Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/67430d1aac8046dbfab7def23b60ff/aih-tih-sc-96d0f6-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/5992b366f276e0e09b9eae75e993c0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/5992b366f276e0e09b9eae75e993c0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/d90f042c9633fdcecf25c29feffedc/aih-tih-sc-96d0f6-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-96d0f6-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai