Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/41dc1603a3b53dec7d83eb904019a5/.command.sh
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ctat_ref_annot.interval_list
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/de634d51f4f34041e0ee33073006da/aih-tih-sc-150e73-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/41dc1603a3b53dec7d83eb904019a5/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/12d7b6626e6fb09153ec96e776d354/aih-tih-sc-150e73-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ref_annot.gtf.refflat
==> STAGING COMPLETE (6 inputs)
/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
Jun 03, 2026 8:35:00 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Wed Jun 03 20:35:00 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT aih-tih-sc-150e73-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-150e73-R1_A23YTGFLT4_1_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Wed Jun 03 20:35:00 GMT 2026] Executing as ?@nf-6c41dc1603a3b53dec7d83eb904019a5-61bf1-gz98m on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
WARNING: BAM index file /tmp/nxf.XXXXkSrKZK/aih-tih-sc-150e73-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXXkSrKZK/aih-tih-sc-150e73-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
INFO 2026-06-03 20:35:02 CollectRnaSeqMetrics Loaded 58279 genes.
INFO 2026-06-03 20:35:12 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 9s. Last read position: chr1:1,049,635
INFO 2026-06-03 20:35:27 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 15s. Last read position: chr1:1,437,334
INFO 2026-06-03 20:35:36 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 9s. Last read position: chr1:2,306,139
INFO 2026-06-03 20:35:47 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 10s. Last read position: chr1:6,469,087
INFO 2026-06-03 20:35:55 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 8s. Last read position: chr1:9,718,841
INFO 2026-06-03 20:36:05 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 10s. Last read position: chr1:11,922,891
INFO 2026-06-03 20:36:17 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 11s. Last read position: chr1:15,728,694
INFO 2026-06-03 20:36:23 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 6s. Last read position: chr1:16,975,690
INFO 2026-06-03 20:36:37 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 14s. Last read position: chr1:19,251,829
INFO 2026-06-03 20:36:48 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 10s. Last read position: chr1:21,598,413
INFO 2026-06-03 20:37:02 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 14s. Last read position: chr1:22,490,371
INFO 2026-06-03 20:37:05 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr1:22,647,422
INFO 2026-06-03 20:37:09 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 4s. Last read position: chr1:23,863,262
INFO 2026-06-03 20:37:18 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 8s. Last read position: chr1:26,561,650
INFO 2026-06-03 20:37:26 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 7s. Last read position: chr1:27,476,808
INFO 2026-06-03 20:37:33 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 7s. Last read position: chr1:30,741,706
INFO 2026-06-03 20:37:44 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 11s. Last read position: chr1:32,228,520
INFO 2026-06-03 20:37:52 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 7s. Last read position: chr1:32,964,623
INFO 2026-06-03 20:37:58 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 6s. Last read position: chr1:36,156,423
INFO 2026-06-03 20:38:06 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 7s. Last read position: chr1:37,958,244
INFO 2026-06-03 20:38:53 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 47s. Last read position: chr1:40,076,890
INFO 2026-06-03 20:39:01 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 8s. Last read position: chr1:42,943,234
INFO 2026-06-03 20:39:19 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 18s. Last read position: chr1:43,947,611
INFO 2026-06-03 20:39:28 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 9s. Last read position: chr1:45,584,091
INFO 2026-06-03 20:39:38 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 9s. Last read position: chr1:47,778,482
INFO 2026-06-03 20:39:50 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 12s. Last read position: chr1:54,716,598
INFO 2026-06-03 20:40:02 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 12s. Last read position: chr1:64,844,757
INFO 2026-06-03 20:40:15 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 12s. Last read position: chr1:86,903,343
INFO 2026-06-03 20:40:20 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 5s. Last read position: chr1:94,515,154
INFO 2026-06-03 20:40:29 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 9s. Last read position: chr1:109,495,791
INFO 2026-06-03 20:40:41 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 11s. Last read position: chr1:112,694,786
INFO 2026-06-03 20:40:51 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 10s. Last read position: chr1:116,397,894
INFO 2026-06-03 20:41:00 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 8s. Last read position: chr1:119,950,826
INFO 2026-06-03 20:41:06 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 6s. Last read position: chr1:145,833,517
INFO 2026-06-03 20:41:14 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 8s. Last read position: chr1:148,117,635
INFO 2026-06-03 20:41:21 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 7s. Last read position: chr1:149,813,244
INFO 2026-06-03 20:41:22 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr1:149,886,272
INFO 2026-06-03 20:41:28 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 5s. Last read position: chr1:150,579,177
INFO 2026-06-03 20:41:37 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 8s. Last read position: chr1:151,364,449
INFO 2026-06-03 20:41:42 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 5s. Last read position: chr1:153,670,177
INFO 2026-06-03 20:41:51 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 8s. Last read position: chr1:154,170,427
INFO 2026-06-03 20:42:10 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 19s. Last read position: chr1:154,597,187
INFO 2026-06-03 20:42:32 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 22s. Last read position: chr1:155,172,773
INFO 2026-06-03 20:42:47 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 14s. Last read position: chr1:155,248,163
INFO 2026-06-03 20:43:06 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 19s. Last read position: chr1:155,950,891
INFO 2026-06-03 20:43:29 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 23s. Last read position: chr1:156,137,688
INFO 2026-06-03 20:43:42 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 12s. Last read position: chr1:156,743,803
INFO 2026-06-03 20:43:50 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 7s. Last read position: chr1:160,297,669
INFO 2026-06-03 20:44:09 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 19s. Last read position: chr1:161,510,865
INFO 2026-06-03 20:44:14 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 4s. Last read position: chr1:165,662,978
INFO 2026-06-03 20:44:18 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 4s. Last read position: chr1:169,131,342
INFO 2026-06-03 20:44:28 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 10s. Last read position: chr1:179,628,469
INFO 2026-06-03 20:44:35 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 7s. Last read position: chr1:183,630,575
INFO 2026-06-03 20:44:45 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 9s. Last read position: chr1:200,407,739
INFO 2026-06-03 20:44:55 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 9s. Last read position: chr1:203,076,385
INFO 2026-06-03 20:45:05 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 9s. Last read position: chr1:205,927,225
INFO 2026-06-03 20:45:09 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 4s. Last read position: chr1:207,061,967
INFO 2026-06-03 20:45:16 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 7s. Last read position: chr1:218,434,108
INFO 2026-06-03 20:45:24 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 7s. Last read position: chr1:225,868,024
INFO 2026-06-03 20:45:49 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 25s. Last read position: chr1:228,359,808
INFO 2026-06-03 20:45:58 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 9s. Last read position: chr1:234,608,913
INFO 2026-06-03 20:46:15 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 16s. Last read position: chr1:245,685,643
INFO 2026-06-03 20:46:23 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 8s. Last read position: chr2:10,785,009
INFO 2026-06-03 20:46:33 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 9s. Last read position: chr2:24,683,005
INFO 2026-06-03 20:46:42 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 9s. Last read position: chr2:27,222,319
INFO 2026-06-03 20:46:51 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 9s. Last read position: chr2:28,799,297
INFO 2026-06-03 20:46:58 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 6s. Last read position: chr2:32,916,258
INFO 2026-06-03 20:47:02 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 4s. Last read position: chr2:32,916,264
INFO 2026-06-03 20:47:07 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 4s. Last read position: chr2:32,916,406
INFO 2026-06-03 20:47:07 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,406
INFO 2026-06-03 20:47:14 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 6s. Last read position: chr2:39,736,796
INFO 2026-06-03 20:47:23 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 9s. Last read position: chr2:43,982,383
INFO 2026-06-03 20:47:33 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 10s. Last read position: chr2:54,647,172
INFO 2026-06-03 20:47:56 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 22s. Last read position: chr2:63,885,827
INFO 2026-06-03 20:48:14 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 18s. Last read position: chr2:70,088,447
INFO 2026-06-03 20:48:30 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 16s. Last read position: chr2:74,367,696
INFO 2026-06-03 20:48:39 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 9s. Last read position: chr2:85,322,720
INFO 2026-06-03 20:48:47 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 7s. Last read position: chr2:86,981,137
INFO 2026-06-03 20:48:54 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 7s. Last read position: chr2:96,326,907
INFO 2026-06-03 20:49:02 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 7s. Last read position: chr2:101,006,017
INFO 2026-06-03 20:49:10 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 7s. Last read position: chr2:108,766,916
INFO 2026-06-03 20:49:15 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 5s. Last read position: chr2:112,647,424
INFO 2026-06-03 20:49:25 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 9s. Last read position: chr2:127,505,538
INFO 2026-06-03 20:49:35 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 9s. Last read position: chr2:135,933,929
INFO 2026-06-03 20:49:48 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 13s. Last read position: chr2:159,349,260
INFO 2026-06-03 20:49:58 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 10s. Last read position: chr2:174,557,966
INFO 2026-06-03 20:50:38 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 40s. Last read position: chr2:182,743,634
INFO 2026-06-03 20:50:50 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 11s. Last read position: chr2:189,575,161
INFO 2026-06-03 20:51:11 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 21s. Last read position: chr2:197,498,674
INFO 2026-06-03 20:51:30 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 18s. Last read position: chr2:206,138,520
INFO 2026-06-03 20:51:43 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 13s. Last read position: chr2:215,375,344
INFO 2026-06-03 20:52:36 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 52s. Last read position: chr2:215,424,290
INFO 2026-06-03 20:53:12 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 36s. Last read position: chr2:218,265,898
INFO 2026-06-03 20:53:21 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 9s. Last read position: chr2:219,224,342
INFO 2026-06-03 20:53:31 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 10s. Last read position: chr2:229,795,233
INFO 2026-06-03 20:53:52 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 20s. Last read position: chr2:231,712,804
INFO 2026-06-03 20:54:06 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 14s. Last read position: chr2:237,366,716
INFO 2026-06-03 20:54:25 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 19s. Last read position: chr2:240,630,260
INFO 2026-06-03 20:54:47 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 21s. Last read position: chr3:4,983,623
INFO 2026-06-03 20:55:00 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 13s. Last read position: chr3:11,807,397
INFO 2026-06-03 20:55:10 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 9s. Last read position: chr3:15,436,538
INFO 2026-06-03 20:55:19 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 9s. Last read position: chr3:33,402,836
INFO 2026-06-03 20:55:29 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 10s. Last read position: chr3:39,412,285
INFO 2026-06-03 20:55:48 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 18s. Last read position: chr3:45,713,195
INFO 2026-06-03 20:56:00 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 12s. Last read position: chr3:47,407,893
INFO 2026-06-03 20:56:13 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 12s. Last read position: chr3:48,420,246
INFO 2026-06-03 20:56:39 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 26s. Last read position: chr3:48,599,169
INFO 2026-06-03 20:56:53 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 13s. Last read position: chr3:49,101,836
INFO 2026-06-03 20:57:05 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 12s. Last read position: chr3:49,697,171
INFO 2026-06-03 20:57:16 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 11s. Last read position: chr3:51,388,992
INFO 2026-06-03 20:57:26 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 9s. Last read position: chr3:52,502,206
INFO 2026-06-03 20:57:38 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:22:36s. Time for last 1,000,000: 12s. Last read position: chr3:53,242,149
INFO 2026-06-03 20:57:56 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:22:53s. Time for last 1,000,000: 17s. Last read position: chr3:62,203,269
INFO 2026-06-03 20:58:08 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:23:05s. Time for last 1,000,000: 11s. Last read position: chr3:100,320,956
INFO 2026-06-03 20:58:18 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:23:16s. Time for last 1,000,000: 10s. Last read position: chr3:119,458,139
INFO 2026-06-03 20:58:26 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:23:23s. Time for last 1,000,000: 7s. Last read position: chr3:124,395,186
INFO 2026-06-03 20:58:33 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:23:31s. Time for last 1,000,000: 7s. Last read position: chr3:128,622,326
INFO 2026-06-03 20:58:46 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:23:43s. Time for last 1,000,000: 12s. Last read position: chr3:132,660,651
INFO 2026-06-03 20:58:57 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:23:54s. Time for last 1,000,000: 10s. Last read position: chr3:146,521,884
INFO 2026-06-03 20:59:05 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:24:03s. Time for last 1,000,000: 8s. Last read position: chr3:160,431,818
INFO 2026-06-03 20:59:16 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:24:13s. Time for last 1,000,000: 10s. Last read position: chr3:183,747,680
INFO 2026-06-03 20:59:43 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:24:40s. Time for last 1,000,000: 26s. Last read position: chr3:184,824,730
INFO 2026-06-03 20:59:54 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:24:51s. Time for last 1,000,000: 11s. Last read position: chr3:194,136,978
INFO 2026-06-03 21:00:08 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:25:05s. Time for last 1,000,000: 13s. Last read position: chr3:195,780,543
INFO 2026-06-03 21:00:34 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:25:31s. Time for last 1,000,000: 25s. Last read position: chr3:195,786,277
INFO 2026-06-03 21:01:00 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:25:57s. Time for last 1,000,000: 26s. Last read position: chr3:197,830,784
INFO 2026-06-03 21:01:10 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:26:07s. Time for last 1,000,000: 9s. Last read position: chr4:1,731,281
INFO 2026-06-03 21:01:23 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:26:20s. Time for last 1,000,000: 12s. Last read position: chr4:2,662,977
INFO 2026-06-03 21:01:38 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:26:35s. Time for last 1,000,000: 15s. Last read position: chr4:7,025,128
INFO 2026-06-03 21:01:48 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:26:45s. Time for last 1,000,000: 10s. Last read position: chr4:24,527,979
INFO 2026-06-03 21:01:56 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:26:54s. Time for last 1,000,000: 8s. Last read position: chr4:41,013,835
INFO 2026-06-03 21:02:06 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:27:03s. Time for last 1,000,000: 9s. Last read position: chr4:69,761,670
INFO 2026-06-03 21:02:11 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:27:09s. Time for last 1,000,000: 5s. Last read position: chr4:73,998,263
INFO 2026-06-03 21:02:18 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:27:15s. Time for last 1,000,000: 6s. Last read position: chr4:76,756,737
INFO 2026-06-03 21:02:33 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:27:30s. Time for last 1,000,000: 14s. Last read position: chr4:87,892,100
INFO 2026-06-03 21:02:44 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:27:41s. Time for last 1,000,000: 10s. Last read position: chr4:113,214,244
INFO 2026-06-03 21:02:56 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:27:53s. Time for last 1,000,000: 12s. Last read position: chr4:145,141,419
INFO 2026-06-03 21:03:11 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:28:08s. Time for last 1,000,000: 15s. Last read position: chr4:173,247,992
INFO 2026-06-03 21:03:21 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:28:18s. Time for last 1,000,000: 9s. Last read position: chr5:665,178
INFO 2026-06-03 21:03:29 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:28:26s. Time for last 1,000,000: 8s. Last read position: chr5:10,748,176
INFO 2026-06-03 21:03:57 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:28:54s. Time for last 1,000,000: 27s. Last read position: chr5:15,500,599
INFO 2026-06-03 21:04:08 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:29:05s. Time for last 1,000,000: 11s. Last read position: chr5:39,153,448
INFO 2026-06-03 21:04:17 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:29:14s. Time for last 1,000,000: 9s. Last read position: chr5:56,923,222
INFO 2026-06-03 21:04:27 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:29:25s. Time for last 1,000,000: 10s. Last read position: chr5:73,498,460
INFO 2026-06-03 21:04:37 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:29:34s. Time for last 1,000,000: 9s. Last read position: chr5:83,540,051
INFO 2026-06-03 21:04:59 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:29:56s. Time for last 1,000,000: 21s. Last read position: chr5:110,761,345
INFO 2026-06-03 21:05:11 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:30:08s. Time for last 1,000,000: 12s. Last read position: chr5:128,084,345
INFO 2026-06-03 21:05:22 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:30:20s. Time for last 1,000,000: 11s. Last read position: chr5:134,205,975
INFO 2026-06-03 21:05:32 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:30:29s. Time for last 1,000,000: 9s. Last read position: chr5:138,419,015
INFO 2026-06-03 21:05:47 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:30:44s. Time for last 1,000,000: 14s. Last read position: chr5:140,510,023
INFO 2026-06-03 21:05:58 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:30:55s. Time for last 1,000,000: 10s. Last read position: chr5:141,644,335
INFO 2026-06-03 21:06:09 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:31:06s. Time for last 1,000,000: 11s. Last read position: chr5:147,824,625
INFO 2026-06-03 21:06:16 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:31:13s. Time for last 1,000,000: 6s. Last read position: chr5:150,135,790
INFO 2026-06-03 21:06:26 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:31:23s. Time for last 1,000,000: 9s. Last read position: chr5:150,402,217
INFO 2026-06-03 21:06:32 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:31:29s. Time for last 1,000,000: 6s. Last read position: chr5:150,402,611
INFO 2026-06-03 21:06:38 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:31:36s. Time for last 1,000,000: 6s. Last read position: chr5:150,404,721
INFO 2026-06-03 21:06:46 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:31:43s. Time for last 1,000,000: 7s. Last read position: chr5:150,405,129
INFO 2026-06-03 21:06:56 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:31:54s. Time for last 1,000,000: 10s. Last read position: chr5:150,406,902
INFO 2026-06-03 21:07:09 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:32:06s. Time for last 1,000,000: 12s. Last read position: chr5:150,412,625
INFO 2026-06-03 21:07:17 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:32:15s. Time for last 1,000,000: 8s. Last read position: chr5:151,674,666
INFO 2026-06-03 21:07:31 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:32:29s. Time for last 1,000,000: 13s. Last read position: chr5:160,602,637
INFO 2026-06-03 21:07:44 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:32:41s. Time for last 1,000,000: 12s. Last read position: chr5:171,391,786
INFO 2026-06-03 21:07:59 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:32:57s. Time for last 1,000,000: 15s. Last read position: chr5:176,347,549
INFO 2026-06-03 21:08:07 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:33:05s. Time for last 1,000,000: 7s. Last read position: chr5:177,436,432
INFO 2026-06-03 21:08:16 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:33:13s. Time for last 1,000,000: 8s. Last read position: chr5:179,207,681
INFO 2026-06-03 21:08:48 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:33:46s. Time for last 1,000,000: 32s. Last read position: chr5:179,811,671
INFO 2026-06-03 21:08:57 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:33:54s. Time for last 1,000,000: 8s. Last read position: chr5:179,836,479
INFO 2026-06-03 21:09:07 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:34:05s. Time for last 1,000,000: 10s. Last read position: chr5:181,260,577
INFO 2026-06-03 21:09:12 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:34:09s. Time for last 1,000,000: 4s. Last read position: chr6:4,892,148
INFO 2026-06-03 21:09:20 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:34:18s. Time for last 1,000,000: 8s. Last read position: chr6:8,015,635
INFO 2026-06-03 21:09:28 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:34:25s. Time for last 1,000,000: 7s. Last read position: chr6:21,594,928
INFO 2026-06-03 21:09:31 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:34:28s. Time for last 1,000,000: 3s. Last read position: chr6:26,199,676
INFO 2026-06-03 21:09:35 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:34:32s. Time for last 1,000,000: 3s. Last read position: chr6:27,808,321
INFO 2026-06-03 21:09:38 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:34:36s. Time for last 1,000,000: 3s. Last read position: chr6:29,556,108
INFO 2026-06-03 21:09:45 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:34:42s. Time for last 1,000,000: 6s. Last read position: chr6:29,943,267
INFO 2026-06-03 21:09:50 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:34:47s. Time for last 1,000,000: 5s. Last read position: chr6:30,490,350
INFO 2026-06-03 21:09:55 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:34:52s. Time for last 1,000,000: 5s. Last read position: chr6:30,888,749
INFO 2026-06-03 21:10:08 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:35:05s. Time for last 1,000,000: 13s. Last read position: chr6:31,271,607
INFO 2026-06-03 21:10:13 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:35:10s. Time for last 1,000,000: 4s. Last read position: chr6:31,536,594
INFO 2026-06-03 21:10:27 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:35:25s. Time for last 1,000,000: 14s. Last read position: chr6:31,649,241
INFO 2026-06-03 21:10:33 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:35:30s. Time for last 1,000,000: 5s. Last read position: chr6:31,816,643
INFO 2026-06-03 21:10:34 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:35:31s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,080
INFO 2026-06-03 21:10:43 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:35:40s. Time for last 1,000,000: 8s. Last read position: chr6:31,946,246
INFO 2026-06-03 21:10:51 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:35:48s. Time for last 1,000,000: 8s. Last read position: chr6:31,997,250
INFO 2026-06-03 21:11:05 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:36:02s. Time for last 1,000,000: 13s. Last read position: chr6:32,129,218
INFO 2026-06-03 21:11:07 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:36:05s. Time for last 1,000,000: 2s. Last read position: chr6:32,581,732
INFO 2026-06-03 21:11:13 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:36:10s. Time for last 1,000,000: 5s. Last read position: chr6:32,850,991
INFO 2026-06-03 21:11:22 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:36:19s. Time for last 1,000,000: 9s. Last read position: chr6:33,007,445
INFO 2026-06-03 21:11:27 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:36:24s. Time for last 1,000,000: 5s. Last read position: chr6:33,304,356
INFO 2026-06-03 21:11:35 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:36:32s. Time for last 1,000,000: 7s. Last read position: chr6:33,669,037
INFO 2026-06-03 21:11:42 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:36:40s. Time for last 1,000,000: 7s. Last read position: chr6:35,795,284
INFO 2026-06-03 21:11:49 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:36:46s. Time for last 1,000,000: 6s. Last read position: chr6:41,594,913
INFO 2026-06-03 21:11:57 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:36:54s. Time for last 1,000,000: 8s. Last read position: chr6:43,171,843
INFO 2026-06-03 21:12:08 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:37:05s. Time for last 1,000,000: 10s. Last read position: chr6:44,251,527
INFO 2026-06-03 21:12:12 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:37:10s. Time for last 1,000,000: 4s. Last read position: chr6:52,420,437
INFO 2026-06-03 21:12:40 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:37:37s. Time for last 1,000,000: 27s. Last read position: chr6:75,237,877
INFO 2026-06-03 21:12:53 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:37:50s. Time for last 1,000,000: 13s. Last read position: chr6:89,655,871
INFO 2026-06-03 21:13:01 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:37:58s. Time for last 1,000,000: 8s. Last read position: chr6:109,368,851
INFO 2026-06-03 21:13:10 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:38:08s. Time for last 1,000,000: 9s. Last read position: chr6:117,907,178
INFO 2026-06-03 21:13:27 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:38:24s. Time for last 1,000,000: 16s. Last read position: chr6:136,698,492
INFO 2026-06-03 21:13:34 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:38:31s. Time for last 1,000,000: 7s. Last read position: chr6:145,954,864
INFO 2026-06-03 21:13:54 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:38:51s. Time for last 1,000,000: 20s. Last read position: chr6:157,982,045
INFO 2026-06-03 21:14:00 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:38:57s. Time for last 1,000,000: 5s. Last read position: chr6:159,682,544
INFO 2026-06-03 21:14:12 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:39:09s. Time for last 1,000,000: 12s. Last read position: chr6:167,003,770
INFO 2026-06-03 21:14:31 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:39:28s. Time for last 1,000,000: 18s. Last read position: chr7:1,476,633
INFO 2026-06-03 21:14:39 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:39:36s. Time for last 1,000,000: 7s. Last read position: chr7:5,222,662
INFO 2026-06-03 21:14:47 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:39:45s. Time for last 1,000,000: 8s. Last read position: chr7:5,501,919
INFO 2026-06-03 21:14:57 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:39:55s. Time for last 1,000,000: 10s. Last read position: chr7:5,529,563
INFO 2026-06-03 21:15:05 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:40:02s. Time for last 1,000,000: 7s. Last read position: chr7:22,145,194
INFO 2026-06-03 21:15:25 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:40:23s. Time for last 1,000,000: 20s. Last read position: chr7:32,980,395
INFO 2026-06-03 21:15:33 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:40:31s. Time for last 1,000,000: 8s. Last read position: chr7:44,211,050
INFO 2026-06-03 21:15:44 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:40:42s. Time for last 1,000,000: 10s. Last read position: chr7:55,146,653
INFO 2026-06-03 21:15:53 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:40:50s. Time for last 1,000,000: 8s. Last read position: chr7:72,942,217
INFO 2026-06-03 21:15:57 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:40:55s. Time for last 1,000,000: 4s. Last read position: chr7:73,831,544
INFO 2026-06-03 21:16:06 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:41:03s. Time for last 1,000,000: 8s. Last read position: chr7:75,416,048
INFO 2026-06-03 21:16:12 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:41:09s. Time for last 1,000,000: 6s. Last read position: chr7:76,330,215
INFO 2026-06-03 21:16:19 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:41:16s. Time for last 1,000,000: 6s. Last read position: chr7:88,210,905
INFO 2026-06-03 21:16:59 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:41:57s. Time for last 1,000,000: 40s. Last read position: chr7:94,409,339
INFO 2026-06-03 21:17:14 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:42:11s. Time for last 1,000,000: 14s. Last read position: chr7:98,933,262
INFO 2026-06-03 21:17:31 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:42:28s. Time for last 1,000,000: 16s. Last read position: chr7:100,112,243
INFO 2026-06-03 21:17:39 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:42:36s. Time for last 1,000,000: 8s. Last read position: chr7:100,582,402
INFO 2026-06-03 21:17:48 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:42:45s. Time for last 1,000,000: 9s. Last read position: chr7:100,953,063
INFO 2026-06-03 21:17:57 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:42:54s. Time for last 1,000,000: 8s. Last read position: chr7:102,457,673
INFO 2026-06-03 21:18:02 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:42:59s. Time for last 1,000,000: 4s. Last read position: chr7:105,105,990
INFO 2026-06-03 21:18:29 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:43:27s. Time for last 1,000,000: 27s. Last read position: chr7:116,506,012
INFO 2026-06-03 21:18:40 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:43:37s. Time for last 1,000,000: 10s. Last read position: chr7:118,184,246
INFO 2026-06-03 21:18:50 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:43:47s. Time for last 1,000,000: 10s. Last read position: chr7:128,658,235
INFO 2026-06-03 21:18:58 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:43:55s. Time for last 1,000,000: 8s. Last read position: chr7:138,460,557
INFO 2026-06-03 21:19:10 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:44:07s. Time for last 1,000,000: 12s. Last read position: chr7:142,772,061
INFO 2026-06-03 21:19:15 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:44:12s. Time for last 1,000,000: 4s. Last read position: chr7:144,366,371
INFO 2026-06-03 21:19:21 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:44:18s. Time for last 1,000,000: 6s. Last read position: chr7:151,036,116
INFO 2026-06-03 21:19:43 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:44:40s. Time for last 1,000,000: 22s. Last read position: chr7:155,739,879
INFO 2026-06-03 21:20:01 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:44:58s. Time for last 1,000,000: 17s. Last read position: chr8:11,850,824
INFO 2026-06-03 21:20:34 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:45:31s. Time for last 1,000,000: 32s. Last read position: chr8:23,006,935
INFO 2026-06-03 21:20:49 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:45:46s. Time for last 1,000,000: 15s. Last read position: chr8:37,698,061
INFO 2026-06-03 21:21:15 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:46:13s. Time for last 1,000,000: 26s. Last read position: chr8:38,846,709
INFO 2026-06-03 21:21:41 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:46:38s. Time for last 1,000,000: 25s. Last read position: chr8:47,737,847
INFO 2026-06-03 21:22:06 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:47:04s. Time for last 1,000,000: 25s. Last read position: chr8:55,740,143
INFO 2026-06-03 21:22:27 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:47:25s. Time for last 1,000,000: 20s. Last read position: chr8:65,841,278
INFO 2026-06-03 21:22:48 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:47:45s. Time for last 1,000,000: 20s. Last read position: chr8:74,320,967
INFO 2026-06-03 21:23:03 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:48:00s. Time for last 1,000,000: 15s. Last read position: chr8:94,881,626
INFO 2026-06-03 21:23:20 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:48:18s. Time for last 1,000,000: 17s. Last read position: chr8:100,706,778
INFO 2026-06-03 21:24:19 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:49:16s. Time for last 1,000,000: 58s. Last read position: chr8:102,858,024
INFO 2026-06-03 21:24:38 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:49:35s. Time for last 1,000,000: 18s. Last read position: chr8:122,952,480
INFO 2026-06-03 21:24:55 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:49:52s. Time for last 1,000,000: 16s. Last read position: chr8:131,968,321
INFO 2026-06-03 21:25:30 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:50:27s. Time for last 1,000,000: 34s. Last read position: chr8:140,541,269
INFO 2026-06-03 21:25:44 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:50:41s. Time for last 1,000,000: 14s. Last read position: chr8:142,775,189
INFO 2026-06-03 21:25:58 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:50:56s. Time for last 1,000,000: 14s. Last read position: chr8:143,575,078
INFO 2026-06-03 21:26:31 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:51:28s. Time for last 1,000,000: 32s. Last read position: chr8:143,727,640
INFO 2026-06-03 21:26:49 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:51:46s. Time for last 1,000,000: 18s. Last read position: chr8:143,858,130
INFO 2026-06-03 21:26:50 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:51:48s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,596
INFO 2026-06-03 21:26:52 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:51:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,125
INFO 2026-06-03 21:26:54 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:51:51s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,923
INFO 2026-06-03 21:26:55 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:51:53s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,593
INFO 2026-06-03 21:26:57 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:51:54s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,135
INFO 2026-06-03 21:26:57 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:51:55s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,647
INFO 2026-06-03 21:26:58 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:51:56s. Time for last 1,000,000: 0s. Last read position: chr8:143,862,205
INFO 2026-06-03 21:27:00 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:51:57s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,793
INFO 2026-06-03 21:27:02 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:51:59s. Time for last 1,000,000: 2s. Last read position: chr8:143,863,304
INFO 2026-06-03 21:27:03 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:52:00s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,890
INFO 2026-06-03 21:27:04 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:52:01s. Time for last 1,000,000: 0s. Last read position: chr8:143,864,713
INFO 2026-06-03 21:27:05 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:52:03s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,389
INFO 2026-06-03 21:27:06 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:52:03s. Time for last 1,000,000: 0s. Last read position: chr8:143,865,926
INFO 2026-06-03 21:27:07 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:52:04s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,440
INFO 2026-06-03 21:27:10 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:52:07s. Time for last 1,000,000: 2s. Last read position: chr8:143,872,628
INFO 2026-06-03 21:27:21 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:52:18s. Time for last 1,000,000: 11s. Last read position: chr8:143,923,107
INFO 2026-06-03 21:28:01 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:52:58s. Time for last 1,000,000: 40s. Last read position: chr8:143,983,300
INFO 2026-06-03 21:28:16 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:53:13s. Time for last 1,000,000: 14s. Last read position: chr8:144,190,924
INFO 2026-06-03 21:28:43 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:53:40s. Time for last 1,000,000: 27s. Last read position: chr8:144,379,439
INFO 2026-06-03 21:28:59 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:53:56s. Time for last 1,000,000: 16s. Last read position: chr8:144,513,598
INFO 2026-06-03 21:29:18 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:54:16s. Time for last 1,000,000: 19s. Last read position: chr9:4,662,619
INFO 2026-06-03 21:29:38 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:54:36s. Time for last 1,000,000: 20s. Last read position: chr9:32,570,996
INFO 2026-06-03 21:29:57 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:54:54s. Time for last 1,000,000: 18s. Last read position: chr9:35,089,175
INFO 2026-06-03 21:30:12 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:55:09s. Time for last 1,000,000: 15s. Last read position: chr9:37,126,347
INFO 2026-06-03 21:30:31 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:55:28s. Time for last 1,000,000: 19s. Last read position: chr9:79,720,082
INFO 2026-06-03 21:30:50 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:55:47s. Time for last 1,000,000: 19s. Last read position: chr9:92,032,498
INFO 2026-06-03 21:31:05 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:56:03s. Time for last 1,000,000: 15s. Last read position: chr9:97,650,502
INFO 2026-06-03 21:31:17 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:56:15s. Time for last 1,000,000: 12s. Last read position: chr9:107,488,106
INFO 2026-06-03 21:31:42 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:56:39s. Time for last 1,000,000: 24s. Last read position: chr9:114,310,575
INFO 2026-06-03 21:31:56 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:56:53s. Time for last 1,000,000: 13s. Last read position: chr9:121,763,871
INFO 2026-06-03 21:32:08 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:57:06s. Time for last 1,000,000: 12s. Last read position: chr9:127,715,080
INFO 2026-06-03 21:32:24 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:57:21s. Time for last 1,000,000: 15s. Last read position: chr9:128,576,840
INFO 2026-06-03 21:32:47 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:57:44s. Time for last 1,000,000: 23s. Last read position: chr9:129,822,724
INFO 2026-06-03 21:32:57 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:57:54s. Time for last 1,000,000: 9s. