 20:36:49 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:39:01s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,402
INFO 2026-06-03 20:36:50 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:39:03s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,316
INFO 2026-06-03 20:36:51 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:39:03s. Time for last 1,000,000: 0s. Last read position: chr7:101,002,078
INFO 2026-06-03 20:36:53 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:39:05s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,856
INFO 2026-06-03 20:36:56 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:39:08s. Time for last 1,000,000: 3s. Last read position: chr7:102,170,431
INFO 2026-06-03 20:37:03 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:39:15s. Time for last 1,000,000: 6s. Last read position: chr7:102,659,933
INFO 2026-06-03 20:37:18 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:39:30s. Time for last 1,000,000: 14s. Last read position: chr7:107,793,793
INFO 2026-06-03 20:37:39 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:39:52s. Time for last 1,000,000: 21s. Last read position: chr7:122,320,273
INFO 2026-06-03 20:37:46 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:39:59s. Time for last 1,000,000: 6s. Last read position: chr7:128,086,952
INFO 2026-06-03 20:37:53 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:40:06s. Time for last 1,000,000: 7s. Last read position: chr7:133,817,417
INFO 2026-06-03 20:38:00 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:40:12s. Time for last 1,000,000: 6s. Last read position: chr7:139,083,849
INFO 2026-06-03 20:38:09 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:40:21s. Time for last 1,000,000: 8s. Last read position: chr7:142,791,717
INFO 2026-06-03 20:38:12 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:40:24s. Time for last 1,000,000: 3s. Last read position: chr7:144,285,050
INFO 2026-06-03 20:38:15 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:40:28s. Time for last 1,000,000: 3s. Last read position: chr7:149,621,285
INFO 2026-06-03 20:38:22 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:40:34s. Time for last 1,000,000: 6s. Last read position: chr7:151,081,478
INFO 2026-06-03 20:38:40 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:40:52s. Time for last 1,000,000: 18s. Last read position: chr7:155,763,880
INFO 2026-06-03 20:38:48 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:41:00s. Time for last 1,000,000: 7s. Last read position: chr8:8,891,279
INFO 2026-06-03 20:39:06 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:41:19s. Time for last 1,000,000: 18s. Last read position: chr8:18,575,158
INFO 2026-06-03 20:39:15 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:41:28s. Time for last 1,000,000: 8s. Last read position: chr8:22,619,214
INFO 2026-06-03 20:39:23 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:41:35s. Time for last 1,000,000: 7s. Last read position: chr8:28,527,675
INFO 2026-06-03 20:39:28 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:41:41s. Time for last 1,000,000: 5s. Last read position: chr8:37,698,455
INFO 2026-06-03 20:39:39 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:41:51s. Time for last 1,000,000: 10s. Last read position: chr8:38,827,203
INFO 2026-06-03 20:39:52 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:42:05s. Time for last 1,000,000: 13s. Last read position: chr8:47,902,697
INFO 2026-06-03 20:40:02 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:42:14s. Time for last 1,000,000: 9s. Last read position: chr8:65,604,503
INFO 2026-06-03 20:40:11 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:42:23s. Time for last 1,000,000: 9s. Last read position: chr8:80,051,558
INFO 2026-06-03 20:40:17 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:42:30s. Time for last 1,000,000: 6s. Last read position: chr8:98,044,953
INFO 2026-06-03 20:40:38 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:42:50s. Time for last 1,000,000: 20s. Last read position: chr8:102,833,143
INFO 2026-06-03 20:40:47 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:42:59s. Time for last 1,000,000: 8s. Last read position: chr8:124,549,784
INFO 2026-06-03 20:40:57 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:43:09s. Time for last 1,000,000: 10s. Last read position: chr8:140,397,676
INFO 2026-06-03 20:41:09 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:43:21s. Time for last 1,000,000: 11s. Last read position: chr8:143,727,749
INFO 2026-06-03 20:41:12 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:43:25s. Time for last 1,000,000: 3s. Last read position: chr8:143,859,626
INFO 2026-06-03 20:41:13 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:43:25s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,612
INFO 2026-06-03 20:41:14 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:43:26s. Time for last 1,000,000: 0s. Last read position: chr8:143,863,631
INFO 2026-06-03 20:41:15 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:43:27s. Time for last 1,000,000: 0s. Last read position: chr8:143,865,789
INFO 2026-06-03 20:41:17 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:43:29s. Time for last 1,000,000: 2s. Last read position: chr8:143,919,217
INFO 2026-06-03 20:41:29 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:43:42s. Time for last 1,000,000: 12s. Last read position: chr8:144,051,288
INFO 2026-06-03 20:41:37 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:43:50s. Time for last 1,000,000: 8s. Last read position: chr8:144,509,781
INFO 2026-06-03 20:41:47 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:44:00s. Time for last 1,000,000: 10s. Last read position: chr9:6,413,447
INFO 2026-06-03 20:41:57 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:44:09s. Time for last 1,000,000: 9s. Last read position: chr9:27,218,801
INFO 2026-06-03 20:42:03 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:44:15s. Time for last 1,000,000: 5s. Last read position: chr9:35,061,629
INFO 2026-06-03 20:42:12 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:44:24s. Time for last 1,000,000: 8s. Last read position: chr9:36,234,072
INFO 2026-06-03 20:42:19 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:44:31s. Time for last 1,000,000: 7s. Last read position: chr9:71,698,084
INFO 2026-06-03 20:42:31 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:44:43s. Time for last 1,000,000: 11s. Last read position: chr9:83,412,589
INFO 2026-06-03 20:42:40 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:44:52s. Time for last 1,000,000: 9s. Last read position: chr9:92,719,006
INFO 2026-06-03 20:42:49 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:45:01s. Time for last 1,000,000: 9s. Last read position: chr9:95,916,346
INFO 2026-06-03 20:42:54 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:45:06s. Time for last 1,000,000: 4s. Last read position: chr9:101,552,560
INFO 2026-06-03 20:43:03 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:45:16s. Time for last 1,000,000: 9s. Last read position: chr9:112,227,468
