File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/f9d3f232119de298ff8c2173568d14/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-318819-R1_A23YTGFLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/682e371175457d4a901ea58b836e9c/aih-tih-sc-318819-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/f9d3f232119de298ff8c2173568d14/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/0e830bcbe878e515254df17d01003a/aih-tih-sc-318819-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/f9d3f232119de298ff8c2173568d14/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 214433886
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-318819-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	214433886
Known Splicing Events:	212185242
Partial Novel Splicing Events:	1204958
Novel Splicing Events:	925487
Filtered Splicing Events:	118199

Total splicing  Junctions:	399262
Known Splicing Junctions:	235338
Partial Novel Splicing Junctions:	91819
Novel Splicing Junctions:	72105

===================================================================
Create BED file ...
Create Interact file ...