Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/364e427b620efd77c6e4e4fcb853c4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/70bea7cb1748d7ad73d843c09c3f83/aih-tih-sc-01c779-R1_A23YTGFLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/364e427b620efd77c6e4e4fcb853c4/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory