Done.
-parsing GTF file: /tmp/nxf.V3v2TG3u3k/aih-tih-sc-377071-R1_A23YTGFLT4_1.gtf
* Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.V3v2TG3u3k/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.V3v2TG3u3k/aih-tih-sc-377071-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.V3v2TG3u3k/aih-tih-sc-377071-R1_A23YTGFLT4_1_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.V3v2TG3u3k/fi_workdir/aih-tih-sc-377071-R1_A23YTGFLT4_1.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.V3v2TG3u3k/fi_workdir/aih-tih-sc-377071-R1_A23YTGFLT4_1.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c'
* Running CMD: mv Aligned.sortedByCoord.out.bam aih-tih-sc-377071-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index aih-tih-sc-377071-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam
22:31:50 : INFO : Done.
-parsing GTF file: /tmp/nxf.V3v2TG3u3k/fi_workdir/aih-tih-sc-377071-R1_A23YTGFLT4_1.gtf
-parsing /tmp/nxf.V3v2TG3u3k/fi_workdir/aih-tih-sc-377071-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam
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[2280000] -done parsing /tmp/nxf.V3v2TG3u3k/fi_workdir/aih-tih-sc-377071-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam. Extracting junction info.
junction read elimination tally: $VAR1 = {
'num genes matched < 2' => 53,
'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 16,
' ** passed ** ' => 15911,
'excessive soft clipping' => 10723,
'num_hits: 7 != num_counted_on_fusion_contigs 5 ' => 15,
'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 60,
'low complexity anchor region' => 3,
'exons hit < 2' => 1,
'seq-similar region overlap' => 429,
'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 8,
'num_hits: 7 != num_counted_on_fusion_contigs 1 ' => 1,
'per_id < 96' => 6222,
'small anchor length' => 105,
'num_hits: 7 != num_counted_on_fusion_contigs 2 ' => 14,
'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 8,
'num_hits: 6 != num_counted_on_fusion_contigs 1 ' => 11,
'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 3
};
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.V3v2TG3u3k/fi_workdir/aih-tih-sc-377071-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
- counting read alignments among fusion contigs.
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[51000] -fusion SPANNING read extraction for scaff: DNAJA3--PRSS27
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[24000] -fusion SPANNING read extraction for scaff: DPH6--STK3
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[17000] -fusion SPANNING read extraction for scaff: EFL1--GOLGA6L11P
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-fusion SPANNING read extraction for scaff: GUCY1B2--NKAIN2
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[14000] -fusion SPANNING read extraction for scaff: PAICSP7--DUSP10
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[31000] -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA8
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[16000] -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGB7
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[25000] -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA12
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[29000] -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA10
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[31000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA8
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[19000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGB6
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[13000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGC5
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[12000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGC4
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[30000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGC3
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[24000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA11
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[23000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA9
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[16000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGB7
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[25000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA12
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[29000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA10
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[31000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA8
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[19000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB6
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[13000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC5
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[12000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC4
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[30000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC3
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[24000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA11
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[23000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA9
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[16000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB7
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[25000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA12
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[29000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA10
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[31000] -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGA8
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[19000] -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGB6
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[13000] -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGC5
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[12000] -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGC4
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[30000] -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGC3
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[24000] -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGA11
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[23000] -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGA9
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[16000] -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGB7
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[25000] -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGA12
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[29000] -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGA10
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[132000] -fusion SPANNING read extraction for scaff: PSMD11--ACLY
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[36000] -fusion SPANNING read extraction for scaff: SNTA1--EIF2S2
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[387000] -fusion SPANNING read extraction for scaff: STAT3--ACLY
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[24000] -fusion SPANNING read extraction for scaff: STK3--DPH6
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[9000] -fusion SPANNING read extraction for scaff: STON1--GTF2A1L
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[74000] -fusion SPANNING read extraction for scaff: STX16--NPEPL1
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[32000] -fusion SPANNING read extraction for scaff: TLK2--AC240565.1
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[15000] -fusion SPANNING read extraction for scaff: TUBB4BP8--DUSP10
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[34000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4
-filtered reads reasons: $VAR1 = {
'seq similar region alignment' => 113803,
'lacks exon overlap' => 9225
};
EM: Starting log likelihood: -10311.614712
EM: Round [1] log likelihood: -10302.018699
EM: Round [2] log likelihood: -10296.734628
EM: Round [3] log likelihood: -10292.366549
EM: Round [4] log likelihood: -10288.594556
EM: Round [5] log likelihood: -10285.253330
EM: Round [6] log likelihood: -10282.249813
EM: Round [7] log likelihood: -10279.527754
EM: Round [8] log likelihood: -10277.050285
EM: Round [9] log likelihood: -10274.790931
EM: Round [10] log likelihood: -10272.728893
EM: Round [11] log likelihood: -10270.846598
EM: Round [12] log likelihood: -10269.128457
EM: Round [13] log likelihood: -10267.560261
EM: Round [14] log likelihood: -10266.128899
EM: Round [15] log likelihood: -10264.822234
EM: Round [16] log likelihood: -10263.629051
EM: Round [17] log likelihood: -10262.539019
EM: Round [18] log likelihood: -10261.542658
EM: Round [19] log likelihood: -10260.631309
EM: Round [20] log likelihood: -10259.797083
EM: Round [21] log likelihood: -10259.032817
EM: Round [22] log likelihood: -10258.332019
EM: Round [23] log likelihood: -10257.688815
EM: Round [24] log likelihood: -10257.097898
EM: Round [25] log likelihood: -10256.554477
EM: Round [26] log likelihood: -10256.054226
EM: Round [27] log likelihood: -10255.593241
EM: Round [28] log likelihood: -10255.167999
EM: Round [29] log likelihood: -10254.775319
EM: Round [30] log likelihood: -10254.412330
EM: Round [31] log likelihood: -10254.076435
EM: Round [32] log likelihood: -10253.765289
EM: Round [33] log likelihood: -10253.476768
EM: Round [34] log likelihood: -10253.208951
EM: Round [35] log likelihood: -10252.960097
EM: Round [36] log likelihood: -10252.728628
EM: Round [37] log likelihood: -10252.513112
EM: Round [38] log likelihood: -10252.312248
EM: Round [39] log likelihood: -10252.124856
EM: Round [40] log likelihood: -10251.949861
EM: Round [41] log likelihood: -10251.786285
EM: Round [42] log likelihood: -10251.633237
EM: Round [43] log likelihood: -10251.489906
EM: Round [44] log likelihood: -10251.355551
EM: Round [45] log likelihood: -10251.229495
EM: Round [46] log likelihood: -10251.111119
EM: Round [47] log likelihood: -10250.999859
EM: Round [48] log likelihood: -10250.895197
EM: Round [49] log likelihood: -10250.796658
EM: Round [50] log likelihood: -10250.703809
EM: Round [51] log likelihood: -10250.616249
EM: Round [52] log likelihood: -10250.533612
EM: Round [53] log likelihood: -10250.455562
EM: Round [54] log likelihood: -10250.381788
EM: Round [55] log likelihood: -10250.312005
EM: Round [56] log likelihood: -10250.245950
EM: Round [57] log likelihood: -10250.183380
EM: Round [58] log likelihood: -10250.124072
EM: Round [59] log likelihood: -10250.067818
EM: Round [60] log likelihood: -10250.014427
EM: Round [61] log likelihood: -10249.963722
EM: Round [62] log likelihood: -10249.915539
EM: Round [63] log likelihood: -10249.869726
EM: Round [64] log likelihood: -10249.826141
EM: Round [65] log likelihood: -10249.784654
EM: Round [66] log likelihood: -10249.745143
EM: Round [67] log likelihood: -10249.707495
EM: Round [68] log likelihood: -10249.671603
EM: Round [69] log likelihood: -10249.637370
EM: Round [70] log likelihood: -10249.604704
EM: Round [71] log likelihood: -10249.573520
EM: Round [72] log likelihood: -10249.543737
EM: Round [73] log likelihood: -10249.515280
EM: Round [74] log likelihood: -10249.488081
EM: Round [75] log likelihood: -10249.462073
EM: Round [76] log likelihood: -10249.437195
EM: Round [77] log likelihood: -10249.413389
EM: Round [78] log likelihood: -10249.390602
EM: Round [79] log likelihood: -10249.368782
EM: Round [80] log likelihood: -10249.347883
EM: Round [81] log likelihood: -10249.327859
EM: Round [82] log likelihood: -10249.308667
EM: Round [83] log likelihood: -10249.290268
EM: Round [84] log likelihood: -10249.272625
EM: Round [85] log likelihood: -10249.255702
EM: Round [86] log likelihood: -10249.239466
EM: Round [87] log likelihood: -10249.223885
EM: Round [88] log likelihood: -10249.208928
EM: Round [89] log likelihood: -10249.194569
EM: Round [90] log likelihood: -10249.180780
EM: Round [91] log likelihood: -10249.167536
EM: Round [92] log likelihood: -10249.154812
EM: Round [93] log likelihood: -10249.142587
EM: Round [94] log likelihood: -10249.130838
EM: Round [95] log likelihood: -10249.119545
EM: Round [96] log likelihood: -10249.108688
EM: Round [97] log likelihood: -10249.098249
EM: Round [98] log likelihood: -10249.088210
EM: Round [99] log likelihood: -10249.078555
EM: Round [100] log likelihood: -10249.069267
EM: Round [101] log likelihood: -10249.060332
EM: Round [102] log likelihood: -10249.051734
EM: Round [103] log likelihood: -10249.043460
EM: Round [104] log likelihood: -10249.035497
EM: Round [105] log likelihood: -10249.027833
EM: Round [106] log likelihood: -10249.020454
EM: Round [107] log likelihood: -10249.013350
EM: Round [108] log likelihood: -10249.006510
EM: Round [109] log likelihood: -10248.999924
EM: Round [110] log likelihood: -10248.993580
EM: Round [111] log likelihood: -10248.987471
EM: Round [112] log likelihood: -10248.981586
EM: Round [113] log likelihood: -10248.975917
EM: Round [114] log likelihood: -10248.970456
EM: Round [115] log likelihood: -10248.965194
EM: Round [116] log likelihood: -10248.960124
EM: Round [117] log likelihood: -10248.955238
EM: Round [118] log likelihood: -10248.950530
EM: Round [119] log likelihood: -10248.945993
EM: Round [120] log likelihood: -10248.941619
EM: Round [121] log likelihood: -10248.937404
EM: Round [122] log likelihood: -10248.933340
EM: Round [123] log likelihood: -10248.929423
EM: Round [124] log likelihood: -10248.925647
EM: Round [125] log likelihood: -10248.922006
EM: Round [126] log likelihood: -10248.918495
EM: Round [127] log likelihood: -10248.915110
EM: Round [128] log likelihood: -10248.911846
EM: Round [129] log likelihood: -10248.908699
EM: Round [130] log likelihood: -10248.905663
EM: Round [131] log likelihood: -10248.902736
EM: Round [132] log likelihood: -10248.899913
EM: Round [133] log likelihood: -10248.897190
EM: Round [134] log likelihood: -10248.894563
EM: Round [135] log likelihood: -10248.892029
EM: Round [136] log likelihood: -10248.889585
EM: Round [137] log likelihood: -10248.887228
EM: Round [138] log likelihood: -10248.884953
EM: Round [139] log likelihood: -10248.882759
EM: Round [140] log likelihood: -10248.880642
EM: Round [141] log likelihood: -10248.878599
EM: Round [142] log likelihood: -10248.876628
EM: Round [143] log likelihood: -10248.874727
EM: Round [144] log likelihood: -10248.872892
EM: Round [145] log likelihood: -10248.871121
EM: Round [146] log likelihood: -10248.869413
EM: Round [147] log likelihood: -10248.867764
EM: Round [148] log likelihood: -10248.866173
EM: Round [149] log likelihood: -10248.864637
EM: Round [150] log likelihood: -10248.863155
EM: Round [151] log likelihood: -10248.861724
EM: Round [152] log likelihood: -10248.860344
EM: Round [153] log likelihood: -10248.859011
EM: Round [154] log likelihood: -10248.857725
EM: Round [155] log likelihood: -10248.856483
EM: Round [156] log likelihood: -10248.855285
EM: Round [157] log likelihood: -10248.854128
EM: Round [158] log likelihood: -10248.853011
EM: Round [159] log likelihood: -10248.851933
EM: Round [160] log likelihood: -10248.850892
EM: Round [161] log likelihood: -10248.849887
EM: Round [162] log likelihood: -10248.848917
EM: Round [163] log likelihood: -10248.847981
EM: Round [164] log likelihood: -10248.847077
EM: Round [165] log likelihood: -10248.846204
EM: Round [166] log likelihood: -10248.845361
EM: Round [167] log likelihood: -10248.844547
EM: Round [168] log likelihood: -10248.843761
EM: Round [169] log likelihood: -10248.843002
EM: Round [170] log likelihood: -10248.842269
EM: Round [171] log likelihood: -10248.841561
EM: Round [172] log likelihood: -10248.840878
EM: Round [173] log likelihood: -10248.840218
EM: Round [174] log likelihood: -10248.839581
EM: Round [175] log likelihood: -10248.838965
EM: Round [176] log likelihood: -10248.838371
EM: Round [177] log likelihood: -10248.837797
EM: Round [178] log likelihood: -10248.837243
EM: Round [179] log likelihood: -10248.836707
EM: Round [180] log likelihood: -10248.836190
EM: Round [181] log likelihood: -10248.835690
EM: Round [182] log likelihood: -10248.835208
EM: Round [183] log likelihood: -10248.834742
EM: Round [184] log likelihood: -10248.834292
EM: Round [185] log likelihood: -10248.833857
EM: Round [186] log likelihood: -10248.833437
EM: Round [187] log likelihood: -10248.833031
EM: Round [188] log likelihood: -10248.832639
EM: Round [189] log likelihood: -10248.832260
EM: Round [190] log likelihood: -10248.831894
EM: Round [191] log likelihood: -10248.831541
EM: Round [192] log likelihood: -10248.831200
EM: Round [193] log likelihood: -10248.830870
EM: Round [194] log likelihood: -10248.830551
EM: Round [195] log likelihood: -10248.830243
EM: Round [196] log likelihood: -10248.829946
EM: Round [197] log likelihood: -10248.829658
EM: Round [198] log likelihood: -10248.829380
EM: Round [199] log likelihood: -10248.829112
EM: Round [200] log likelihood: -10248.828853
EM: Round [201] log likelihood: -10248.828602
EM: Round [202] log likelihood: -10248.828360
EM: Round [203] log likelihood: -10248.828126
EM: Round [204] log likelihood: -10248.827900
EM: Round [205] log likelihood: -10248.827682
EM: Round [206] log likelihood: -10248.827470
EM: Round [207] log likelihood: -10248.827266
EM: Round [208] log likelihood: -10248.827069
EM: Round [209] log likelihood: -10248.826878
EM: Round [210] log likelihood: -10248.826694
EM: Round [211] log likelihood: -10248.826516
EM: Round [212] log likelihood: -10248.826344
EM: Round [213] log likelihood: -10248.826178
EM: Round [214] log likelihood: -10248.826017
EM: Round [215] log likelihood: -10248.825862
EM: Round [216] log likelihood: -10248.825711
EM: Round [217] log likelihood: -10248.825566
EM: Round [218] log likelihood: -10248.825426
EM: Round [219] log likelihood: -10248.825290
EM: Round [220] log likelihood: -10248.825159
EM: Round [221] log likelihood: -10248.825032
EM: Round [222] log likelihood: -10248.824910
EM: Round [223] log likelihood: -10248.824791
EM: Round [224] log likelihood: -10248.824677
EM: Round [225] log likelihood: -10248.824566
EM: Round [226] log likelihood: -10248.824459
EM: Round [227] log likelihood: -10248.824355
EM: Round [228] log likelihood: -10248.824255
EM: Round [229] log likelihood: -10248.824158
EM: Stopping iterations at round 229 due to insufficient improvement in likelihood.
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.V3v2TG3u3k/aih-tih-sc-377071-R1_A23YTGFLT4_1.consolidated.bam into /tmp/nxf.V3v2TG3u3k/aih-tih-sc-377071-R1_A23YTGFLT4_1.consolidated.bam.read_coords
CMD: touch /tmp/nxf.V3v2TG3u3k/aih-tih-sc-377071-R1_A23YTGFLT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.V3v2TG3u3k/aih-tih-sc-377071-R1_A23YTGFLT4_1.consolidated.bam.read_coords > /tmp/nxf.V3v2TG3u3k/aih-tih-sc-377071-R1_A23YTGFLT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.V3v2TG3u3k/aih-tih-sc-377071-R1_A23YTGFLT4_1.consolidated.bam.frag_coords > /tmp/nxf.V3v2TG3u3k/aih-tih-sc-377071-R1_A23YTGFLT4_1.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.V3v2TG3u3k/fi_workdir/aih-tih-sc-377071-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.V3v2TG3u3k/fi_workdir/aih-tih-sc-377071-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: cp /tmp/nxf.V3v2TG3u3k/fi_workdir/aih-tih-sc-377071-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.V3v2TG3u3k/aih-tih-sc-377071-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.V3v2TG3u3k/aih-tih-sc-377071-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -7930.959754
EM: Round [1] log likelihood: -7930.379453
EM: Round [2] log likelihood: -7930.377015
EM: Round [3] log likelihood: -7930.374933
EM: Round [4] log likelihood: -7930.372893
EM: Round [5] log likelihood: -7930.370893
EM: Round [6] log likelihood: -7930.368932
EM: Round [7] log likelihood: -7930.367010
EM: Round [8] log likelihood: -7930.365126
EM: Round [9] log likelihood: -7930.363278
EM: Round [10] log likelihood: -7930.361466
EM: Round [11] log likelihood: -7930.359689
EM: Round [12] log likelihood: -7930.357947
EM: Round [13] log likelihood: -7930.356239
EM: Round [14] log likelihood: -7930.354564
EM: Round [15] log likelihood: -7930.352921
EM: Round [16] log likelihood: -7930.351310
EM: Round [17] log likelihood: -7930.349730
EM: Round [18] log likelihood: -7930.348180
EM: Round [19] log likelihood: -7930.346660
EM: Round [20] log likelihood: -7930.345169
EM: Round [21] log likelihood: -7930.343707
EM: Round [22] log likelihood: -7930.342273
EM: Round [23] log likelihood: -7930.340866
EM: Round [24] log likelihood: -7930.339486
EM: Round [25] log likelihood: -7930.338132
EM: Round [26] log likelihood: -7930.336804
EM: Round [27] log likelihood: -7930.335501
EM: Round [28] log likelihood: -7930.334223
EM: Round [29] log likelihood: -7930.332969
EM: Round [30] log likelihood: -7930.331739
EM: Round [31] log likelihood: -7930.330532
EM: Round [32] log likelihood: -7930.329348
EM: Round [33] log likelihood: -7930.328186
EM: Round [34] log likelihood: -7930.327046
EM: Round [35] log likelihood: -7930.325927
EM: Round [36] log likelihood: -7930.324830
EM: Round [37] log likelihood: -7930.323753
EM: Round [38] log likelihood: -7930.322696
EM: Round [39] log likelihood: -7930.321659
EM: Round [40] log likelihood: -7930.320642
EM: Round [41] log likelihood: -7930.319643
EM: Round [42] log likelihood: -7930.318663
EM: Round [43] log likelihood: -7930.317701
EM: Round [44] log likelihood: -7930.316758
EM: Round [45] log likelihood: -7930.315832
EM: Round [46] log likelihood: -7930.314923
EM: Round [47] log likelihood: -7930.314031
EM: Round [48] log likelihood: -7930.313155
EM: Round [49] log likelihood: -7930.312296
EM: Round [50] log likelihood: -7930.311453
EM: Round [51] log likelihood: -7930.310625
EM: Round [52] log likelihood: -7930.309813
EM: Round [53] log likelihood: -7930.309015
EM: Round [54] log likelihood: -7930.308233
EM: Round [55] log likelihood: -7930.307465
EM: Round [56] log likelihood: -7930.306711
EM: Round [57] log likelihood: -7930.305971
EM: Round [58] log likelihood: -7930.305244
EM: Round [59] log likelihood: -7930.304531
EM: Round [60] log likelihood: -7930.303831
EM: Round [61] log likelihood: -7930.303144
EM: Round [62] log likelihood: -7930.302469
EM: Round [63] log likelihood: -7930.301807
EM: Round [64] log likelihood: -7930.301157
EM: Round [65] log likelihood: -7930.300519
EM: Round [66] log likelihood: -7930.299893
EM: Round [67] log likelihood: -7930.299278
EM: Round [68] log likelihood: -7930.298674
EM: Round [69] log likelihood: -7930.298082
EM: Round [70] log likelihood: -7930.297500
EM: Round [71] log likelihood: -7930.296929
EM: Round [72] log likelihood: -7930.296368
EM: Round [73] log likelihood: -7930.295818
EM: Round [74] log likelihood: -7930.295277
EM: Round [75] log likelihood: -7930.294747
EM: Round [76] log likelihood: -7930.294226
EM: Round [77] log likelihood: -7930.293714
EM: Round [78] log likelihood: -7930.293212
EM: Round [79] log likelihood: -7930.292719
EM: Round [80] log likelihood: -7930.292235
EM: Round [81] log likelihood: -7930.291760
EM: Round [82] log likelihood: -7930.291293
EM: Round [83] log likelihood: -7930.290835
EM: Round [84] log likelihood: -7930.290385
EM: Round [85] log likelihood: -7930.289944
EM: Round [86] log likelihood: -7930.289510
EM: Round [87] log likelihood: -7930.289084
EM: Round [88] log likelihood: -7930.288666
EM: Round [89] log likelihood: -7930.288255
EM: Round [90] log likelihood: -7930.287852
EM: Round [91] log likelihood: -7930.287456
EM: Round [92] log likelihood: -7930.287068
EM: Round [93] log likelihood: -7930.286686
EM: Round [94] log likelihood: -7930.286311
EM: Round [95] log likelihood: -7930.285944
EM: Round [96] log likelihood: -7930.285582
EM: Round [97] log likelihood: -7930.285227
EM: Round [98] log likelihood: -7930.284879
EM: Round [99] log likelihood: -7930.284537
EM: Round [100] log likelihood: -7930.284201
EM: Round [101] log likelihood: -7930.283871
EM: Round [102] log likelihood: -7930.283547
EM: Round [103] log likelihood: -7930.283229
EM: Round [104] log likelihood: -7930.282917
EM: Round [105] log likelihood: -7930.282610
EM: Round [106] log likelihood: -7930.282309
EM: Round [107] log likelihood: -7930.282013
EM: Round [108] log likelihood: -7930.281722
EM: Round [109] log likelihood: -7930.281437
EM: Round [110] log likelihood: -7930.281157
EM: Round [111] log likelihood: -7930.280882
EM: Round [112] log likelihood: -7930.280612
EM: Round [113] log likelihood: -7930.280346
EM: Round [114] log likelihood: -7930.280086
EM: Round [115] log likelihood: -7930.279830
EM: Round [116] log likelihood: -7930.279579
EM: Round [117] log likelihood: -7930.279332
EM: Round [118] log likelihood: -7930.279090
EM: Round [119] log likelihood: -7930.278852
EM: Round [120] log likelihood: -7930.278618
EM: Round [121] log likelihood: -7930.278388
EM: Round [122] log likelihood: -7930.278163
EM: Round [123] log likelihood: -7930.277941
EM: Round [124] log likelihood: -7930.277724
EM: Round [125] log likelihood: -7930.277511
EM: Round [126] log likelihood: -7930.277301
EM: Round [127] log likelihood: -7930.277095
EM: Round [128] log likelihood: -7930.276893
EM: Round [129] log likelihood: -7930.276694
EM: Round [130] log likelihood: -7930.276499
EM: Round [131] log likelihood: -7930.276307
EM: Round [132] log likelihood: -7930.276119
EM: Round [133] log likelihood: -7930.275934
EM: Round [134] log likelihood: -7930.275753
EM: Round [135] log likelihood: -7930.275575
EM: Round [136] log likelihood: -7930.275399
EM: Round [137] log likelihood: -7930.275228
EM: Round [138] log likelihood: -7930.275059
EM: Round [139] log likelihood: -7930.274893
EM: Round [140] log likelihood: -7930.274730
EM: Round [141] log likelihood: -7930.274570
EM: Round [142] log likelihood: -7930.274413
EM: Round [143] log likelihood: -7930.274259
EM: Round [144] log likelihood: -7930.274107
EM: Round [145] log likelihood: -7930.273958
EM: Round [146] log likelihood: -7930.273812
EM: Round [147] log likelihood: -7930.273668
EM: Round [148] log likelihood: -7930.273527
EM: Round [149] log likelihood: -7930.273389
EM: Round [150] log likelihood: -7930.273253
EM: Round [151] log likelihood: -7930.273119
EM: Round [152] log likelihood: -7930.272988
EM: Round [153] log likelihood: -7930.272859
EM: Round [154] log likelihood: -7930.272732
EM: Round [155] log likelihood: -7930.272608
EM: Round [156] log likelihood: -7930.272486
EM: Round [157] log likelihood: -7930.272366
EM: Round [158] log likelihood: -7930.272248
EM: Round [159] log likelihood: -7930.272132
EM: Round [160] log likelihood: -7930.272019
EM: Round [161] log likelihood: -7930.271907
EM: Round [162] log likelihood: -7930.271797
EM: Round [163] log likelihood: -7930.271690
EM: Round [164] log likelihood: -7930.271584
EM: Round [165] log likelihood: -7930.271480
EM: Round [166] log likelihood: -7930.271378
EM: Round [167] log likelihood: -7930.271278
EM: Round [168] log likelihood: -7930.271179
EM: Stopping iterations at round 168 due to insufficient improvement in likelihood.
-total frags in /tmp/nxf.V3v2TG3u3k/aih-tih-sc-377071-R1_A23YTGFLT4_1_1.fastp.fastq.gz: 296584083
Warning - not locating file: /tmp/nxf.V3v2TG3u3k/aih-tih-sc-377071-R1_A23YTGFLT4_1.gmap_trinity_GG.fusions.gff3.bed
WARNING, no entry stored in dbm for [ENSG00000266869.2]
WARNING, no entry stored in dbm for [ENSG00000266869.2]
WARNING, no entry stored in dbm for [ENSG00000266869.2]
WARNING, no entry stored in dbm for [ENSG00000266869.2]
WARNING, no entry stored in dbm for [ENSG00000266869.2]
WARNING, no entry stored in dbm for [ENSG00000266869.2]
WARNING, no entry stored in dbm for [ENSG00000266869.2]
WARNING, no entry stored in dbm for [ENSG00000266869.2]
WARNING, no entry stored in dbm for [ENSG00000266869.2]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286065.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000123201.14]
WARNING, no entry stored in dbm for [ENSG00000223698.3]
WARNING, no entry stored in dbm for [ENSG00000235979.9]
WARNING, no entry stored in dbm for [ENSG00000233048.1]
WARNING, no entry stored in dbm for [ENSG00000233048.1]
ls: cannot access 'IGV_inputs': No such file or directory