File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/897d19cafee0cb45410048678faa4d/.command.log
Size
1.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-607ec3-R1_A23YTGFLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/c6c0b2febbd73b7df84b4eb6a19097/aih-tih-sc-607ec3-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/897d19cafee0cb45410048678faa4d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/897d19cafee0cb45410048678faa4d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/bb39e54d482ce5485069e8e286d156/aih-tih-sc-607ec3-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TLK2--LINC01347
starfusion
TVP23C--CDRT4
arriba

  0%|          | 0/2 [00:00<?, ?it/s]
Processing TLK2--LINC01347:   0%|          | 0/2 [00:00<?, ?it/s]
Processing TLK2--LINC01347:  50%|█████     | 1/2 [00:00<00:00,  9.07it/s]
Processing TVP23C--CDRT4:  50%|█████     | 1/2 [00:00<00:00,  9.07it/s]  
Processing TVP23C--CDRT4: 100%|██████████| 2/2 [00:00<00:00,  9.36it/s]
Processing TVP23C--CDRT4: 100%|██████████| 2/2 [00:00<00:00,  9.31it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory