Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ctat_ref_annot.interval_list
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/279f78d9d424363205ed751303f1e4/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/279f78d9d424363205ed751303f1e4/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/143049f5632c6d24be757d65633aec/aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ref_annot.gtf.refflat
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/17a3d70b64a30cb7853f776d1e3e39/aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (6 inputs)
/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
Jun 03, 2026 8:16:56 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Wed Jun 03 20:16:56 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-377071-R1_A23YTGFLT4_1_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Wed Jun 03 20:16:56 GMT 2026] Executing as ?@nf-32279f78d9d424363205ed751303f1e4-3fe9e-85xhn on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
WARNING: BAM index file /tmp/nxf.XXXX6oDsC9/aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXX6oDsC9/aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
INFO 2026-06-03 20:16:58 CollectRnaSeqMetrics Loaded 58279 genes.
INFO 2026-06-03 20:17:09 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 10s. Last read position: chr1:1,046,661
INFO 2026-06-03 20:17:30 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 21s. Last read position: chr1:1,333,740
INFO 2026-06-03 20:17:38 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 7s. Last read position: chr1:1,624,846
INFO 2026-06-03 20:17:52 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 13s. Last read position: chr1:3,463,163
INFO 2026-06-03 20:18:06 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 14s. Last read position: chr1:7,970,892
INFO 2026-06-03 20:18:16 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 9s. Last read position: chr1:8,865,423
INFO 2026-06-03 20:18:30 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 14s. Last read position: chr1:10,404,202
INFO 2026-06-03 20:18:41 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 11s. Last read position: chr1:11,790,546
INFO 2026-06-03 20:19:01 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 20s. Last read position: chr1:15,409,942
INFO 2026-06-03 20:19:10 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 8s. Last read position: chr1:16,574,599
INFO 2026-06-03 20:19:18 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 8s. Last read position: chr1:18,745,240
INFO 2026-06-03 20:19:36 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 17s. Last read position: chr1:19,339,459
INFO 2026-06-03 20:19:51 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 15s. Last read position: chr1:21,560,739
INFO 2026-06-03 20:20:09 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 17s. Last read position: chr1:21,617,933
INFO 2026-06-03 20:20:24 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 15s. Last read position: chr1:21,850,457
INFO 2026-06-03 20:20:44 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 20s. Last read position: chr1:22,086,667
INFO 2026-06-03 20:20:50 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 5s. Last read position: chr1:23,310,908
INFO 2026-06-03 20:21:01 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 10s. Last read position: chr1:25,338,438
INFO 2026-06-03 20:21:14 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 13s. Last read position: chr1:26,775,038
INFO 2026-06-03 20:21:23 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 9s. Last read position: chr1:27,666,369
INFO 2026-06-03 20:21:30 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 6s. Last read position: chr1:28,203,761
INFO 2026-06-03 20:21:45 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 15s. Last read position: chr1:30,974,786
INFO 2026-06-03 20:22:02 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 17s. Last read position: chr1:32,207,572
INFO 2026-06-03 20:22:17 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 14s. Last read position: chr1:33,021,662
INFO 2026-06-03 20:22:27 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 10s. Last read position: chr1:35,906,927
INFO 2026-06-03 20:22:36 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 9s. Last read position: chr1:37,873,995
INFO 2026-06-03 20:23:53 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 76s. Last read position: chr1:39,561,624
INFO 2026-06-03 20:24:12 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 19s. Last read position: chr1:42,459,616
INFO 2026-06-03 20:24:33 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 20s. Last read position: chr1:43,591,124
INFO 2026-06-03 20:24:57 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 24s. Last read position: chr1:44,649,677
INFO 2026-06-03 20:25:10 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 13s. Last read position: chr1:46,184,237
INFO 2026-06-03 20:25:22 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 12s. Last read position: chr1:51,236,748
INFO 2026-06-03 20:25:44 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 21s. Last read position: chr1:54,200,829
INFO 2026-06-03 20:26:04 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 19s. Last read position: chr1:70,274,771
INFO 2026-06-03 20:26:19 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 14s. Last read position: chr1:90,939,131
INFO 2026-06-03 20:26:34 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 15s. Last read position: chr1:108,200,022
INFO 2026-06-03 20:26:51 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 17s. Last read position: chr1:112,694,535
INFO 2026-06-03 20:27:06 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 14s. Last read position: chr1:117,118,227
INFO 2026-06-03 20:27:16 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 10s. Last read position: chr1:119,949,044
INFO 2026-06-03 20:27:26 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 10s. Last read position: chr1:121,564,870
INFO 2026-06-03 20:27:32 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 6s. Last read position: chr1:146,128,224
INFO 2026-06-03 20:27:47 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 14s. Last read position: chr1:148,124,891
INFO 2026-06-03 20:28:00 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 13s. Last read position: chr1:149,455,391
INFO 2026-06-03 20:28:06 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 5s. Last read position: chr1:150,442,983
INFO 2026-06-03 20:28:20 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 14s. Last read position: chr1:150,997,250
INFO 2026-06-03 20:28:34 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 14s. Last read position: chr1:151,524,279
INFO 2026-06-03 20:28:43 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 8s. Last read position: chr1:153,772,398
INFO 2026-06-03 20:29:00 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 17s. Last read position: chr1:154,183,012
INFO 2026-06-03 20:29:34 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 33s. Last read position: chr1:154,945,688
INFO 2026-06-03 20:29:47 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 12s. Last read position: chr1:155,054,176
INFO 2026-06-03 20:30:17 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 29s. Last read position: chr1:155,187,759
INFO 2026-06-03 20:30:45 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 28s. Last read position: chr1:155,214,308
INFO 2026-06-03 20:31:12 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 26s. Last read position: chr1:155,764,856
INFO 2026-06-03 20:31:39 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 26s. Last read position: chr1:156,136,993
INFO 2026-06-03 20:31:58 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 19s. Last read position: chr1:156,729,069
INFO 2026-06-03 20:32:08 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 10s. Last read position: chr1:160,292,143
INFO 2026-06-03 20:32:38 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 29s. Last read position: chr1:161,323,644
INFO 2026-06-03 20:32:47 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 9s. Last read position: chr1:167,542,138
INFO 2026-06-03 20:32:52 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 5s. Last read position: chr1:169,111,419
INFO 2026-06-03 20:32:57 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 4s. Last read position: chr1:169,127,378
INFO 2026-06-03 20:33:02 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 5s. Last read position: chr1:169,611,500
INFO 2026-06-03 20:33:19 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 16s. Last read position: chr1:175,000,156
INFO 2026-06-03 20:33:28 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 9s. Last read position: chr1:181,089,037
INFO 2026-06-03 20:33:39 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 10s. Last read position: chr1:184,708,155
INFO 2026-06-03 20:33:49 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 10s. Last read position: chr1:192,579,142
INFO 2026-06-03 20:34:01 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 11s. Last read position: chr1:201,783,817
INFO 2026-06-03 20:34:17 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 16s. Last read position: chr1:203,216,888
INFO 2026-06-03 20:34:31 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 13s. Last read position: chr1:203,863,668
INFO 2026-06-03 20:34:41 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 10s. Last read position: chr1:206,930,358
INFO 2026-06-03 20:34:51 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 10s. Last read position: chr1:209,625,816
INFO 2026-06-03 20:35:00 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 9s. Last read position: chr1:220,102,129
INFO 2026-06-03 20:35:11 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 10s. Last read position: chr1:223,802,166
INFO 2026-06-03 20:35:22 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 11s. Last read position: chr1:226,064,360
INFO 2026-06-03 20:35:50 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 28s. Last read position: chr1:228,288,208
INFO 2026-06-03 20:36:10 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 20s. Last read position: chr1:232,445,705
INFO 2026-06-03 20:36:25 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 15s. Last read position: chr1:236,526,036
INFO 2026-06-03 20:36:48 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 22s. Last read position: chr1:244,864,130
INFO 2026-06-03 20:37:00 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 11s. Last read position: chr2:3,576,544
INFO 2026-06-03 20:37:13 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 13s. Last read position: chr2:11,618,447
INFO 2026-06-03 20:37:25 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 11s. Last read position: chr2:20,447,735
INFO 2026-06-03 20:37:40 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 15s. Last read position: chr2:26,278,677
INFO 2026-06-03 20:37:54 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 13s. Last read position: chr2:27,498,267
INFO 2026-06-03 20:38:05 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 10s. Last read position: chr2:32,439,580
INFO 2026-06-03 20:38:12 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 7s. Last read position: chr2:32,916,264
INFO 2026-06-03 20:38:22 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 9s. Last read position: chr2:32,916,351
INFO 2026-06-03 20:38:23 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-03 20:38:32 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 9s. Last read position: chr2:38,318,939
INFO 2026-06-03 20:38:49 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 16s. Last read position: chr2:43,787,181
INFO 2026-06-03 20:39:01 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 12s. Last read position: chr2:48,440,989
INFO 2026-06-03 20:39:21 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 19s. Last read position: chr2:55,317,594
INFO 2026-06-03 20:40:02 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:23:04s. Time for last 1,000,000: 41s. Last read position: chr2:63,857,843
INFO 2026-06-03 20:40:13 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:23:14s. Time for last 1,000,000: 10s. Last read position: chr2:69,829,840
INFO 2026-06-03 20:40:42 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:23:43s. Time for last 1,000,000: 29s. Last read position: chr2:73,946,773
INFO 2026-06-03 20:40:57 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:23:59s. Time for last 1,000,000: 15s. Last read position: chr2:85,134,023
INFO 2026-06-03 20:41:05 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:24:06s. Time for last 1,000,000: 7s. Last read position: chr2:85,661,495
INFO 2026-06-03 20:41:12 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:24:14s. Time for last 1,000,000: 7s. Last read position: chr2:85,663,823
INFO 2026-06-03 20:41:21 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:24:22s. Time for last 1,000,000: 8s. Last read position: chr2:85,666,626
INFO 2026-06-03 20:41:34 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:24:35s. Time for last 1,000,000: 12s. Last read position: chr2:86,765,989
INFO 2026-06-03 20:41:40 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:24:41s. Time for last 1,000,000: 5s. Last read position: chr2:96,253,886
INFO 2026-06-03 20:41:52 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:24:54s. Time for last 1,000,000: 12s. Last read position: chr2:99,360,263
INFO 2026-06-03 20:42:05 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:25:06s. Time for last 1,000,000: 12s. Last read position: chr2:108,730,850
INFO 2026-06-03 20:42:11 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:25:12s. Time for last 1,000,000: 6s. Last read position: chr2:109,986,949
INFO 2026-06-03 20:42:18 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:25:19s. Time for last 1,000,000: 7s. Last read position: chr2:112,646,911
INFO 2026-06-03 20:42:28 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:25:29s. Time for last 1,000,000: 10s. Last read position: chr2:121,387,141
INFO 2026-06-03 20:42:43 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:25:44s. Time for last 1,000,000: 14s. Last read position: chr2:134,458,079
INFO 2026-06-03 20:42:55 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:25:57s. Time for last 1,000,000: 12s. Last read position: chr2:151,455,128
INFO 2026-06-03 20:43:10 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:26:12s. Time for last 1,000,000: 14s. Last read position: chr2:159,875,538
INFO 2026-06-03 20:43:28 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:26:29s. Time for last 1,000,000: 17s. Last read position: chr2:170,965,975
INFO 2026-06-03 20:43:47 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:26:48s. Time for last 1,000,000: 19s. Last read position: chr2:178,547,320
INFO 2026-06-03 20:44:38 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:27:39s. Time for last 1,000,000: 50s. Last read position: chr2:188,529,178
INFO 2026-06-03 20:44:51 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:27:53s. Time for last 1,000,000: 13s. Last read position: chr2:189,854,478
INFO 2026-06-03 20:45:19 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:28:20s. Time for last 1,000,000: 27s. Last read position: chr2:197,497,232
INFO 2026-06-03 20:45:44 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:28:45s. Time for last 1,000,000: 24s. Last read position: chr2:203,180,393
INFO 2026-06-03 20:45:59 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:29:00s. Time for last 1,000,000: 14s. Last read position: chr2:210,075,609
INFO 2026-06-03 20:46:21 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:29:22s. Time for last 1,000,000: 21s. Last read position: chr2:210,602,260
INFO 2026-06-03 20:47:00 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:30:01s. Time for last 1,000,000: 39s. Last read position: chr2:210,660,555
INFO 2026-06-03 20:47:30 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:30:32s. Time for last 1,000,000: 30s. Last read position: chr2:215,364,930
INFO 2026-06-03 20:47:59 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:31:00s. Time for last 1,000,000: 28s. Last read position: chr2:215,372,180
INFO 2026-06-03 20:48:31 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:31:33s. Time for last 1,000,000: 32s. Last read position: chr2:215,376,613
INFO 2026-06-03 20:49:15 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:32:16s. Time for last 1,000,000: 43s. Last read position: chr2:215,384,111
INFO 2026-06-03 20:50:10 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:33:12s. Time for last 1,000,000: 55s. Last read position: chr2:215,397,146
INFO 2026-06-03 20:51:11 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:34:12s. Time for last 1,000,000: 60s. Last read position: chr2:215,407,300
INFO 2026-06-03 20:52:21 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:35:22s. Time for last 1,000,000: 70s. Last read position: chr2:215,419,368
INFO 2026-06-03 20:53:46 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:36:48s. Time for last 1,000,000: 85s. Last read position: chr2:215,430,809
INFO 2026-06-03 20:54:51 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:37:52s. Time for last 1,000,000: 64s. Last read position: chr2:216,660,641
INFO 2026-06-03 20:55:14 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:38:16s. Time for last 1,000,000: 23s. Last read position: chr2:218,277,410
INFO 2026-06-03 20:55:28 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:38:29s. Time for last 1,000,000: 13s. Last read position: chr2:219,485,358
INFO 2026-06-03 20:55:40 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:38:41s. Time for last 1,000,000: 12s. Last read position: chr2:227,472,448
INFO 2026-06-03 20:55:57 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:38:58s. Time for last 1,000,000: 16s. Last read position: chr2:230,449,697
INFO 2026-06-03 20:56:25 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:39:27s. Time for last 1,000,000: 28s. Last read position: chr2:233,691,759
INFO 2026-06-03 20:56:41 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:39:42s. Time for last 1,000,000: 15s. Last read position: chr2:237,366,806
INFO 2026-06-03 20:57:07 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:40:09s. Time for last 1,000,000: 26s. Last read position: chr2:240,573,117
INFO 2026-06-03 20:57:32 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:40:33s. Time for last 1,000,000: 24s. Last read position: chr3:4,316,465
INFO 2026-06-03 20:57:59 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:41:00s. Time for last 1,000,000: 27s. Last read position: chr3:10,028,642
INFO 2026-06-03 20:58:13 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:41:14s. Time for last 1,000,000: 14s. Last read position: chr3:13,626,467
INFO 2026-06-03 20:58:25 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:41:27s. Time for last 1,000,000: 12s. Last read position: chr3:22,382,118
INFO 2026-06-03 20:58:41 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:41:42s. Time for last 1,000,000: 15s. Last read position: chr3:33,826,543
INFO 2026-06-03 20:58:55 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:41:56s. Time for last 1,000,000: 14s. Last read position: chr3:40,427,358
INFO 2026-06-03 20:59:33 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:42:34s. Time for last 1,000,000: 37s. Last read position: chr3:45,007,445
INFO 2026-06-03 20:59:45 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:42:46s. Time for last 1,000,000: 11s. Last read position: chr3:46,995,793
INFO 2026-06-03 21:00:03 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:43:04s. Time for last 1,000,000: 18s. Last read position: chr3:47,855,356
INFO 2026-06-03 21:00:22 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:43:23s. Time for last 1,000,000: 18s. Last read position: chr3:48,694,864
INFO 2026-06-03 21:00:44 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:43:45s. Time for last 1,000,000: 22s. Last read position: chr3:49,124,481
INFO 2026-06-03 21:00:58 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:43:59s. Time for last 1,000,000: 13s. Last read position: chr3:49,727,445
INFO 2026-06-03 21:01:14 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:44:15s. Time for last 1,000,000: 16s. Last read position: chr3:50,367,854
INFO 2026-06-03 21:01:31 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:44:32s. Time for last 1,000,000: 16s. Last read position: chr3:52,261,379
INFO 2026-06-03 21:01:47 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:44:49s. Time for last 1,000,000: 16s. Last read position: chr3:53,230,508
INFO 2026-06-03 21:02:10 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:45:11s. Time for last 1,000,000: 22s. Last read position: chr3:58,141,913
INFO 2026-06-03 21:02:28 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:45:30s. Time for last 1,000,000: 18s. Last read position: chr3:70,959,320
INFO 2026-06-03 21:02:45 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:45:47s. Time for last 1,000,000: 17s. Last read position: chr3:100,649,672
INFO 2026-06-03 21:03:04 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:46:05s. Time for last 1,000,000: 18s. Last read position: chr3:111,991,413
INFO 2026-06-03 21:03:15 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:46:16s. Time for last 1,000,000: 10s. Last read position: chr3:121,669,284
INFO 2026-06-03 21:03:24 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:46:25s. Time for last 1,000,000: 9s. Last read position: chr3:123,116,234
INFO 2026-06-03 21:03:35 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:46:37s. Time for last 1,000,000: 11s. Last read position: chr3:128,060,507
INFO 2026-06-03 21:03:49 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:46:50s. Time for last 1,000,000: 13s. Last read position: chr3:129,573,725
INFO 2026-06-03 21:04:04 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:47:05s. Time for last 1,000,000: 15s. Last read position: chr3:136,293,824
INFO 2026-06-03 21:04:23 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:47:25s. Time for last 1,000,000: 19s. Last read position: chr3:149,048,083
INFO 2026-06-03 21:04:37 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:47:38s. Time for last 1,000,000: 13s. Last read position: chr3:150,567,657
INFO 2026-06-03 21:04:52 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:47:53s. Time for last 1,000,000: 15s. Last read position: chr3:169,131,474
INFO 2026-06-03 21:05:07 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:48:08s. Time for last 1,000,000: 15s. Last read position: chr3:180,968,094
INFO 2026-06-03 21:05:28 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:48:29s. Time for last 1,000,000: 20s. Last read position: chr3:184,321,355
INFO 2026-06-03 21:06:04 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:49:06s. Time for last 1,000,000: 36s. Last read position: chr3:186,787,878
INFO 2026-06-03 21:06:22 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:49:23s. Time for last 1,000,000: 17s. Last read position: chr3:194,431,751
INFO 2026-06-03 21:06:37 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:49:38s. Time for last 1,000,000: 14s. Last read position: chr3:195,779,709
INFO 2026-06-03 21:07:04 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:50:06s. Time for last 1,000,000: 27s. Last read position: chr3:195,783,666
INFO 2026-06-03 21:07:42 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:50:44s. Time for last 1,000,000: 37s. Last read position: chr3:195,789,061
INFO 2026-06-03 21:08:15 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:51:16s. Time for last 1,000,000: 32s. Last read position: chr4:677,894
INFO 2026-06-03 21:08:30 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:51:31s. Time for last 1,000,000: 14s. Last read position: chr4:1,731,171
INFO 2026-06-03 21:08:52 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:51:54s. Time for last 1,000,000: 22s. Last read position: chr4:3,217,935
INFO 2026-06-03 21:09:04 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:52:06s. Time for last 1,000,000: 11s. Last read position: chr4:7,868,626
INFO 2026-06-03 21:09:18 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:52:19s. Time for last 1,000,000: 13s. Last read position: chr4:23,828,462
INFO 2026-06-03 21:09:26 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:52:27s. Time for last 1,000,000: 7s. Last read position: chr4:25,666,213
INFO 2026-06-03 21:09:36 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:52:38s. Time for last 1,000,000: 10s. Last read position: chr4:25,674,320
INFO 2026-06-03 21:09:49 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:52:50s. Time for last 1,000,000: 12s. Last read position: chr4:25,678,599
INFO 2026-06-03 21:10:02 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:53:04s. Time for last 1,000,000: 13s. Last read position: chr4:40,219,287
INFO 2026-06-03 21:10:22 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:53:23s. Time for last 1,000,000: 19s. Last read position: chr4:48,885,513
INFO 2026-06-03 21:10:34 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:53:35s. Time for last 1,000,000: 12s. Last read position: chr4:57,031,322
INFO 2026-06-03 21:10:43 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:53:45s. Time for last 1,000,000: 9s. Last read position: chr4:75,013,116
INFO 2026-06-03 21:11:00 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:54:02s. Time for last 1,000,000: 17s. Last read position: chr4:82,827,513
INFO 2026-06-03 21:11:26 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:54:27s. Time for last 1,000,000: 25s. Last read position: chr4:88,750,285
INFO 2026-06-03 21:11:42 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:54:43s. Time for last 1,000,000: 15s. Last read position: chr4:108,824,214
INFO 2026-06-03 21:12:09 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:55:10s. Time for last 1,000,000: 27s. Last read position: chr4:122,343,458
INFO 2026-06-03 21:12:20 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:55:22s. Time for last 1,000,000: 11s. Last read position: chr4:143,438,342
INFO 2026-06-03 21:12:44 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:55:46s. Time for last 1,000,000: 23s. Last read position: chr4:152,976,595
INFO 2026-06-03 21:13:05 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:56:06s. Time for last 1,000,000: 20s. Last read position: chr4:168,878,057
INFO 2026-06-03 21:13:21 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:56:23s. Time for last 1,000,000: 16s. Last read position: chr4:185,646,712
INFO 2026-06-03 21:13:38 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:56:39s. Time for last 1,000,000: 16s. Last read position: chr5:1,474,620
INFO 2026-06-03 21:13:52 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:56:54s. Time for last 1,000,000: 14s. Last read position: chr5:14,286,987
INFO 2026-06-03 21:14:26 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:57:28s. Time for last 1,000,000: 33s. Last read position: chr5:14,498,101
INFO 2026-06-03 21:14:44 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:57:45s. Time for last 1,000,000: 17s. Last read position: chr5:36,271,293
INFO 2026-06-03 21:15:00 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:58:01s. Time for last 1,000,000: 15s. Last read position: chr5:50,794,878
INFO 2026-06-03 21:15:18 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:58:19s. Time for last 1,000,000: 18s. Last read position: chr5:64,788,898
INFO 2026-06-03 21:15:40 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:58:42s. Time for last 1,000,000: 22s. Last read position: chr5:69,567,102
INFO 2026-06-03 21:15:51 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:58:52s. Time for last 1,000,000: 10s. Last read position: chr5:73,857,696
INFO 2026-06-03 21:16:05 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:59:06s. Time for last 1,000,000: 13s. Last read position: chr5:82,822,907
INFO 2026-06-03 21:16:28 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:59:29s. Time for last 1,000,000: 23s. Last read position: chr5:94,050,809
INFO 2026-06-03 21:17:03 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 01:00:04s. Time for last 1,000,000: 34s. Last read position: chr5:109,337,242
INFO 2026-06-03 21:17:22 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 01:00:24s. Time for last 1,000,000: 19s. Last read position: chr5:126,561,096
INFO 2026-06-03 21:17:35 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 01:00:37s. Time for last 1,000,000: 13s. Last read position: chr5:134,200,478
INFO 2026-06-03 21:17:49 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 01:00:50s. Time for last 1,000,000: 13s. Last read position: chr5:138,557,890
INFO 2026-06-03 21:18:15 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 01:01:16s. Time for last 1,000,000: 25s. Last read position: chr5:140,542,180
INFO 2026-06-03 21:18:22 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 01:01:24s. Time for last 1,000,000: 7s. Last read position: chr5:141,209,808
INFO 2026-06-03 21:18:31 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 01:01:32s. Time for last 1,000,000: 8s. Last read position: chr5:141,621,467
INFO 2026-06-03 21:18:51 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 01:01:52s. Time for last 1,000,000: 20s. Last read position: chr5:147,399,197
INFO 2026-06-03 21:19:06 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 01:02:07s. Time for last 1,000,000: 14s. Last read position: chr5:150,135,719
INFO 2026-06-03 21:19:18 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 01:02:19s. Time for last 1,000,000: 12s. Last read position: chr5:150,402,611
INFO 2026-06-03 21:19:34 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 01:02:35s. Time for last 1,000,000: 15s. Last read position: chr5:150,405,162
INFO 2026-06-03 21:19:54 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 01:02:55s. Time for last 1,000,000: 20s. Last read position: chr5:150,446,801
INFO 2026-06-03 21:20:09 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 01:03:11s. Time for last 1,000,000: 15s. Last read position: chr5:151,799,224
INFO 2026-06-03 21:20:34 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 01:03:35s. Time for last 1,000,000: 24s. Last read position: chr5:160,259,470
INFO 2026-06-03 21:21:11 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 01:04:12s. Time for last 1,000,000: 37s. Last read position: chr5:171,400,197
INFO 2026-06-03 21:21:32 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 01:04:34s. Time for last 1,000,000: 21s. Last read position: chr5:176,905,295
INFO 2026-06-03 21:21:53 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 01:04:54s. Time for last 1,000,000: 20s. Last read position: chr5:178,206,746
INFO 2026-06-03 21:22:59 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 01:06:00s. Time for last 1,000,000: 65s. Last read position: chr5:179,820,958
INFO 2026-06-03 21:23:18 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 01:06:20s. Time for last 1,000,000: 19s. Last read position: chr5:179,833,140
INFO 2026-06-03 21:23:46 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 01:06:47s. Time for last 1,000,000: 27s. Last read position: chr5:181,224,419
INFO 2026-06-03 21:24:08 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 01:07:09s. Time for last 1,000,000: 21s. Last read position: chr6:7,229,140
INFO 2026-06-03 21:24:27 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 01:07:28s. Time for last 1,000,000: 19s. Last read position: chr6:11,190,892
INFO 2026-06-03 21:24:43 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 01:07:44s. Time for last 1,000,000: 16s. Last read position: chr6:24,718,578
INFO 2026-06-03 21:24:56 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 01:07:58s. Time for last 1,000,000: 13s. Last read position: chr6:29,889,352
INFO 2026-06-03 21:25:08 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 01:08:10s. Time for last 1,000,000: 12s. Last read position: chr6:30,700,405
INFO 2026-06-03 21:25:37 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 01:08:38s. Time for last 1,000,000: 28s. Last read position: chr6:31,271,602
INFO 2026-06-03 21:26:00 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 01:09:01s. Time for last 1,000,000: 22s. Last read position: chr6:31,644,170
INFO 2026-06-03 21:26:19 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 01:09:21s. Time for last 1,000,000: 19s. Last read position: chr6:31,863,709
INFO 2026-06-03 21:26:43 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 01:09:45s. Time for last 1,000,000: 23s. Last read position: chr6:31,982,121
INFO 2026-06-03 21:27:00 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 01:10:01s. Time for last 1,000,000: 16s. Last read position: chr6:32,027,400
INFO 2026-06-03 21:27:22 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 01:10:24s. Time for last 1,000,000: 22s. Last read position: chr6:32,517,701
INFO 2026-06-03 21:27:33 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 01:10:34s. Time for last 1,000,000: 10s. Last read position: chr6:32,976,095
INFO 2026-06-03 21:27:52 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 01:10:54s. Time for last 1,000,000: 19s. Last read position: chr6:33,313,354
INFO 2026-06-03 21:28:07 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 01:11:08s. Time for last 1,000,000: 14s. Last read position: chr6:34,773,445
INFO 2026-06-03 21:28:21 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 01:11:22s. Time for last 1,000,000: 13s. Last read position: chr6:37,174,029
INFO 2026-06-03 21:28:34 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 01:11:35s. Time for last 1,000,000: 13s. Last read position: chr6:42,650,298
INFO 2026-06-03 21:28:53 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 01:11:54s. Time for last 1,000,000: 19s. Last read position: chr6:43,622,046
INFO 2026-06-03 21:29:06 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 01:12:07s. Time for last 1,000,000: 12s. Last read position: chr6:46,871,868
INFO 2026-06-03 21:29:41 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 01:12:42s. Time for last 1,000,000: 34s. Last read position: chr6:56,639,518
INFO 2026-06-03 21:30:21 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 01:13:22s. Time for last 1,000,000: 40s. Last read position: chr6:75,237,896
INFO 2026-06-03 21:30:51 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 01:13:52s. Time for last 1,000,000: 30s. Last read position: chr6:85,619,314
INFO 2026-06-03 21:31:12 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 01:14:13s. Time for last 1,000,000: 20s. Last read position: chr6:100,679,647
INFO 2026-06-03 21:31:27 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 01:14:29s. Time for last 1,000,000: 15s. Last read position: chr6:111,387,765
INFO 2026-06-03 21:31:46 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 01:14:47s. Time for last 1,000,000: 18s. Last read position: chr6:122,432,016
INFO 2026-06-03 21:32:07 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 01:15:09s. Time for last 1,000,000: 21s. Last read position: chr6:134,172,731
INFO 2026-06-03 21:32:38 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 01:15:39s. Time for last 1,000,000: 30s. Last read position: chr6:139,374,431
INFO 2026-06-03 21:32:50 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 01:15:51s. Time for last 1,000,000: 12s. Last read position: chr6:150,831,146
INFO 2026-06-03 21:34:35 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 01:17:36s. Time for last 1,000,000: 105s. Last read position: chr6:153,282,412
INFO 2026-06-03 21:34:53 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 01:17:55s. Time for last 1,000,000: 18s. Last read position: chr6:158,769,335
INFO 2026-06-03 21:35:01 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 01:18:03s. Time for last 1,000,000: 8s. Last read position: chr6:159,684,976
INFO 2026-06-03 21:35:21 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 01:18:22s. Time for last 1,000,000: 19s. Last read position: chr6:166,320,148
INFO 2026-06-03 21:35:57 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 01:18:59s. Time for last 1,000,000: 36s. Last read position: chr7:193,217
INFO 2026-06-03 21:36:14 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 01:19:15s. Time for last 1,000,000: 16s. Last read position: chr7:2,632,091
INFO 2026-06-03 21:36:27 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 01:19:28s. Time for last 1,000,000: 13s. Last read position: chr7:5,528,019
INFO 2026-06-03 21:36:42 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 01:19:43s. Time for last 1,000,000: 14s. Last read position: chr7:6,469,750
INFO 2026-06-03 21:36:56 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 01:19:58s. Time for last 1,000,000: 14s. Last read position: chr7:23,260,624
INFO 2026-06-03 21:37:25 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 01:20:27s. Time for last 1,000,000: 29s. Last read position: chr7:32,974,635
INFO 2026-06-03 21:37:39 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 01:20:40s. Time for last 1,000,000: 13s. Last read position: chr7:44,082,327
INFO 2026-06-03 21:37:52 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 01:20:53s. Time for last 1,000,000: 12s. Last read position: chr7:45,083,647
INFO 2026-06-03 21:38:06 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 01:21:07s. Time for last 1,000,000: 14s. Last read position: chr7:56,064,320
INFO 2026-06-03 21:38:18 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 01:21:20s. Time for last 1,000,000: 12s. Last read position: chr7:72,948,727
INFO 2026-06-03 21:38:30 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 01:21:31s. Time for last 1,000,000: 11s. Last read position: chr7:74,519,548
INFO 2026-06-03 21:38:38 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 01:21:39s. Time for last 1,000,000: 8s. Last read position: chr7:75,548,991
INFO 2026-06-03 21:38:48 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 01:21:49s. Time for last 1,000,000: 10s. Last read position: chr7:77,059,322
INFO 2026-06-03 21:39:41 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 01:22:43s. Time for last 1,000,000: 53s. Last read position: chr7:92,294,892
INFO 2026-06-03 21:40:00 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 01:23:01s. Time for last 1,000,000: 18s. Last read position: chr7:94,552,409
INFO 2026-06-03 21:40:20 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 01:23:22s. Time for last 1,000,000: 20s. Last read position: chr7:99,425,607
INFO 2026-06-03 21:40:33 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 01:23:34s. Time for last 1,000,000: 12s. Last read position: chr7:100,607,984
INFO 2026-06-03 21:40:43 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 01:23:44s. Time for last 1,000,000: 9s. Last read position: chr7:101,212,905
INFO 2026-06-03 21:40:59 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 01:24:01s. Time for last 1,000,000: 16s. Last read position: chr7:105,112,991
INFO 2026-06-03 21:41:37 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 01:24:39s. Time for last 1,000,000: 37s. Last read position: chr7:112,456,953
INFO 2026-06-03 21:41:53 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 01:24:54s. Time for last 1,000,000: 15s. Last read position: chr7:127,704,928
INFO 2026-06-03 21:42:05 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 01:25:07s. Time for last 1,000,000: 12s. Last read position: chr7:130,127,426
INFO 2026-06-03 21:42:18 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 01:25:20s. Time for last 1,000,000: 12s. Last read position: chr7:135,685,429
INFO 2026-06-03 21:42:27 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 01:25:28s. Time for last 1,000,000: 8s. Last read position: chr7:139,829,334
INFO 2026-06-03 21:42:42 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 01:25:43s. Time for last 1,000,000: 14s. Last read position: chr7:144,157,594
INFO 2026-06-03 21:42:47 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 01:25:48s. Time for last 1,000,000: 5s. Last read position: chr7:149,474,534
INFO 2026-06-03 21:42:58 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 01:26:00s. Time for last 1,000,000: 11s. Last read position: chr7:151,064,231
INFO 2026-06-03 21:43:14 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 01:26:16s. Time for last 1,000,000: 16s. Last read position: chr7:152,162,523
INFO 2026-06-03 21:43:42 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 01:26:44s. Time for last 1,000,000: 27s. Last read position: chr8:6,501,326
INFO 2026-06-03 21:44:12 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 01:27:13s. Time for last 1,000,000: 29s. Last read position: chr8:16,168,515
INFO 2026-06-03 21:44:39 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 01:27:41s. Time for last 1,000,000: 27s. Last read position: chr8:18,071,307
INFO 2026-06-03 21:44:59 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 01:28:00s. Time for last 1,000,000: 19s. Last read position: chr8:22,619,235
INFO 2026-06-03 21:45:09 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 01:28:10s. Time for last 1,000,000: 10s. Last read position: chr8:25,292,029
INFO 2026-06-03 21:45:23 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 01:28:24s. Time for last 1,000,000: 13s. Last read position: chr8:28,555,847
INFO 2026-06-03 21:45:34 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 01:28:35s. Time for last 1,000,000: 10s. Last read position: chr8:37,797,484
INFO 2026-06-03 21:45:57 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 01:28:58s. Time for last 1,000,000: 23s. Last read position: chr8:39,023,213
INFO 2026-06-03 21:46:19 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 01:29:20s. Time for last 1,000,000: 21s. Last read position: chr8:47,817,485
INFO 2026-06-03 21:46:33 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 01:29:34s. Time for last 1,000,000: 14s. Last read position: chr8:61,518,104
INFO 2026-06-03 21:47:01 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 01:30:02s. Time for last 1,000,000: 27s. Last read position: chr8:70,121,303
INFO 2026-06-03 21:47:11 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 01:30:13s. Time for last 1,000,000: 10s. Last read position: chr8:89,953,584
INFO 2026-06-03 21:47:25 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 01:30:26s. Time for last 1,000,000: 13s. Last read position: chr8:100,151,822
INFO 2026-06-03 21:47:56 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 01:30:57s. Time for last 1,000,000: 30s. Last read position: chr8:103,420,983
INFO 2026-06-03 21:48:15 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 01:31:16s. Time for last 1,000,000: 19s. Last read position: chr8:123,207,496
INFO 2026-06-03 21:48:34 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 01:31:36s. Time for last 1,000,000: 19s. Last read position: chr8:133,284,251
INFO 2026-06-03 21:48:55 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 01:31:57s. Time for last 1,000,000: 20s. Last read position: chr8:143,581,229
INFO 2026-06-03 21:49:09 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 01:32:10s. Time for last 1,000,000: 13s. Last read position: chr8:143,858,522
INFO 2026-06-03 21:49:10 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 01:32:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,460
INFO 2026-06-03 21:49:11 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 01:32:13s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,878
INFO 2026-06-03 21:49:12 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 01:32:14s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,991
INFO 2026-06-03 21:49:20 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 01:32:22s. Time for last 1,000,000: 7s. Last read position: chr8:143,923,557
INFO 2026-06-03 21:49:43 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 01:32:45s. Time for last 1,000,000: 22s. Last read position: chr8:144,095,901
INFO 2026-06-03 21:49:57 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 01:32:58s. Time for last 1,000,000: 13s. Last read position: chr8:144,528,781
INFO 2026-06-03 21:50:16 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 01:33:18s. Time for last 1,000,000: 19s. Last read position: chr9:9,442,175
INFO 2026-06-03 21:50:33 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 01:33:35s. Time for last 1,000,000: 17s. Last read position: chr9:33,120,519
INFO 2026-06-03 21:50:49 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 01:33:50s. Time for last 1,000,000: 15s. Last read position: chr9:35,399,161
INFO 2026-06-03 21:50:59 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 01:34:01s. Time for last 1,000,000: 10s. Last read position: chr9:40,679,767
INFO 2026-06-03 21:51:11 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 01:34:13s. Time for last 1,000,000: 12s. Last read position: chr9:84,723,625
INFO 2026-06-03 21:51:27 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 01:34:29s. Time for last 1,000,000: 15s. Last read position: chr9:94,415,243
INFO 2026-06-03 21:51:37 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 01:34:38s. Time for last 1,000,000: 9s. Last read position: chr9:107,487,601
INFO 2026-06-03 21:51:52 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 01:34:53s. Time for last 1,000,000: 15s. Last read position: chr9:114,341,668
INFO 2026-06-03 21:52:08 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 01:35:10s. Time for last 1,000,000: 16s. Last read position: chr9:121,699,309
INFO 2026-06-03 21:52:24 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 01:35:26s. Time for last 1,000,000: 16s. Last read position: chr9:127,527,253
INFO 2026-06-03 21:52:38 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 01:35:40s. Time for last 1,000,000: 13s. Last read position: chr9:128,566,737
INFO 2026-06-03 21:52:58 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 01:35:59s. Time for last 1,000,000: 19s. Last read position: chr9:130,884,214
INFO 2026-06-03 21:53:11 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 01:36:13s. Time for last 1,000,000: 13s. Last read position: chr9:133,414,686
INFO 2026-06-03 21:53:24 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 01:36:25s. Time for last 1,000,000: 12s. Last read position: chr9:136,459,151
INFO 2026-06-03 21:53:44 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 01:36:45s. Time for last 1,000,000: 20s. Last read position: chr9:137,101,500
INFO 2026-06-03 21:53:59 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 01:37:00s. Time for last 1,000,000: 14s. Last read position: chr10:3,147,569
INFO 2026-06-03 21:54:12 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 01:37:13s. Time for last 1,000,000: 12s. Last read position: chr10:4,968,872
INFO 2026-06-03 21:54:17 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 01:37:18s. Time for last 1,000,000: 5s. Last read position: chr10:4,990,017
INFO 2026-06-03 21:54:26 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 01:37:27s. Time for last 1,000,000: 8s. Last read position: chr10:5,001,533
INFO 2026-06-03 21:54:37 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 01:37:39s. Time for last 1,000,000: 11s. Last read position: chr10:10,803,346
INFO 2026-06-03 21:54:50 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 01:37:51s. Time for last 1,000,000: 12s. Last read position: chr10:22,326,892
INFO 2026-06-03 21:55:10 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 01:38:11s. Time for last 1,000,000: 20s. Last read position: chr10:30,850,305
INFO 2026-06-03 21:55:31 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 01:38:33s. Time for last 1,000,000: 21s. Last read position: chr10:32,932,583
INFO 2026-06-03 21:55:43 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 01:38:45s. Time for last 1,000,000: 12s. Last read position: chr10:46,009,520
INFO 2026-06-03 21:55:53 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 01:38:54s. Time for last 1,000,000: 9s. Last read position: chr10:50,343,805
INFO 2026-06-03 21:56:05 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 01:39:06s. Time for last 1,000,000: 12s. Last read position: chr10:68,487,139
INFO 2026-06-03 21:56:19 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 01:39:20s. Time for last 1,000,000: 13s. Last read position: chr10:72,161,549
INFO 2026-06-03 21:56:32 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:39:34s. Time for last 1,000,000: 13s. Last read position: chr10:74,072,800
INFO 2026-06-03 21:56:54 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:39:55s. Time for last 1,000,000: 21s. Last read position: chr10:79,847,013
INFO 2026-06-03 21:57:01 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:40:03s. Time for last 1,000,000: 7s. Last read position: chr10:88,938,134
INFO 2026-06-03 21:57:18 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:40:19s. Time for last 1,000,000: 16s. Last read position: chr10:93,387,869
INFO 2026-06-03 21:57:35 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:40:36s. Time for last 1,000,000: 16s. Last read position: chr10:97,455,895
INFO 2026-06-03 21:57:46 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:40:47s. Time for last 1,000,000: 10s. Last read position: chr10:101,957,665
INFO 2026-06-03 21:58:19 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:41:20s. Time for last 1,000,000: 32s. Last read position: chr10:103,602,222
INFO 2026-06-03 21:58:32 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:41:33s. Time for last 1,000,000: 13s. Last read position: chr10:114,830,885
INFO 2026-06-03 21:58:42 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:41:43s. Time for last 1,000,000: 9s. Last read position: chr10:119,577,480
INFO 2026-06-03 21:59:07 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:42:08s. Time for last 1,000,000: 24s. Last read position: chr10:122,248,632
INFO 2026-06-03 21:59:34 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:42:35s. Time for last 1,000,000: 27s. Last read position: chr10:126,017,300
INFO 2026-06-03 21:59:46 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:42:47s. Time for last 1,000,000: 12s. Last read position: chr11:214,243
INFO 2026-06-03 22:00:00 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:43:01s. Time for last 1,000,000: 13s. Last read position: chr11:320,640
INFO 2026-06-03 22:00:15 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:43:17s. Time for last 1,000,000: 15s. Last read position: chr11:724,804
INFO 2026-06-03 22:00:32 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:43:33s. Time for last 1,000,000: 16s. Last read position: chr11:1,008,071
INFO 2026-06-03 22:00:40 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:43:41s. Time for last 1,000,000: 7s. Last read position: chr11:1,244,263
INFO 2026-06-03 22:00:46 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:43:47s. Time for last 1,000,000: 5s. Last read position: chr11:1,247,689
INFO 2026-06-03 22:00:53 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:43:54s. Time for last 1,000,000: 7s. Last read position: chr11:1,251,063
INFO 2026-06-03 22:01:04 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:44:05s. Time for last 1,000,000: 10s. Last read position: chr11:1,754,088
INFO 2026-06-03 22:01:24 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:44:26s. Time for last 1,000,000: 20s. Last read position: chr11:1,853,180
INFO 2026-06-03 22:01:42 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:44:43s. Time for last 1,000,000: 17s. Last read position: chr11:4,127,034
INFO 2026-06-03 22:01:59 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:45:01s. Time for last 1,000,000: 17s. Last read position: chr11:8,726,117
INFO 2026-06-03 22:02:25 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:45:27s. Time for last 1,000,000: 26s. Last read position: chr11:11,448,815
INFO 2026-06-03 22:02:39 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:45:41s. Time for last 1,000,000: 14s. Last read position: chr11:18,239,558
INFO 2026-06-03 22:02:44 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:45:45s. Time for last 1,000,000: 4s. Last read position: chr11:18,269,238
INFO 2026-06-03 22:02:56 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:45:57s. Time for last 1,000,000: 11s. Last read position: chr11:32,097,250
INFO 2026-06-03 22:03:09 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:46:10s. Time for last 1,000,000: 13s. Last read position: chr11:35,663,623
INFO 2026-06-03 22:03:18 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:46:20s. Time for last 1,000,000: 9s. Last read position: chr11:46,317,375
INFO 2026-06-03 22:03:36 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:46:38s. Time for last 1,000,000: 18s. Last read position: chr11:47,414,851
INFO 2026-06-03 22:03:47 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:46:49s. Time for last 1,000,000: 11s. Last read position: chr11:57,600,064
INFO 2026-06-03 22:04:12 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:47:14s. Time for last 1,000,000: 24s. Last read position: chr11:60,924,698
INFO 2026-06-03 22:04:36 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:47:37s. Time for last 1,000,000: 23s. Last read position: chr11:61,965,393
INFO 2026-06-03 22:04:43 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:47:44s. Time for last 1,000,000: 7s. Last read position: chr11:62,593,904
INFO 2026-06-03 22:05:02 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:48:03s. Time for last 1,000,000: 19s. Last read position: chr11:63,544,693
INFO 2026-06-03 22:05:13 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:48:14s. Time for last 1,000,000: 11s. Last read position: chr11:64,307,408
INFO 2026-06-03 22:05:26 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:48:27s. Time for last 1,000,000: 12s. Last read position: chr11:65,126,994
INFO 2026-06-03 22:05:42 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:48:44s. Time for last 1,000,000: 16s. Last read position: chr11:65,554,135
INFO 2026-06-03 22:05:56 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:48:58s. Time for last 1,000,000: 14s. Last read position: chr11:65,862,483
INFO 2026-06-03 22:06:10 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:49:11s. Time for last 1,000,000: 13s. Last read position: chr11:66,638,721
INFO 2026-06-03 22:06:27 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:49:29s. Time for last 1,000,000: 17s. Last read position: chr11:67,442,548
INFO 2026-06-03 22:06:39 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:49:41s. Time for last 1,000,000: 11s. Last read position: chr11:68,386,465
INFO 2026-06-03 22:06:55 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:49:56s. Time for last 1,000,000: 15s. Last read position: chr11:71,075,230
INFO 2026-06-03 22:07:21 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:50:23s. Time for last 1,000,000: 26s. Last read position: chr11:72,702,915
INFO 2026-06-03 22:07:40 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:50:41s. Time for last 1,000,000: 18s. Last read position: chr11:75,276,882
INFO 2026-06-03 22:07:56 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:50:57s. Time for last 1,000,000: 15s. Last read position: chr11:85,664,039
INFO 2026-06-03 22:08:16 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:51:17s. Time for last 1,000,000: 20s. Last read position: chr11:102,110,804
INFO 2026-06-03 22:08:31 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:51:33s. Time for last 1,000,000: 15s. Last read position: chr11:109,423,781
INFO 2026-06-03 22:08:42 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:51:44s. Time for last 1,000,000: 10s. Last read position: chr11:114,296,518
INFO 2026-06-03 22:08:55 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:51:57s. Time for last 1,000,000: 13s. Last read position: chr11:118,409,021
INFO 2026-06-03 22:09:10 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:52:12s. Time for last 1,000,000: 14s. Last read position: chr11:119,047,965
INFO 2026-06-03 22:09:30 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:52:31s. Time for last 1,000,000: 19s. Last read position: chr11:123,058,474
INFO 2026-06-03 22:09:44 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:52:46s. Time for last 1,000,000: 14s. Last read position: chr11:128,969,701
INFO 2026-06-03 22:09:58 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:52:59s. Time for last 1,000,000: 13s. Last read position: chr11:135,019,954
INFO 2026-06-03 22:10:19 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:53:21s. Time for last 1,000,000: 21s. Last read position: chr12:6,329,352
INFO 2026-06-03 22:10:54 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:53:56s. Time for last 1,000,000: 35s. Last read position: chr12:6,867,591
INFO 2026-06-03 22:11:08 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:54:09s. Time for last 1,000,000: 13s. Last read position: chr12:7,486,610
INFO 2026-06-03 22:11:18 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:54:20s. Time for last 1,000,000: 10s. Last read position: chr12:11,885,955
INFO 2026-06-03 22:11:32 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:54:33s. Time for last 1,000,000: 13s. Last read position: chr12:26,123,676
INFO 2026-06-03 22:11:48 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:54:49s. Time for last 1,000,000: 15s. Last read position: chr12:47,690,551
INFO 2026-06-03 22:12:05 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:55:06s. Time for last 1,000,000: 17s. Last read position: chr12:49,041,655
INFO 2026-06-03 22:12:19 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:55:20s. Time for last 1,000,000: 13s. Last read position: chr12:49,792,882
INFO 2026-06-03 22:12:35 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:55:36s. Time for last 1,000,000: 16s. Last read position: chr12:52,243,128
INFO 2026-06-03 22:12:56 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:55:57s. Time for last 1,000,000: 20s. Last read position: chr12:53,314,419
INFO 2026-06-03 22:13:19 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:56:21s. Time for last 1,000,000: 23s. Last read position: chr12:54,397,366
INFO 2026-06-03 22:13:34 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:56:36s. Time for last 1,000,000: 15s. Last read position: chr12:56,158,388
INFO 2026-06-03 22:13:56 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:56:57s. Time for last 1,000,000: 21s. Last read position: chr12:56,615,189
INFO 2026-06-03 22:14:16 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:57:17s. Time for last 1,000,000: 19s. Last read position: chr12:57,102,410
INFO 2026-06-03 22:14:39 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:57:41s. Time for last 1,000,000: 23s. Last read position: chr12:57,200,703
INFO 2026-06-03 22:15:03 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:58:04s. Time for last 1,000,000: 23s. Last read position: chr12:57,755,586
INFO 2026-06-03 22:15:15 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:58:17s. Time for last 1,000,000: 12s. Last read position: chr12:66,252,486
INFO 2026-06-03 22:15:31 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:58:32s. Time for last 1,000,000: 15s. Last read position: chr12:76,056,131
INFO 2026-06-03 22:15:46 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:58:48s. Time for last 1,000,000: 15s. Last read position: chr12:94,308,787
INFO 2026-06-03 22:16:01 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:59:02s. Time for last 1,000,000: 14s. Last read position: chr12:103,840,979
INFO 2026-06-03 22:16:38 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:59:39s. Time for last 1,000,000: 37s. Last read position: chr12:105,127,259
INFO 2026-06-03 22:16:51 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:59:52s. Time for last 1,000,000: 12s. Last read position: chr12:110,323,002
INFO 2026-06-03 22:17:10 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 02:00:11s. Time for last 1,000,000: 19s. Last read position: chr12:111,880,484
INFO 2026-06-03 22:17:33 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 02:00:35s. Time for last 1,000,000: 23s. Last read position: chr12:112,961,177
INFO 2026-06-03 22:18:00 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 02:01:02s. Time for last 1,000,000: 27s. Last read position: chr12:118,035,040
INFO 2026-06-03 22:18:14 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 02:01:15s. Time for last 1,000,000: 13s. Last read position: chr12:120,737,105
INFO 2026-06-03 22:18:29 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 02:01:30s. Time for last 1,000,000: 14s. Last read position: chr12:122,767,490
INFO 2026-06-03 22:18:45 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 02:01:46s. Time for last 1,000,000: 15s. Last read position: chr12:124,346,526
INFO 2026-06-03 22:19:02 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 02:02:04s. Time for last 1,000,000: 17s. Last read position: chr12:132,023,815
INFO 2026-06-03 22:19:15 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 02:02:16s. Time for last 1,000,000: 12s. Last read position: chr13:19,993,156
INFO 2026-06-03 22:19:25 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 02:02:26s. Time for last 1,000,000: 9s. Last read position: chr13:30,744,115
INFO 2026-06-03 22:19:40 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 02:02:42s. Time for last 1,000,000: 15s. Last read position: chr13:42,302,931
INFO 2026-06-03 22:19:53 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 02:02:54s. Time for last 1,000,000: 12s. Last read position: chr13:52,642,748
INFO 2026-06-03 22:20:11 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 02:03:13s. Time for last 1,000,000: 18s. Last read position: chr13:98,463,717
INFO 2026-06-03 22:20:26 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 02:03:27s. Time for last 1,000,000: 14s. Last read position: chr13:110,177,914
INFO 2026-06-03 22:20:45 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 02:03:46s. Time for last 1,000,000: 19s. Last read position: chr13:110,489,768
INFO 2026-06-03 22:21:00 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 02:04:01s. Time for last 1,000,000: 15s. Last read position: chr14:20,354,231
INFO 2026-06-03 22:21:21 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 02:04:22s. Time for last 1,000,000: 20s. Last read position: chr14:21,503,495
INFO 2026-06-03 22:21:34 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 02:04:35s. Time for last 1,000,000: 13s. Last read position: chr14:23,097,657
INFO 2026-06-03 22:21:50 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 02:04:51s. Time for last 1,000,000: 16s. Last read position: chr14:24,183,456
INFO 2026-06-03 22:22:16 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 02:05:18s. Time for last 1,000,000: 26s. Last read position: chr14:31,169,464
INFO 2026-06-03 22:22:31 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 02:05:33s. Time for last 1,000,000: 14s. Last read position: chr14:36,479,254
INFO 2026-06-03 22:22:40 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 02:05:42s. Time for last 1,000,000: 8s. Last read position: chr14:49,619,036
INFO 2026-06-03 22:22:51 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 02:05:52s. Time for last 1,000,000: 10s. Last read position: chr14:54,427,807
INFO 2026-06-03 22:23:08 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 02:06:09s. Time for last 1,000,000: 17s. Last read position: chr14:61,720,514
INFO 2026-06-03 22:23:50 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 02:06:51s. Time for last 1,000,000: 42s. Last read position: chr14:67,761,455
INFO 2026-06-03 22:24:07 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 02:07:08s. Time for last 1,000,000: 17s. Last read position: chr14:71,588,766
INFO 2026-06-03 22:24:23 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 02:07:24s. Time for last 1,000,000: 15s. Last read position: chr14:74,673,087
INFO 2026-06-03 22:24:35 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 02:07:36s. Time for last 1,000,000: 11s. Last read position: chr14:77,715,803
INFO 2026-06-03 22:24:50 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 02:07:51s. Time for last 1,000,000: 14s. Last read position: chr14:91,891,280
INFO 2026-06-03 22:25:01 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 02:08:03s. Time for last 1,000,000: 11s. Last read position: chr14:94,378,571
INFO 2026-06-03 22:25:16 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 02:08:17s. Time for last 1,000,000: 14s. Last read position: chr14:100,277,540
INFO 2026-06-03 22:27:41 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 02:10:43s. Time for last 1,000,000: 145s. Last read position: chr14:102,086,254
INFO 2026-06-03 22:28:07 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 02:11:09s. Time for last 1,000,000: 26s. Last read position: chr14:104,707,653
INFO 2026-06-03 22:28:24 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 02:11:26s. Time for last 1,000,000: 16s. Last read position: chr14:104,950,792
INFO 2026-06-03 22:28:35 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 02:11:36s. Time for last 1,000,000: 10s. Last read position: chr14:105,624,653
INFO 2026-06-03 22:28:37 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 02:11:38s. Time for last 1,000,000: 2s. Last read position: chr14:105,707,233
INFO 2026-06-03 22:28:39 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 02:11:41s. Time for last 1,000,000: 2s. Last read position: chr14:105,708,130
INFO 2026-06-03 22:28:41 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 02:11:43s. Time for last 1,000,000: 2s. Last read position: chr14:105,741,991
INFO 2026-06-03 22:28:44 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 02:11:45s. Time for last 1,000,000: 2s. Last read position: chr14:105,854,699
INFO 2026-06-03 22:29:14 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 02:12:15s. Time for last 1,000,000: 30s. Last read position: chr15:26,621,419
INFO 2026-06-03 22:29:24 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 02:12:25s. Time for last 1,000,000: 10s. Last read position: chr15:32,445,797
INFO 2026-06-03 22:29:31 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 02:12:32s. Time for last 1,000,000: 7s. Last read position: chr15:34,527,929
INFO 2026-06-03 22:29:39 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 02:12:40s. Time for last 1,000,000: 8s. Last read position: chr15:39,934,163
INFO 2026-06-03 22:29:51 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 02:12:53s. Time for last 1,000,000: 12s. Last read position: chr15:41,696,310
INFO 2026-06-03 22:30:08 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 02:13:09s. Time for last 1,000,000: 16s. Last read position: chr15:43,366,484
INFO 2026-06-03 22:30:17 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 02:13:18s. Time for last 1,000,000: 9s. Last read position: chr15:43,765,937
INFO 2026-06-03 22:30:30 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 02:13:31s. Time for last 1,000,000: 13s. Last read position: chr15:45,023,210
INFO 2026-06-03 22:30:46 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 02:13:47s. Time for last 1,000,000: 15s. Last read position: chr15:51,806,495
INFO 2026-06-03 22:31:03 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 02:14:04s. Time for last 1,000,000: 16s. Last read position: chr15:58,888,462
INFO 2026-06-03 22:31:31 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 02:14:32s. Time for last 1,000,000: 28s. Last read position: chr15:63,616,485
INFO 2026-06-03 22:31:43 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 02:14:44s. Time for last 1,000,000: 11s. Last read position: chr15:66,295,100
INFO 2026-06-03 22:31:58 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 02:14:59s. Time for last 1,000,000: 15s. Last read position: chr15:72,202,457
INFO 2026-06-03 22:32:14 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 02:15:16s. Time for last 1,000,000: 16s. Last read position: chr15:74,023,367
INFO 2026-06-03 22:32:33 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 02:15:34s. Time for last 1,000,000: 18s. Last read position: chr15:75,356,835
INFO 2026-06-03 22:32:48 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 02:15:49s. Time for last 1,000,000: 15s. Last read position: chr15:78,880,566
INFO 2026-06-03 22:33:06 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 02:16:08s. Time for last 1,000,000: 18s. Last read position: chr15:84,512,248
INFO 2026-06-03 22:33:23 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 02:16:24s. Time for last 1,000,000: 16s. Last read position: chr15:85,741,344
INFO 2026-06-03 22:33:36 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 02:16:37s. Time for last 1,000,000: 13s. Last read position: chr15:90,228,047
INFO 2026-06-03 22:33:59 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 02:17:00s. Time for last 1,000,000: 22s. Last read position: chr15:90,881,648
INFO 2026-06-03 22:34:30 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 02:17:31s. Time for last 1,000,000: 30s. Last read position: chr15:101,274,621
INFO 2026-06-03 22:34:45 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 02:17:46s. Time for last 1,000,000: 15s. Last read position: chr16:634,636
INFO 2026-06-03 22:35:04 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 02:18:06s. Time for last 1,000,000: 19s. Last read position: chr16:769,568
INFO 2026-06-03 22:35:21 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 02:18:23s. Time for last 1,000,000: 16s. Last read position: chr16:1,773,344
INFO 2026-06-03 22:36:16 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 02:19:17s. Time for last 1,000,000: 54s. Last read position: chr16:2,135,475
INFO 2026-06-03 22:36:35 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 02:19:36s. Time for last 1,000,000: 19s. Last read position: chr16:2,762,900
INFO 2026-06-03 22:36:59 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 02:20:00s. Time for last 1,000,000: 23s. Last read position: chr16:2,777,001
INFO 2026-06-03 22:37:16 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 02:20:18s. Time for last 1,000,000: 17s. Last read position: chr16:3,757,996
INFO 2026-06-03 22:37:34 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 02:20:36s. Time for last 1,000,000: 18s. Last read position: chr16:5,055,297
INFO 2026-06-03 22:37:51 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 02:20:52s. Time for last 1,000,000: 16s. Last read position: chr16:11,929,183
INFO 2026-06-03 22:38:08 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 02:21:10s. Time for last 1,000,000: 17s. Last read position: chr16:14,932,828
INFO 2026-06-03 22:38:38 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 02:21:40s. Time for last 1,000,000: 29s. Last read position: chr16:16,150,068
INFO 2026-06-03 22:38:47 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 02:21:49s. Time for last 1,000,000: 8s. Last read position: chr16:18,318,004
INFO 2026-06-03 22:38:57 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 02:21:58s. Time for last 1,000,000: 9s. Last read position: chr16:18,580,209
INFO 2026-06-03 22:39:13 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 02:22:14s. Time for last 1,000,000: 16s. Last read position: chr16:21,403,389
INFO 2026-06-03 22:39:19 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 02:22:20s. Time for last 1,000,000: 5s. Last read position: chr16:21,837,488
INFO 2026-06-03 22:39:25 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 02:22:26s. Time for last 1,000,000: 6s. Last read position: chr16:22,533,883
INFO 2026-06-03 22:39:35 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 02:22:36s. Time for last 1,000,000: 10s. Last read position: chr16:25,251,887
INFO 2026-06-03 22:39:50 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 02:22:51s. Time for last 1,000,000: 14s. Last read position: chr16:28,734,929
INFO 2026-06-03 22:40:01 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 02:23:03s. Time for last 1,000,000: 11s. Last read position: chr16:29,483,768
INFO 2026-06-03 22:40:09 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 02:23:10s. Time for last 1,000,000: 7s. Last read position: chr16:29,896,869
INFO 2026-06-03 22:40:26 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 02:23:27s. Time for last 1,000,000: 16s. Last read position: chr16:30,224,487
INFO 2026-06-03 22:40:32 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 02:23:33s. Time for last 1,000,000: 6s. Last read position: chr16:30,729,077
INFO 2026-06-03 22:40:43 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 02:23:44s. Time for last 1,000,000: 10s. Last read position: chr16:31,189,135
INFO 2026-06-03 22:40:57 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 02:23:58s. Time for last 1,000,000: 13s. Last read position: chr16:48,561,058
INFO 2026-06-03 22:41:11 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 02:24:12s. Time for last 1,000,000: 14s. Last read position: chr16:55,811,004
INFO 2026-06-03 22:41:37 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 02:24:39s. Time for last 1,000,000: 26s. Last read position: chr16:57,998,121
INFO 2026-06-03 22:41:54 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 02:24:55s. Time for last 1,000,000: 16s. Last read position: chr16:67,166,369
INFO 2026-06-03 22:42:12 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 02:25:13s. Time for last 1,000,000: 17s. Last read position: chr16:67,963,977
INFO 2026-06-03 22:42:26 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 02:25:28s. Time for last 1,000,000: 14s. Last read position: chr16:69,871,893
INFO 2026-06-03 22:42:51 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 02:25:52s. Time for last 1,000,000: 24s. Last read position: chr16:71,920,739
INFO 2026-06-03 22:43:07 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 02:26:08s. Time for last 1,000,000: 16s. Last read position: chr16:72,060,423
INFO 2026-06-03 22:43:20 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 02:26:22s. Time for last 1,000,000: 13s. Last read position: chr16:74,491,192
INFO 2026-06-03 22:43:33 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 02:26:34s. Time for last 1,000,000: 12s. Last read position: chr16:84,069,977
INFO 2026-06-03 22:43:47 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 02:26:49s. Time for last 1,000,000: 14s. Last read position: chr16:87,838,720
INFO 2026-06-03 22:43:58 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 02:26:59s. Time for last 1,000,000: 10s. Last read position: chr16:88,810,467
INFO 2026-06-03 22:44:29 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 02:27:31s. Time for last 1,000,000: 31s. Last read position: chr16:89,695,619
INFO 2026-06-03 22:44:55 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 02:27:56s. Time for last 1,000,000: 25s. Last read position: chr17:1,345,424
INFO 2026-06-03 22:45:17 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 02:28:18s. Time for last 1,000,000: 21s. Last read position: chr17:1,673,389
INFO 2026-06-03 22:45:34 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 02:28:36s. Time for last 1,000,000: 17s. Last read position: chr17:2,698,504
INFO 2026-06-03 22:45:52 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 02:28:54s. Time for last 1,000,000: 18s. Last read position: chr17:4,672,350
INFO 2026-06-03 22:46:07 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 02:29:08s. Time for last 1,000,000: 14s. Last read position: chr17:7,038,221
INFO 2026-06-03 22:46:23 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 02:29:24s. Time for last 1,000,000: 15s. Last read position: chr17:7,513,658
INFO 2026-06-03 22:46:37 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 02:29:38s. Time for last 1,000,000: 14s. Last read position: chr17:8,150,603
INFO 2026-06-03 22:46:56 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 02:29:57s. Time for last 1,000,000: 19s. Last read position: chr17:16,381,950
INFO 2026-06-03 22:47:06 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 02:30:07s. Time for last 1,000,000: 9s. Last read position: chr17:17,795,064
INFO 2026-06-03 22:47:20 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 02:30:22s. Time for last 1,000,000: 14s. Last read position: chr17:19,063,953
INFO 2026-06-03 22:47:45 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 02:30:47s. Time for last 1,000,000: 25s. Last read position: chr17:21,172,042
INFO 2026-06-03 22:48:00 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 02:31:02s. Time for last 1,000,000: 14s. Last read position: chr17:28,655,286
INFO 2026-06-03 22:48:15 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 02:31:17s. Time for last 1,000,000: 14s. Last read position: chr17:29,666,181
INFO 2026-06-03 22:48:36 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 02:31:37s. Time for last 1,000,000: 20s. Last read position: chr17:32,479,346
INFO 2026-06-03 22:48:48 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 02:31:50s. Time for last 1,000,000: 12s. Last read position: chr17:36,256,629
INFO 2026-06-03 22:49:01 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 02:32:02s. Time for last 1,000,000: 12s. Last read position: chr17:38,466,791
INFO 2026-06-03 22:49:12 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 02:32:13s. Time for last 1,000,000: 10s. Last read position: chr17:39,700,206
INFO 2026-06-03 22:49:42 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 02:32:43s. Time for last 1,000,000: 29s. Last read position: chr17:39,996,181
INFO 2026-06-03 22:49:55 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 02:32:56s. Time for last 1,000,000: 13s. Last read position: chr17:41,905,549
INFO 2026-06-03 22:50:41 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 02:33:42s. Time for last 1,000,000: 45s. Last read position: chr17:42,543,439
INFO 2026-06-03 22:50:53 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 02:33:55s. Time for last 1,000,000: 12s. Last read position: chr17:44,078,360
INFO 2026-06-03 22:51:11 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 02:34:12s. Time for last 1,000,000: 17s. Last read position: chr17:45,137,774
INFO 2026-06-03 22:51:21 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 02:34:23s. Time for last 1,000,000: 10s. Last read position: chr17:46,692,977
INFO 2026-06-03 22:51:41 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 02:34:42s. Time for last 1,000,000: 19s. Last read position: chr17:48,852,565
INFO 2026-06-03 22:51:51 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 02:34:53s. Time for last 1,000,000: 10s. Last read position: chr17:50,186,748
INFO 2026-06-03 22:52:01 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 02:35:02s. Time for last 1,000,000: 9s. Last read position: chr17:50,188,924
INFO 2026-06-03 22:52:12 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 02:35:13s. Time for last 1,000,000: 10s. Last read position: chr17:50,190,575
INFO 2026-06-03 22:52:24 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 02:35:25s. Time for last 1,000,000: 12s. Last read position: chr17:50,193,943
INFO 2026-06-03 22:52:37 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 02:35:38s. Time for last 1,000,000: 13s. Last read position: chr17:50,195,317
INFO 2026-06-03 22:52:51 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 02:35:53s. Time for last 1,000,000: 14s. Last read position: chr17:50,197,034
INFO 2026-06-03 22:53:09 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 02:36:10s. Time for last 1,000,000: 17s. Last read position: chr17:50,199,921
INFO 2026-06-03 22:53:27 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 02:36:29s. Time for last 1,000,000: 18s. Last read position: chr17:50,677,791
INFO 2026-06-03 22:53:43 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 02:36:44s. Time for last 1,000,000: 15s. Last read position: chr17:58,310,084
INFO 2026-06-03 22:53:57 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 02:36:59s. Time for last 1,000,000: 14s. Last read position: chr17:59,680,944
INFO 2026-06-03 22:54:18 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 02:37:19s. Time for last 1,000,000: 20s. Last read position: chr17:61,984,334
INFO 2026-06-03 22:54:34 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 02:37:35s. Time for last 1,000,000: 16s. Last read position: chr17:63,834,273
INFO 2026-06-03 22:54:50 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 02:37:51s. Time for last 1,000,000: 16s. Last read position: chr17:67,717,977
INFO 2026-06-03 22:55:11 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 02:38:12s. Time for last 1,000,000: 20s. Last read position: chr17:73,169,626
INFO 2026-06-03 22:55:24 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 02:38:25s. Time for last 1,000,000: 13s. Last read position: chr17:75,504,975
INFO 2026-06-03 22:55:44 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 02:38:46s. Time for last 1,000,000: 20s. Last read position: chr17:76,084,529
INFO 2026-06-03 22:56:05 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 02:39:06s. Time for last 1,000,000: 20s. Last read position: chr17:78,171,536
INFO 2026-06-03 22:56:17 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 02:39:18s. Time for last 1,000,000: 12s. Last read position: chr17:79,794,994
INFO 2026-06-03 22:56:33 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 02:39:34s. Time for last 1,000,000: 15s. Last read position: chr17:80,334,214
INFO 2026-06-03 22:57:02 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 02:40:03s. Time for last 1,000,000: 29s. Last read position: chr17:80,385,056
INFO 2026-06-03 22:57:19 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 02:40:20s. Time for last 1,000,000: 16s. Last read position: chr17:81,567,511
INFO 2026-06-03 22:58:20 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 02:41:21s. Time for last 1,000,000: 60s. Last read position: chr17:81,869,819
INFO 2026-06-03 22:58:37 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 02:41:38s. Time for last 1,000,000: 16s. Last read position: chr17:82,084,264
INFO 2026-06-03 22:58:54 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 02:41:55s. Time for last 1,000,000: 16s. Last read position: chr17:82,236,074
INFO 2026-06-03 22:59:13 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 02:42:15s. Time for last 1,000,000: 19s. Last read position: chr18:2,688,354
INFO 2026-06-03 22:59:27 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 02:42:29s. Time for last 1,000,000: 13s. Last read position: chr18:11,897,145
INFO 2026-06-03 22:59:44 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 02:42:45s. Time for last 1,000,000: 16s. Last read position: chr18:24,159,504
INFO 2026-06-03 22:59:59 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 02:43:00s. Time for last 1,000,000: 15s. Last read position: chr18:45,880,117
INFO 2026-06-03 23:00:14 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 02:43:16s. Time for last 1,000,000: 15s. Last read position: chr18:54,291,923
INFO 2026-06-03 23:00:56 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 02:43:58s. Time for last 1,000,000: 42s. Last read position: chr18:62,264,770
INFO 2026-06-03 23:01:09 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 02:44:10s. Time for last 1,000,000: 12s. Last read position: chr18:79,973,830
INFO 2026-06-03 23:01:24 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 02:44:25s. Time for last 1,000,000: 14s. Last read position: chr19:1,088,623
INFO 2026-06-03 23:01:39 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 02:44:40s. Time for last 1,000,000: 14s. Last read position: chr19:1,978,478
INFO 2026-06-03 23:01:50 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 02:44:51s. Time for last 1,000,000: 11s. Last read position: chr19:3,456,562
INFO 2026-06-03 23:02:00 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 02:45:02s. Time for last 1,000,000: 10s. Last read position: chr19:5,133,828
INFO 2026-06-03 23:02:13 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 02:45:15s. Time for last 1,000,000: 13s. Last read position: chr19:6,681,973
INFO 2026-06-03 23:02:28 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 02:45:29s. Time for last 1,000,000: 14s. Last read position: chr19:6,718,248
INFO 2026-06-03 23:02:41 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 02:45:42s. Time for last 1,000,000: 12s. Last read position: chr19:8,421,807
INFO 2026-06-03 23:02:58 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 02:45:59s. Time for last 1,000,000: 17s. Last read position: chr19:10,463,852
INFO 2026-06-03 23:03:29 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 02:46:31s. Time for last 1,000,000: 31s. Last read position: chr19:11,442,475
INFO 2026-06-03 23:03:43 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 02:46:44s. Time for last 1,000,000: 13s. Last read position: chr19:12,940,759
INFO 2026-06-03 23:03:55 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 02:46:56s. Time for last 1,000,000: 11s. Last read position: chr19:14,516,817
INFO 2026-06-03 23:04:06 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 02:47:07s. Time for last 1,000,000: 11s. Last read position: chr19:15,272,960
INFO 2026-06-03 23:04:23 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 02:47:25s. Time for last 1,000,000: 17s. Last read position: chr19:17,341,478
INFO 2026-06-03 23:04:33 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 02:47:34s. Time for last 1,000,000: 9s. Last read position: chr19:18,564,966
INFO 2026-06-03 23:04:44 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 02:47:45s. Time for last 1,000,000: 10s. Last read position: chr19:23,827,163
INFO 2026-06-03 23:04:57 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 02:47:59s. Time for last 1,000,000: 13s. Last read position: chr19:35,658,669
INFO 2026-06-03 23:05:10 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 02:48:11s. Time for last 1,000,000: 12s. Last read position: chr19:38,717,926
INFO 2026-06-03 23:05:23 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 02:48:24s. Time for last 1,000,000: 13s. Last read position: chr19:40,024,656
INFO 2026-06-03 23:05:46 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 02:48:48s. Time for last 1,000,000: 23s. Last read position: chr19:40,924,427
INFO 2026-06-03 23:05:59 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 02:49:00s. Time for last 1,000,000: 12s. Last read position: chr19:42,271,906
INFO 2026-06-03 23:06:10 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 02:49:11s. Time for last 1,000,000: 11s. Last read position: chr19:44,811,288
INFO 2026-06-03 23:06:19 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 02:49:21s. Time for last 1,000,000: 9s. Last read position: chr19:45,712,673
INFO 2026-06-03 23:06:30 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 02:49:31s. Time for last 1,000,000: 10s. Last read position: chr19:47,747,003
INFO 2026-06-03 23:06:42 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 02:49:43s. Time for last 1,000,000: 11s. Last read position: chr19:49,338,664
INFO 2026-06-03 23:06:56 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 02:49:57s. Time for last 1,000,000: 14s. Last read position: chr19:49,909,118
INFO 2026-06-03 23:07:12 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 02:50:13s. Time for last 1,000,000: 15s. Last read position: chr19:52,017,042
INFO 2026-06-03 23:07:23 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 02:50:24s. Time for last 1,000,000: 11s. Last read position: chr19:54,456,810
INFO 2026-06-03 23:07:33 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 02:50:34s. Time for last 1,000,000: 9s. Last read position: chr19:56,621,855
INFO 2026-06-03 23:07:42 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 02:50:43s. Time for last 1,000,000: 9s. Last read position: chr20:430,443
INFO 2026-06-03 23:07:55 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 02:50:56s. Time for last 1,000,000: 13s. Last read position: chr20:3,575,934
INFO 2026-06-03 23:08:05 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 02:51:06s. Time for last 1,000,000: 9s. Last read position: chr20:10,639,794
INFO 2026-06-03 23:08:22 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 02:51:23s. Time for last 1,000,000: 16s. Last read position: chr20:18,480,489
INFO 2026-06-03 23:08:31 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 02:51:32s. Time for last 1,000,000: 9s. Last read position: chr20:25,676,668
INFO 2026-06-03 23:08:42 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 02:51:43s. Time for last 1,000,000: 11s. Last read position: chr20:33,241,467
INFO 2026-06-03 23:08:57 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 02:51:59s. Time for last 1,000,000: 15s. Last read position: chr20:35,000,709
INFO 2026-06-03 23:09:18 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 02:52:19s. Time for last 1,000,000: 20s. Last read position: chr20:36,549,184
INFO 2026-06-03 23:09:28 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 02:52:29s. Time for last 1,000,000: 10s. Last read position: chr20:41,077,620
INFO 2026-06-03 23:09:39 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 02:52:40s. Time for last 1,000,000: 11s. Last read position: chr20:45,335,784
INFO 2026-06-03 23:10:10 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 02:53:11s. Time for last 1,000,000: 30s. Last read position: chr20:45,945,737
INFO 2026-06-03 23:10:26 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 02:53:28s. Time for last 1,000,000: 16s. Last read position: chr20:49,539,580
INFO 2026-06-03 23:10:33 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 02:53:34s. Time for last 1,000,000: 6s. Last read position: chr20:58,670,512
INFO 2026-06-03 23:11:02 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 02:54:03s. Time for last 1,000,000: 28s. Last read position: chr20:62,318,482
INFO 2026-06-03 23:11:13 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 02:54:14s. Time for last 1,000,000: 11s. Last read position: chr20:63,493,137
INFO 2026-06-03 23:11:22 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 02:54:23s. Time for last 1,000,000: 8s. Last read position: chr20:63,966,583
INFO 2026-06-03 23:11:25 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 02:54:26s. Time for last 1,000,000: 2s. Last read position: chr21:8,217,269
INFO 2026-06-03 23:11:26 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 02:54:27s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,290
INFO 2026-06-03 23:11:28 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 02:54:29s. Time for last 1,000,000: 2s. Last read position: chr21:17,793,460
INFO 2026-06-03 23:11:42 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 02:54:43s. Time for last 1,000,000: 13s. Last read position: chr21:33,567,143
INFO 2026-06-03 23:11:57 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 02:54:58s. Time for last 1,000,000: 14s. Last read position: chr21:36,231,053
INFO 2026-06-03 23:12:35 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 02:55:36s. Time for last 1,000,000: 38s. Last read position: chr21:42,848,240
INFO 2026-06-03 23:12:46 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 02:55:47s. Time for last 1,000,000: 10s. Last read position: chr21:45,468,342
INFO 2026-06-03 23:13:04 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 02:56:05s. Time for last 1,000,000: 17s. Last read position: chr21:46,346,819
INFO 2026-06-03 23:13:17 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 02:56:19s. Time for last 1,000,000: 13s. Last read position: chr22:20,426,198
INFO 2026-06-03 23:13:32 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 02:56:34s. Time for last 1,000,000: 14s. Last read position: chr22:23,314,666
INFO 2026-06-03 23:13:44 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 02:56:46s. Time for last 1,000,000: 12s. Last read position: chr22:28,795,207
INFO 2026-06-03 23:14:02 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 02:57:04s. Time for last 1,000,000: 18s. Last read position: chr22:30,287,444
INFO 2026-06-03 23:14:20 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 02:57:21s. Time for last 1,000,000: 17s. Last read position: chr22:36,253,187
INFO 2026-06-03 23:14:30 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 02:57:31s. Time for last 1,000,000: 9s. Last read position: chr22:37,751,786
INFO 2026-06-03 23:14:41 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 02:57:43s. Time for last 1,000,000: 11s. Last read position: chr22:40,265,370
INFO 2026-06-03 23:14:56 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 02:57:57s. Time for last 1,000,000: 14s. Last read position: chr22:42,213,802
INFO 2026-06-03 23:15:07 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 02:58:09s. Time for last 1,000,000: 11s. Last read position: chr22:46,793,619
INFO 2026-06-03 23:15:22 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 02:58:23s. Time for last 1,000,000: 14s. Last read position: chr22:50,503,429
INFO 2026-06-03 23:15:32 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 02:58:33s. Time for last 1,000,000: 9s. Last read position: chrX:2,488,670
INFO 2026-06-03 23:15:39 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 02:58:40s. Time for last 1,000,000: 7s. Last read position: chrX:15,518,160
INFO 2026-06-03 23:15:55 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 02:58:56s. Time for last 1,000,000: 15s. Last read position: chrX:19,536,281
INFO 2026-06-03 23:16:08 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 02:59:09s. Time for last 1,000,000: 12s. Last read position: chrX:40,071,048
INFO 2026-06-03 23:16:38 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 02:59:39s. Time for last 1,000,000: 30s. Last read position: chrX:43,732,728
INFO 2026-06-03 23:16:56 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 02:59:57s. Time for last 1,000,000: 17s. Last read position: chrX:47,212,429
INFO 2026-06-03 23:17:11 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 03:00:12s. Time for last 1,000,000: 15s. Last read position: chrX:48,957,148
INFO 2026-06-03 23:17:23 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 03:00:24s. Time for last 1,000,000: 11s. Last read position: chrX:53,413,304
INFO 2026-06-03 23:17:45 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 03:00:46s. Time for last 1,000,000: 22s. Last read position: chrX:64,190,537
INFO 2026-06-03 23:18:02 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 03:01:03s. Time for last 1,000,000: 16s. Last read position: chrX:71,459,175
INFO 2026-06-03 23:18:23 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 03:01:24s. Time for last 1,000,000: 20s. Last read position: chrX:77,989,604
INFO 2026-06-03 23:18:30 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 03:01:31s. Time for last 1,000,000: 6s. Last read position: chrX:103,676,971
INFO 2026-06-03 23:18:42 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 03:01:44s. Time for last 1,000,000: 12s. Last read position: chrX:119,786,723
INFO 2026-06-03 23:19:01 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 03:02:02s. Time for last 1,000,000: 18s. Last read position: chrX:129,798,512
INFO 2026-06-03 23:19:11 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 03:02:13s. Time for last 1,000,000: 10s. Last read position: chrX:150,645,760
INFO 2026-06-03 23:19:26 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 03:02:27s. Time for last 1,000,000: 14s. Last read position: chrX:153,941,608
INFO 2026-06-03 23:19:48 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 03:02:49s. Time for last 1,000,000: 22s. Last read position: chrX:154,361,477
INFO 2026-06-03 23:20:14 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 03:03:15s. Time for last 1,000,000: 25s. Last read position: chrX:154,534,035
INFO 2026-06-03 23:20:20 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 03:03:21s. Time for last 1,000,000: 6s. Last read position: GL000220.1:114,142
INFO 2026-06-03 23:20:21 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 03:03:22s. Time for last 1,000,000: 0s. Last read position: GL000220.1:159,442
INFO 2026-06-03 23:20:21 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 03:03:23s. Time for last 1,000,000: 0s. Last read position: KI270733.1:133,484
INFO 2026-06-03 23:20:22 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 03:03:24s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 23:20:23 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 03:03:25s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 23:20:24 SinglePassSamProgram Processed 637,000,000 records. Elapsed time: 03:03:26s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 23:20:25 SinglePassSamProgram Processed 638,000,000 records. Elapsed time: 03:03:26s. Time for last 1,000,000: 0s. Last read position: */*
[Wed Jun 03 23:20:27 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 183.52 minutes.
Runtime.totalMemory()=3022520320