Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/d6092b20eaa4d6cc2fbd7dddd89b5e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/de634d51f4f34041e0ee33073006da/aih-tih-sc-150e73-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/d6092b20eaa4d6cc2fbd7dddd89b5e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/12d7b6626e6fb09153ec96e776d354/aih-tih-sc-150e73-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 285417988
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-150e73-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	285417988
Known Splicing Events:	282193381
Partial Novel Splicing Events:	1638579
Novel Splicing Events:	1470915
Filtered Splicing Events:	115113

Total splicing  Junctions:	533576
Known Splicing Junctions:	275631
Partial Novel Splicing Junctions:	150400
Novel Splicing Junctions:	107545

===================================================================
Create BED file ...
Create Interact file ...