File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/02caa8bce6b3540e8868c61087f08d/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 21:10:10
                             Started mapping on |	Jun 03 21:16:56
                                    Finished on |	Jun 03 22:28:49
       Mapping speed, Million of reads per hour |	247.40

                          Number of input reads |	296397279
                      Average input read length |	247
                                    UNIQUE READS:
                   Uniquely mapped reads number |	284483601
                        Uniquely mapped reads % |	95.98%
                          Average mapped length |	247.05
                       Number of splices: Total |	297850736
            Number of splices: Annotated (sjdb) |	293508102
                       Number of splices: GT/AG |	294356267
                       Number of splices: GC/AG |	2074244
                       Number of splices: AT/AC |	226117
               Number of splices: Non-canonical |	1194108
                      Mismatch rate per base, % |	0.21%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.05
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.62
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9182980
             % of reads mapped to multiple loci |	3.10%
        Number of reads mapped to too many loci |	379905
             % of reads mapped to too many loci |	0.13%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2025425
                 % of reads unmapped: too short |	0.68%
                Number of reads unmapped: other |	325368
                     % of reads unmapped: other |	0.11%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%