File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/920d65fe27704ae74de775c9b2b5c7/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-d1f1a3-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/920d65fe27704ae74de775c9b2b5c7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/920d65fe27704ae74de775c9b2b5c7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/979ff5a21c226bf9b302a28f932e7a/aih-tih-sc-d1f1a3-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/1077ba6c049fdf24cf99bd2edb79b0/aih-tih-sc-d1f1a3-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 309715731
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-d1f1a3-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	309715731
Known Splicing Events:	306940377
Partial Novel Splicing Events:	1399651
Novel Splicing Events:	1256653
Filtered Splicing Events:	119050

Total splicing  Junctions:	552634
Known Splicing Junctions:	279414
Partial Novel Splicing Junctions:	147934
Novel Splicing Junctions:	125286

===================================================================
Create BED file ...
Create Interact file ...