INFO 2026-06-03 20:43:12 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:45:24s. Time for last 1,000,000: 8s. Last read position: chr9:115,046,663
INFO 2026-06-03 20:43:25 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:45:38s. Time for last 1,000,000: 13s. Last read position: chr9:121,770,577
INFO 2026-06-03 20:43:33 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:45:45s. Time for last 1,000,000: 7s. Last read position: chr9:127,450,743
INFO 2026-06-03 20:43:45 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:45:57s. Time for last 1,000,000: 11s. Last read position: chr9:128,258,119
INFO 2026-06-03 20:43:59 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:46:11s. Time for last 1,000,000: 13s. Last read position: chr9:129,099,876
INFO 2026-06-03 20:44:06 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:46:18s. Time for last 1,000,000: 7s. Last read position: chr9:131,470,784
INFO 2026-06-03 20:44:13 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:46:25s. Time for last 1,000,000: 6s. Last read position: chr9:133,363,621
INFO 2026-06-03 20:44:21 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:46:33s. Time for last 1,000,000: 8s. Last read position: chr9:135,485,699
INFO 2026-06-03 20:44:33 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:46:46s. Time for last 1,000,000: 12s. Last read position: chr9:136,519,554
INFO 2026-06-03 20:44:45 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:46:58s. Time for last 1,000,000: 12s. Last read position: chr9:137,110,885
INFO 2026-06-03 20:44:51 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:47:04s. Time for last 1,000,000: 6s. Last read position: chr10:239,480
INFO 2026-06-03 20:45:03 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:47:15s. Time for last 1,000,000: 11s. Last read position: chr10:8,009,997
INFO 2026-06-03 20:45:10 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:47:22s. Time for last 1,000,000: 7s. Last read position: chr10:24,524,360
INFO 2026-06-03 20:45:21 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:47:34s. Time for last 1,000,000: 11s. Last read position: chr10:32,021,083
INFO 2026-06-03 20:45:33 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:47:45s. Time for last 1,000,000: 11s. Last read position: chr10:43,557,068
INFO 2026-06-03 20:45:36 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:47:49s. Time for last 1,000,000: 3s. Last read position: chr10:49,473,563
INFO 2026-06-03 20:45:44 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:47:56s. Time for last 1,000,000: 7s. Last read position: chr10:68,337,233
INFO 2026-06-03 20:45:52 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:48:04s. Time for last 1,000,000: 7s. Last read position: chr10:73,053,484
INFO 2026-06-03 20:46:07 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:48:19s. Time for last 1,000,000: 15s. Last read position: chr10:77,926,346
INFO 2026-06-03 20:46:12 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:48:25s. Time for last 1,000,000: 5s. Last read position: chr10:87,009,791
INFO 2026-06-03 20:46:19 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:48:32s. Time for last 1,000,000: 7s. Last read position: chr10:93,681,482
INFO 2026-06-03 20:46:30 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:48:42s. Time for last 1,000,000: 10s. Last read position: chr10:97,748,307
INFO 2026-06-03 20:46:35 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:48:47s. Time for last 1,000,000: 5s. Last read position: chr10:102,141,268
INFO 2026-06-03 20:46:52 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:49:04s. Time for last 1,000,000: 16s. Last read position: chr10:104,062,282
INFO 2026-06-03 20:47:02 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:49:15s. Time for last 1,000,000: 10s. Last read position: chr10:117,374,744
INFO 2026-06-03 20:47:11 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:49:24s. Time for last 1,000,000: 9s. Last read position: chr10:122,489,473
INFO 2026-06-03 20:47:32 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:49:44s. Time for last 1,000,000: 20s. Last read position: chr10:122,602,060
INFO 2026-06-03 20:48:05 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:50:17s. Time for last 1,000,000: 33s. Last read position: chr10:122,643,121
INFO 2026-06-03 20:48:14 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:50:26s. Time for last 1,000,000: 8s. Last read position: chr10:132,405,195
INFO 2026-06-03 20:48:20 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:50:32s. Time for last 1,000,000: 6s. Last read position: chr11:319,932
INFO 2026-06-03 20:48:27 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:50:40s. Time for last 1,000,000: 7s. Last read position: chr11:640,480
INFO 2026-06-03 20:48:35 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:50:47s. Time for last 1,000,000: 7s. Last read position: chr11:1,075,867
INFO 2026-06-03 20:48:39 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:50:51s. Time for last 1,000,000: 4s. Last read position: chr11:1,083,495
INFO 2026-06-03 20:48:45 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:50:58s. Time for last 1,000,000: 6s. Last read position: chr11:1,088,294
INFO 2026-06-03 20:48:53 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:51:05s. Time for last 1,000,000: 7s. Last read position: chr11:1,097,277
INFO 2026-06-03 20:48:57 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:51:10s. Time for last 1,000,000: 4s. Last read position: chr11:1,239,529
INFO 2026-06-03 20:49:03 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:51:15s. Time for last 1,000,000: 5s. Last read position: chr11:1,243,089
INFO 2026-06-03 20:49:06 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:51:19s. Time for last 1,000,000: 3s. Last read position: chr11:1,243,829
INFO 2026-06-03 20:49:10 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:51:22s. Time for last 1,000,000: 3s. Last read position: chr11:1,244,495
INFO 2026-06-03 20:49:12 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:51:24s. Time for last 1,000,000: 2s. Last read position: chr11:1,245,128
INFO 2026-06-03 20:49:14 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:51:27s. Time for last 1,000,000: 2s. Last read position: chr11:1,246,046
INFO 2026-06-03 20:49:20 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:51:32s. Time for last 1,000,000: 5s. Last read position: chr11:1,247,125
INFO 2026-06-03 20:49:23 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:51:36s. Time for last 1,000,000: 3s. Last read position: chr11:1,247,836
INFO 2026-06-03 20:49:26 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:51:38s. Time for last 1,000,000: 2s. Last read position: chr11:1,248,458
INFO 2026-06-03 20:49:32 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:51:44s. Time for last 1,000,000: 6s. Last read position: chr11:1,249,035
INFO 2026-06-03 20:49:38 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:51:50s. Time for last 1,000,000: 5s. Last read position: chr11:1,250,013
INFO 2026-06-03 20:49:43 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:51:56s. Time for last 1,000,000: 5s. Last read position: chr11:1,250,764
INFO 2026-06-03 20:49:50 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:52:02s. Time for last 1,000,000: 6s. Last read position: chr11:1,598,157
INFO 2026-06-03 20:49:59 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:52:12s. Time for last 1,000,000: 9s. Last read position: chr11:3,771,835
INFO 2026-06-03 20:50:08 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:52:21s. Time for last 1,000,000: 8s. Last read position: chr11:8,717,749
INFO 2026-06-03 20:50:22 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:52:34s. Time for last 1,000,000: 13s. Last read position: chr11:13,963,046
INFO 2026-06-03 20:50:30 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:52:42s. Time for last 1,000,000: 7s. Last read position: chr11:22,726,337
INFO 2026-06-03 20:50:38 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:52:50s. Time for last 1,000,000: 8s. Last read position: chr11:43,318,778
INFO 2026-06-03 20:50:43 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:52:56s. Time for last 1,000,000: 5s. Last read position: chr11:46,374,398
INFO 2026-06-03 20:50:54 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:53:07s. Time for last 1,000,000: 10s. Last read position: chr11:48,123,848
INFO 2026-06-03 20:51:09 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:53:21s. Time for last 1,000,000: 14s. Last read position: chr11:58,579,503
INFO 2026-06-03 20:51:18 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:53:31s. Time for last 1,000,000: 9s. Last read position: chr11:61,840,348
INFO 2026-06-03 20:51:23 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:53:36s. Time for last 1,000,000: 5s. Last read position: chr11:62,527,875
INFO 2026-06-03 20:51:29 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:53:42s. Time for last 1,000,000: 5s. Last read position: chr11:62,722,851
INFO 2026-06-03 20:51:38 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:53:50s. Time for last 1,000,000: 8s. Last read position: chr11:64,262,540
INFO 2026-06-03 20:51:45 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:53:58s. Time for last 1,000,000: 7s. Last read position: chr11:65,120,740
INFO 2026-06-03 20:51:53 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:54:05s. Time for last 1,000,000: 7s. Last read position: chr11:65,618,431
INFO 2026-06-03 20:52:01 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:54:14s. Time for last 1,000,000: 8s. Last read position: chr11:66,070,585
INFO 2026-06-03 20:52:10 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:54:23s. Time for last 1,000,000: 9s. Last read position: chr11:67,279,443
INFO 2026-06-03 20:52:18 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:54:31s. Time for last 1,000,000: 7s. Last read position: chr11:68,158,374
INFO 2026-06-03 20:52:25 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:54:37s. Time for last 1,000,000: 6s. Last read position: chr11:70,273,888
INFO 2026-06-03 20:52:42 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:54:54s. Time for last 1,000,000: 17s. Last read position: chr11:72,754,918
INFO 2026-06-03 20:52:54 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:55:06s. Time for last 1,000,000: 11s. Last read position: chr11:75,568,751
INFO 2026-06-03 20:53:04 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:55:16s. Time for last 1,000,000: 10s. Last read position: chr11:85,983,930
INFO 2026-06-03 20:53:12 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:55:25s. Time for last 1,000,000: 8s. Last read position: chr11:102,350,191
INFO 2026-06-03 20:53:20 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:55:33s. Time for last 1,000,000: 7s. Last read position: chr11:113,329,963
INFO 2026-06-03 20:53:29 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:55:41s. Time for last 1,000,000: 8s. Last read position: chr11:118,504,114
INFO 2026-06-03 20:53:38 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:55:51s. Time for last 1,000,000: 9s. Last read position: chr11:119,420,076
INFO 2026-06-03 20:53:48 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:56:00s. Time for last 1,000,000: 9s. Last read position: chr11:124,654,707
INFO 2026-06-03 20:53:56 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:56:08s. Time for last 1,000,000: 8s. Last read position: chr11:130,126,797
INFO 2026-06-03 20:54:05 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:56:18s. Time for last 1,000,000: 9s. Last read position: chr12:1,780,486
INFO 2026-06-03 20:54:16 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:56:28s. Time for last 1,000,000: 10s. Last read position: chr12:6,236,258
INFO 2026-06-03 20:54:37 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:56:49s. Time for last 1,000,000: 20s. Last read position: chr12:6,766,538
INFO 2026-06-03 20:54:43 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:56:55s. Time for last 1,000,000: 6s. Last read position: chr12:7,483,374
INFO 2026-06-03 20:54:48 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:57:01s. Time for last 1,000,000: 5s. Last read position: chr12:11,869,898
INFO 2026-06-03 20:54:56 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:57:08s. Time for last 1,000,000: 7s. Last read position: chr12:26,122,817
INFO 2026-06-03 20:55:06 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:57:18s. Time for last 1,000,000: 9s. Last read position: chr12:42,144,421
INFO 2026-06-03 20:55:16 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:57:28s. Time for last 1,000,000: 10s. Last read position: chr12:49,026,979
INFO 2026-06-03 20:55:21 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:57:34s. Time for last 1,000,000: 5s. Last read position: chr12:49,185,294
INFO 2026-06-03 20:55:30 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:57:42s. Time for last 1,000,000: 8s. Last read position: chr12:51,240,884
INFO 2026-06-03 20:55:37 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:57:49s. Time for last 1,000,000: 7s. Last read position: chr12:53,037,548
INFO 2026-06-03 20:55:48 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:58:01s. Time for last 1,000,000: 11s. Last read position: chr12:53,722,051
INFO 2026-06-03 20:56:02 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:58:15s. Time for last 1,000,000: 14s. Last read position: chr12:55,803,668
INFO 2026-06-03 20:56:13 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:58:25s. Time for last 1,000,000: 10s. Last read position: chr12:56,310,946
INFO 2026-06-03 20:56:24 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:58:36s. Time for last 1,000,000: 11s. Last read position: chr12:57,095,304
INFO 2026-06-03 20:56:38 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:58:50s. Time for last 1,000,000: 14s. Last read position: chr12:57,231,479
INFO 2026-06-03 20:56:50 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:59:02s. Time for last 1,000,000: 11s. Last read position: chr12:62,965,328
INFO 2026-06-03 20:56:57 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:59:10s. Time for last 1,000,000: 7s. Last read position: chr12:70,572,063
INFO 2026-06-03 20:57:07 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:59:20s. Time for last 1,000,000: 9s. Last read position: chr12:89,524,205
INFO 2026-06-03 20:57:14 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:59:26s. Time for last 1,000,000: 6s. Last read position: chr12:101,352,088
INFO 2026-06-03 20:57:26 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:59:39s. Time for last 1,000,000: 12s. Last read position: chr12:108,623,762
INFO 2026-06-03 20:57:37 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:59:50s. Time for last 1,000,000: 10s. Last read position: chr12:112,013,501
INFO 2026-06-03 20:57:50 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:00:02s. Time for last 1,000,000: 12s. Last read position: chr12:115,991,200
INFO 2026-06-03 20:58:02 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:00:15s. Time for last 1,000,000: 12s. Last read position: chr12:120,291,779
INFO 2026-06-03 20:58:09 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:00:22s. Time for last 1,000,000: 6s. Last read position: chr12:122,244,696
INFO 2026-06-03 20:58:17 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:00:29s. Time for last 1,000,000: 7s. Last read position: chr12:124,337,009
INFO 2026-06-03 20:58:29 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:00:41s. Time for last 1,000,000: 11s. Last read position: chr12:132,044,172
INFO 2026-06-03 20:58:37 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:00:49s. Time for last 1,000,000: 7s. Last read position: chr13:19,993,124
INFO 2026-06-03 20:58:43 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:00:55s. Time for last 1,000,000: 6s. Last read position: chr13:27,254,244
INFO 2026-06-03 20:58:51 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:01:04s. Time for last 1,000,000: 8s. Last read position: chr13:37,590,387
INFO 2026-06-03 20:58:57 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:01:10s. Time for last 1,000,000: 6s. Last read position: chr13:45,491,438
INFO 2026-06-03 20:59:05 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:01:17s. Time for last 1,000,000: 7s. Last read position: chr13:57,634,543
INFO 2026-06-03 20:59:14 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:01:27s. Time for last 1,000,000: 9s. Last read position: chr13:80,337,517
INFO 2026-06-03 20:59:27 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:01:39s. Time for last 1,000,000: 12s. Last read position: chr13:106,559,564
INFO 2026-06-03 20:59:37 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:01:50s. Time for last 1,000,000: 10s. Last read position: chr13:110,207,418
INFO 2026-06-03 20:59:50 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:02:02s. Time for last 1,000,000: 12s. Last read position: chr13:110,508,074
INFO 2026-06-03 20:59:59 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:02:12s. Time for last 1,000,000: 9s. Last read position: chr13:114,282,042
INFO 2026-06-03 21:00:12 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:02:24s. Time for last 1,000,000: 12s. Last read position: chr14:22,836,813
INFO 2026-06-03 21:00:19 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:02:32s. Time for last 1,000,000: 7s. Last read position: chr14:24,068,844
INFO 2026-06-03 21:00:33 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:02:46s. Time for last 1,000,000: 13s. Last read position: chr14:31,149,132
INFO 2026-06-03 21:00:42 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:02:54s. Time for last 1,000,000: 8s. Last read position: chr14:49,586,658
INFO 2026-06-03 21:00:48 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:03:00s. Time for last 1,000,000: 6s. Last read position: chr14:55,138,215
INFO 2026-06-03 21:01:09 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:03:22s. Time for last 1,000,000: 21s. Last read position: chr14:64,162,252
INFO 2026-06-03 21:01:26 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:03:38s. Time for last 1,000,000: 16s. Last read position: chr14:68,874,977
INFO 2026-06-03 21:01:37 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:03:50s. Time for last 1,000,000: 11s. Last read position: chr14:73,277,133
INFO 2026-06-03 21:01:44 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:03:57s. Time for last 1,000,000: 7s. Last read position: chr14:75,281,199
INFO 2026-06-03 21:01:52 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:04:05s. Time for last 1,000,000: 7s. Last read position: chr14:91,798,342
INFO 2026-06-03 21:01:59 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:04:12s. Time for last 1,000,000: 7s. Last read position: chr14:94,383,128
INFO 2026-06-03 21:02:20 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:04:32s. Time for last 1,000,000: 20s. Last read position: chr14:102,005,054
INFO 2026-06-03 21:03:31 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:05:43s. Time for last 1,000,000: 71s. Last read position: chr14:103,520,255
INFO 2026-06-03 21:03:50 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:06:02s. Time for last 1,000,000: 19s. Last read position: chr14:104,941,930
INFO 2026-06-03 21:03:55 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:06:08s. Time for last 1,000,000: 5s. Last read position: chr14:105,707,254
INFO 2026-06-03 21:04:12 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:06:24s. Time for last 1,000,000: 16s. Last read position: chr15:28,222,064
INFO 2026-06-03 21:04:19 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:06:32s. Time for last 1,000,000: 7s. Last read position: chr15:33,066,721
INFO 2026-06-03 21:04:25 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:06:37s. Time for last 1,000,000: 5s. Last read position: chr15:40,200,947
INFO 2026-06-03 21:04:32 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:06:44s. Time for last 1,000,000: 6s. Last read position: chr15:41,834,825
INFO 2026-06-03 21:04:40 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:06:52s. Time for last 1,000,000: 7s. Last read position: chr15:43,766,741
INFO 2026-06-03 21:04:47 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:07:00s. Time for last 1,000,000: 7s. Last read position: chr15:45,135,641
INFO 2026-06-03 21:04:57 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:07:10s. Time for last 1,000,000: 10s. Last read position: chr15:55,185,369
INFO 2026-06-03 21:05:10 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:07:23s. Time for last 1,000,000: 13s. Last read position: chr15:60,393,206
INFO 2026-06-03 21:05:26 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:07:39s. Time for last 1,000,000: 15s. Last read position: chr15:64,460,592
INFO 2026-06-03 21:05:32 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:07:45s. Time for last 1,000,000: 5s. Last read position: chr15:69,453,704
INFO 2026-06-03 21:05:43 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:07:55s. Time for last 1,000,000: 10s. Last read position: chr15:74,033,265
INFO 2026-06-03 21:05:52 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:08:05s. Time for last 1,000,000: 9s. Last read position: chr15:75,650,549
INFO 2026-06-03 21:06:01 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:08:13s. Time for last 1,000,000: 8s. Last read position: chr15:80,922,065
INFO 2026-06-03 21:06:05 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:08:18s. Time for last 1,000,000: 4s. Last read position: chr15:85,543,782
INFO 2026-06-03 21:06:16 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:08:28s. Time for last 1,000,000: 10s. Last read position: chr15:89,623,888
INFO 2026-06-03 21:06:25 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:08:37s. Time for last 1,000,000: 8s. Last read position: chr15:92,953,403
INFO 2026-06-03 21:06:33 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:08:45s. Time for last 1,000,000: 7s. Last read position: chr16:372,245
INFO 2026-06-03 21:06:42 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:08:54s. Time for last 1,000,000: 9s. Last read position: chr16:1,195,506
INFO 2026-06-03 21:06:52 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:09:05s. Time for last 1,000,000: 10s. Last read position: chr16:1,980,006
INFO 2026-06-03 21:07:17 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:09:29s. Time for last 1,000,000: 24s. Last read position: chr16:2,297,821
INFO 2026-06-03 21:07:27 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:09:39s. Time for last 1,000,000: 9s. Last read position: chr16:2,766,491
INFO 2026-06-03 21:07:37 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:09:49s. Time for last 1,000,000: 9s. Last read position: chr16:3,476,280
INFO 2026-06-03 21:07:47 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:09:59s. Time for last 1,000,000: 10s. Last read position: chr16:8,801,816
INFO 2026-06-03 21:07:55 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 01:10:08s. Time for last 1,000,000: 8s. Last read position: chr16:14,733,298
INFO 2026-06-03 21:08:02 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 01:10:14s. Time for last 1,000,000: 6s. Last read position: chr16:15,363,972
INFO 2026-06-03 21:08:09 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 01:10:21s. Time for last 1,000,000: 6s. Last read position: chr16:16,360,816
INFO 2026-06-03 21:08:11 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 01:10:23s. Time for last 1,000,000: 1s. Last read position: chr16:18,393,453
INFO 2026-06-03 21:08:19 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 01:10:31s. Time for last 1,000,000: 7s. Last read position: chr16:21,250,697
INFO 2026-06-03 21:08:21 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 01:10:34s. Time for last 1,000,000: 2s. Last read position: chr16:21,834,932
INFO 2026-06-03 21:08:25 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 01:10:37s. Time for last 1,000,000: 3s. Last read position: chr16:22,522,086
INFO 2026-06-03 21:08:29 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 01:10:42s. Time for last 1,000,000: 4s. Last read position: chr16:23,691,319
INFO 2026-06-03 21:08:39 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 01:10:51s. Time for last 1,000,000: 9s. Last read position: chr16:28,495,356
INFO 2026-06-03 21:08:47 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 01:10:59s. Time for last 1,000,000: 7s. Last read position: chr16:29,383,848
INFO 2026-06-03 21:08:49 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 01:11:01s. Time for last 1,000,000: 1s. Last read position: chr16:29,806,693
INFO 2026-06-03 21:08:58 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 01:11:10s. Time for last 1,000,000: 9s. Last read position: chr16:30,086,281
INFO 2026-06-03 21:09:01 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 01:11:13s. Time for last 1,000,000: 3s. Last read position: chr16:30,532,728
INFO 2026-06-03 21:09:07 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 01:11:19s. Time for last 1,000,000: 6s. Last read position: chr16:31,117,784
INFO 2026-06-03 21:09:15 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 01:11:27s. Time for last 1,000,000: 7s. Last read position: chr16:31,916,355
INFO 2026-06-03 21:09:22 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 01:11:34s. Time for last 1,000,000: 7s. Last read position: chr16:55,485,696
INFO 2026-06-03 21:09:37 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 01:11:49s. Time for last 1,000,000: 15s. Last read position: chr16:57,774,979
INFO 2026-06-03 21:09:46 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 01:11:58s. Time for last 1,000,000: 8s. Last read position: chr16:67,237,603
INFO 2026-06-03 21:09:56 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 01:12:08s. Time for last 1,000,000: 9s. Last read position: chr16:68,819,298
INFO 2026-06-03 21:10:07 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 01:12:19s. Time for last 1,000,000: 11s. Last read position: chr16:70,514,389
INFO 2026-06-03 21:10:14 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 01:12:26s. Time for last 1,000,000: 7s. Last read position: chr16:74,606,727
INFO 2026-06-03 21:10:20 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 01:12:32s. Time for last 1,000,000: 5s. Last read position: chr16:83,912,287
INFO 2026-06-03 21:10:26 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 01:12:39s. Time for last 1,000,000: 6s. Last read position: chr16:88,428,281
INFO 2026-06-03 21:10:31 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 01:12:44s. Time for last 1,000,000: 4s. Last read position: chr16:88,805,497
INFO 2026-06-03 21:10:46 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 01:12:58s. Time for last 1,000,000: 14s. Last read position: chr16:89,816,566
INFO 2026-06-03 21:11:00 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 01:13:12s. Time for last 1,000,000: 13s. Last read position: chr17:1,400,082
INFO 2026-06-03 21:11:08 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 01:13:21s. Time for last 1,000,000: 8s. Last read position: chr17:2,667,012
INFO 2026-06-03 21:11:17 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 01:13:30s. Time for last 1,000,000: 8s. Last read position: chr17:4,715,019
INFO 2026-06-03 21:11:26 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 01:13:38s. Time for last 1,000,000: 8s. Last read position: chr17:5,559,644
INFO 2026-06-03 21:11:36 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 01:13:48s. Time for last 1,000,000: 9s. Last read position: chr17:7,439,781
INFO 2026-06-03 21:11:44 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 01:13:56s. Time for last 1,000,000: 8s. Last read position: chr17:7,742,928
INFO 2026-06-03 21:11:53 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 01:14:05s. Time for last 1,000,000: 9s. Last read position: chr17:8,880,667
INFO 2026-06-03 21:12:05 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 01:14:17s. Time for last 1,000,000: 11s. Last read position: chr17:17,143,657
INFO 2026-06-03 21:12:13 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 01:14:25s. Time for last 1,000,000: 8s. Last read position: chr17:18,977,736
INFO 2026-06-03 21:12:22 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 01:14:35s. Time for last 1,000,000: 9s. Last read position: chr17:28,620,509
INFO 2026-06-03 21:12:32 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 01:14:45s. Time for last 1,000,000: 10s. Last read position: chr17:29,702,996
INFO 2026-06-03 21:12:44 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 01:14:56s. Time for last 1,000,000: 11s. Last read position: chr17:35,137,083
INFO 2026-06-03 21:12:53 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 01:15:05s. Time for last 1,000,000: 8s. Last read position: chr17:37,744,754
INFO 2026-06-03 21:12:57 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 01:15:09s. Time for last 1,000,000: 4s. Last read position: chr17:39,409,810
INFO 2026-06-03 21:13:11 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 01:15:23s. Time for last 1,000,000: 13s. Last read position: chr17:40,129,387
INFO 2026-06-03 21:13:16 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 01:15:28s. Time for last 1,000,000: 4s. Last read position: chr17:41,813,047
INFO 2026-06-03 21:13:30 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 01:15:42s. Time for last 1,000,000: 14s. Last read position: chr17:42,718,464
INFO 2026-06-03 21:13:39 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 01:15:51s. Time for last 1,000,000: 9s. Last read position: chr17:44,323,481
INFO 2026-06-03 21:13:47 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 01:15:59s. Time for last 1,000,000: 7s. Last read position: chr17:45,608,778
INFO 2026-06-03 21:13:56 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 01:16:09s. Time for last 1,000,000: 9s. Last read position: chr17:47,976,771
INFO 2026-06-03 21:14:03 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 01:16:16s. Time for last 1,000,000: 6s. Last read position: chr17:50,185,807
INFO 2026-06-03 21:14:08 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 01:16:21s. Time for last 1,000,000: 4s. Last read position: chr17:50,187,522
INFO 2026-06-03 21:14:14 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 01:16:26s. Time for last 1,000,000: 5s. Last read position: chr17:50,188,910
INFO 2026-06-03 21:14:20 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 01:16:32s. Time for last 1,000,000: 5s. Last read position: chr17:50,189,717
INFO 2026-06-03 21:14:26 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 01:16:38s. Time for last 1,000,000: 6s. Last read position: chr17:50,190,886
INFO 2026-06-03 21:14:33 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 01:16:45s. Time for last 1,000,000: 7s. Last read position: chr17:50,192,796
INFO 2026-06-03 21:14:41 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 01:16:53s. Time for last 1,000,000: 7s. Last read position: chr17:50,194,396
INFO 2026-06-03 21:14:49 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 01:17:01s. Time for last 1,000,000: 8s. Last read position: chr17:50,195,570
INFO 2026-06-03 21:14:58 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 01:17:11s. Time for last 1,000,000: 9s. Last read position: chr17:50,196,512
INFO 2026-06-03 21:15:09 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 01:17:21s. Time for last 1,000,000: 10s. Last read position: chr17:50,198,438
INFO 2026-06-03 21:15:20 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 01:17:32s. Time for last 1,000,000: 11s. Last read position: chr17:50,355,884
INFO 2026-06-03 21:15:29 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 01:17:41s. Time for last 1,000,000: 8s. Last read position: chr17:57,106,376
INFO 2026-06-03 21:15:37 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 01:17:50s. Time for last 1,000,000: 8s. Last read position: chr17:59,682,392
INFO 2026-06-03 21:15:46 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 01:17:59s. Time for last 1,000,000: 8s. Last read position: chr17:63,632,732
INFO 2026-06-03 21:15:57 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 01:18:09s. Time for last 1,000,000: 10s. Last read position: chr17:67,109,650
INFO 2026-06-03 21:16:08 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 01:18:20s. Time for last 1,000,000: 11s. Last read position: chr17:73,227,177
INFO 2026-06-03 21:16:16 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 01:18:29s. Time for last 1,000,000: 8s. Last read position: chr17:75,570,130
INFO 2026-06-03 21:16:39 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 01:18:51s. Time for last 1,000,000: 22s. Last read position: chr17:75,830,464
INFO 2026-06-03 21:16:46 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 01:18:58s. Time for last 1,000,000: 7s. Last read position: chr17:76,767,424
INFO 2026-06-03 21:16:55 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 01:19:07s. Time for last 1,000,000: 9s. Last read position: chr17:78,974,718
INFO 2026-06-03 21:17:06 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 01:19:18s. Time for last 1,000,000: 10s. Last read position: chr17:80,373,099
INFO 2026-06-03 21:17:21 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 01:19:33s. Time for last 1,000,000: 15s. Last read position: chr17:81,843,870
INFO 2026-06-03 21:17:41 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 01:19:53s. Time for last 1,000,000: 20s. Last read position: chr17:82,085,689
INFO 2026-06-03 21:17:52 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 01:20:04s. Time for last 1,000,000: 10s. Last read position: chr18:2,656,199
INFO 2026-06-03 21:18:00 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 01:20:12s. Time for last 1,000,000: 8s. Last read position: chr18:12,329,751
INFO 2026-06-03 21:18:09 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 01:20:21s. Time for last 1,000,000: 8s. Last read position: chr18:31,524,860
INFO 2026-06-03 21:18:19 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 01:20:31s. Time for last 1,000,000: 9s. Last read position: chr18:49,489,361
INFO 2026-06-03 21:18:41 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 01:20:53s. Time for last 1,000,000: 22s. Last read position: chr18:59,354,541
INFO 2026-06-03 21:18:52 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 01:21:04s. Time for last 1,000,000: 11s. Last read position: chr18:79,988,238
INFO 2026-06-03 21:19:06 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 01:21:18s. Time for last 1,000,000: 13s. Last read position: chr19:932,647
INFO 2026-06-03 21:19:21 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 01:21:33s. Time for last 1,000,000: 14s. Last read position: chr19:1,299,958
INFO 2026-06-03 21:19:31 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 01:21:44s. Time for last 1,000,000: 10s. Last read position: chr19:2,046,367
INFO 2026-06-03 21:19:40 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 01:21:53s. Time for last 1,000,000: 9s. Last read position: chr19:3,178,978
INFO 2026-06-03 21:19:47 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 01:21:59s. Time for last 1,000,000: 6s. Last read position: chr19:4,433,427
INFO 2026-06-03 21:19:58 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 01:22:10s. Time for last 1,000,000: 11s. Last read position: chr19:5,785,430
INFO 2026-06-03 21:20:08 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 01:22:20s. Time for last 1,000,000: 9s. Last read position: chr19:6,903,859
INFO 2026-06-03 21:20:20 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 01:22:32s. Time for last 1,000,000: 12s. Last read position: chr19:8,390,447
INFO 2026-06-03 21:20:42 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 01:22:54s. Time for last 1,000,000: 21s. Last read position: chr19:10,284,292
INFO 2026-06-03 21:21:03 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 01:23:15s. Time for last 1,000,000: 21s. Last read position: chr19:10,986,332
INFO 2026-06-03 21:21:40 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 01:23:52s. Time for last 1,000,000: 36s. Last read position: chr19:12,232,048
INFO 2026-06-03 21:21:55 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 01:24:08s. Time for last 1,000,000: 15s. Last read position: chr19:13,145,361
INFO 2026-06-03 21:22:09 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 01:24:22s. Time for last 1,000,000: 14s. Last read position: chr19:14,471,653
INFO 2026-06-03 21:22:26 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 01:24:38s. Time for last 1,000,000: 16s. Last read position: chr19:15,239,673
INFO 2026-06-03 21:22:47 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 01:24:59s. Time for last 1,000,000: 20s. Last read position: chr19:16,324,968
INFO 2026-06-03 21:23:04 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 01:25:16s. Time for last 1,000,000: 16s. Last read position: chr19:17,721,004
INFO 2026-06-03 21:23:14 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 01:25:26s. Time for last 1,000,000: 10s. Last read position: chr19:18,432,037
INFO 2026-06-03 21:23:28 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 01:25:40s. Time for last 1,000,000: 13s. Last read position: chr19:19,626,862
INFO 2026-06-03 21:23:40 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 01:25:53s. Time for last 1,000,000: 12s. Last read position: chr19:34,466,979
INFO 2026-06-03 21:23:58 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 01:26:10s. Time for last 1,000,000: 17s. Last read position: chr19:35,721,567
INFO 2026-06-03 21:24:14 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 01:26:27s. Time for last 1,000,000: 16s. Last read position: chr19:38,376,395
INFO 2026-06-03 21:24:29 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 01:26:41s. Time for last 1,000,000: 14s. Last read position: chr19:39,381,002
INFO 2026-06-03 21:24:41 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 01:26:53s. Time for last 1,000,000: 11s. Last read position: chr19:39,870,404
INFO 2026-06-03 21:24:45 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 01:26:58s. Time for last 1,000,000: 4s. Last read position: chr19:39,892,074
INFO 2026-06-03 21:24:54 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 01:27:06s. Time for last 1,000,000: 8s. Last read position: chr19:39,943,380
INFO 2026-06-03 21:25:18 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 01:27:31s. Time for last 1,000,000: 24s. Last read position: chr19:41,264,618
INFO 2026-06-03 21:25:27 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 01:27:40s. Time for last 1,000,000: 9s. Last read position: chr19:41,717,546
INFO 2026-06-03 21:25:42 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 01:27:54s. Time for last 1,000,000: 14s. Last read position: chr19:42,199,558
INFO 2026-06-03 21:25:56 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 01:28:08s. Time for last 1,000,000: 13s. Last read position: chr19:42,512,369
INFO 2026-06-03 21:26:06 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 01:28:19s. Time for last 1,000,000: 10s. Last read position: chr19:44,948,465
INFO 2026-06-03 21:26:19 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 01:28:32s. Time for last 1,000,000: 12s. Last read position: chr19:45,821,083
INFO 2026-06-03 21:26:28 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 01:28:40s. Time for last 1,000,000: 8s. Last read position: chr19:47,417,346
INFO 2026-06-03 21:26:36 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 01:28:48s. Time for last 1,000,000: 8s. Last read position: chr19:48,845,388
INFO 2026-06-03 21:26:49 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 01:29:02s. Time for last 1,000,000: 13s. Last read position: chr19:49,497,570
INFO 2026-06-03 21:27:03 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 01:29:16s. Time for last 1,000,000: 14s. Last read position: chr19:49,881,394
INFO 2026-06-03 21:27:22 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 01:29:35s. Time for last 1,000,000: 18s. Last read position: chr19:51,746,876
INFO 2026-06-03 21:27:32 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 01:29:45s. Time for last 1,000,000: 9s. Last read position: chr19:54,171,874
INFO 2026-06-03 21:27:46 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 01:29:58s. Time for last 1,000,000: 13s. Last read position: chr19:54,595,803
INFO 2026-06-03 21:27:52 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 01:30:04s. Time for last 1,000,000: 6s. Last read position: chr19:55,659,270
INFO 2026-06-03 21:28:00 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 01:30:13s. Time for last 1,000,000: 8s. Last read position: chr19:58,394,524
INFO 2026-06-03 21:28:15 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 01:30:28s. Time for last 1,000,000: 15s. Last read position: chr20:2,658,704
INFO 2026-06-03 21:28:26 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 01:30:38s. Time for last 1,000,000: 10s. Last read position: chr20:6,006,442
INFO 2026-06-03 21:28:44 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 01:30:57s. Time for last 1,000,000: 18s. Last read position: chr20:18,524,647
INFO 2026-06-03 21:28:54 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 01:31:06s. Time for last 1,000,000: 9s. Last read position: chr20:25,526,451
INFO 2026-06-03 21:29:08 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 01:31:20s. Time for last 1,000,000: 14s. Last read position: chr20:34,741,308
INFO 2026-06-03 21:29:24 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 01:31:37s. Time for last 1,000,000: 16s. Last read position: chr20:36,688,768
INFO 2026-06-03 21:29:35 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 01:31:48s. Time for last 1,000,000: 10s. Last read position: chr20:44,202,960
INFO 2026-06-03 21:29:54 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 01:32:06s. Time for last 1,000,000: 18s. Last read position: chr20:46,063,362
INFO 2026-06-03 21:30:09 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 01:32:22s. Time for last 1,000,000: 15s. Last read position: chr20:50,691,195
INFO 2026-06-03 21:30:23 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 01:32:35s. Time for last 1,000,000: 13s. Last read position: chr20:58,990,941
INFO 2026-06-03 21:30:33 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 01:32:45s. Time for last 1,000,000: 10s. Last read position: chr20:62,813,503
INFO 2026-06-03 21:30:39 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 01:32:51s. Time for last 1,000,000: 6s. Last read position: chr20:63,882,676
INFO 2026-06-03 21:30:41 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 01:32:54s. Time for last 1,000,000: 2s. Last read position: chr21:8,216,919
INFO 2026-06-03 21:30:42 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 01:32:54s. Time for last 1,000,000: 0s. Last read position: chr21:8,397,750
INFO 2026-06-03 21:30:43 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 01:32:56s. Time for last 1,000,000: 1s. Last read position: chr21:8,442,248
INFO 2026-06-03 21:30:46 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 01:32:58s. Time for last 1,000,000: 2s. Last read position: chr21:25,975,180
INFO 2026-06-03 21:31:00 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 01:33:12s. Time for last 1,000,000: 13s. Last read position: chr21:33,552,069
INFO 2026-06-03 21:31:23 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 01:33:36s. Time for last 1,000,000: 23s. Last read position: chr21:38,818,622
INFO 2026-06-03 21:31:44 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 01:33:57s. Time for last 1,000,000: 21s. Last read position: chr21:42,366,411
INFO 2026-06-03 21:32:00 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 01:34:12s. Time for last 1,000,000: 15s. Last read position: chr21:45,456,044
INFO 2026-06-03 21:32:10 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 01:34:23s. Time for last 1,000,000: 10s. Last read position: chr21:45,994,220
INFO 2026-06-03 21:32:26 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 01:34:38s. Time for last 1,000,000: 15s. Last read position: chr21:46,126,160
INFO 2026-06-03 21:32:38 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 01:34:50s. Time for last 1,000,000: 11s. Last read position: chr22:18,552,509
INFO 2026-06-03 21:32:46 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 01:34:59s. Time for last 1,000,000: 8s. Last read position: chr22:21,478,053
INFO 2026-06-03 21:32:55 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 01:35:08s. Time for last 1,000,000: 8s. Last read position: chr22:23,894,521
INFO 2026-06-03 21:33:03 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 01:35:16s. Time for last 1,000,000: 8s. Last read position: chr22:28,800,379
INFO 2026-06-03 21:33:29 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 01:35:41s. Time for last 1,000,000: 25s. Last read position: chr22:30,243,814
INFO 2026-06-03 21:33:47 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 01:36:00s. Time for last 1,000,000: 18s. Last read position: chr22:32,397,980
INFO 2026-06-03 21:33:56 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 01:36:09s. Time for last 1,000,000: 9s. Last read position: chr22:36,320,229
INFO 2026-06-03 21:34:04 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 01:36:17s. Time for last 1,000,000: 7s. Last read position: chr22:37,679,659
INFO 2026-06-03 21:34:12 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 01:36:25s. Time for last 1,000,000: 8s. Last read position: chr22:38,741,535
INFO 2026-06-03 21:34:19 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 01:36:31s. Time for last 1,000,000: 6s. Last read position: chr22:41,150,153
INFO 2026-06-03 21:34:32 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 01:36:44s. Time for last 1,000,000: 12s. Last read position: chr22:42,383,845
INFO 2026-06-03 21:34:44 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 01:36:56s. Time for last 1,000,000: 11s. Last read position: chr22:46,658,296
INFO 2026-06-03 21:35:00 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 01:37:12s. Time for last 1,000,000: 16s. Last read position: chr22:50,444,047
INFO 2026-06-03 21:35:12 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 01:37:25s. Time for last 1,000,000: 12s. Last read position: chrX:1,442,197
INFO 2026-06-03 21:35:18 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 01:37:30s. Time for last 1,000,000: 5s. Last read position: chrX:15,331,637
INFO 2026-06-03 21:35:30 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 01:37:42s. Time for last 1,000,000: 11s. Last read position: chrX:32,389,581
INFO 2026-06-03 21:35:56 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 01:38:09s. Time for last 1,000,000: 26s. Last read position: chrX:44,450,907
INFO 2026-06-03 21:36:07 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 01:38:19s. Time for last 1,000,000: 10s. Last read position: chrX:48,691,079
INFO 2026-06-03 21:36:17 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 01:38:30s. Time for last 1,000,000: 10s. Last read position: chrX:53,279,703
INFO 2026-06-03 21:36:36 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 01:38:48s. Time for last 1,000,000: 18s. Last read position: chrX:66,200,680
INFO 2026-06-03 21:36:52 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 01:39:05s. Time for last 1,000,000: 16s. Last read position: chrX:72,272,678
INFO 2026-06-03 21:37:01 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 01:39:13s. Time for last 1,000,000: 8s. Last read position: chrX:101,035,617
INFO 2026-06-03 21:37:07 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 01:39:20s. Time for last 1,000,000: 6s. Last read position: chrX:120,436,050
INFO 2026-06-03 21:37:16 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 01:39:29s. Time for last 1,000,000: 8s. Last read position: chrX:149,482,781
INFO 2026-06-03 21:37:24 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 01:39:36s. Time for last 1,000,000: 7s. Last read position: chrX:154,348,809
INFO 2026-06-03 21:37:45 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 01:39:57s. Time for last 1,000,000: 21s. Last read position: chrX:154,467,361
INFO 2026-06-03 21:37:48 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 01:40:00s. Time for last 1,000,000: 2s. Last read position: GL000220.1:114,150
INFO 2026-06-03 21:37:48 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 01:40:01s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,124
INFO 2026-06-03 21:37:49 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 01:40:01s. Time for last 1,000,000: 0s. Last read position: KI270733.1:130,818
INFO 2026-06-03 21:37:50 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 01:40:02s. Time for last 1,000,000: 0s. Last read position: KI270733.1:176,048
INFO 2026-06-03 21:37:50 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 01:40:03s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 21:37:51 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 01:40:03s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 21:37:52 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 01:40:04s. Time for last 1,000,000: 0s. Last read position: */*
[Wed Jun 03 21:37:54 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 100.16 minutes.
Runtime.totalMemory()=3399483392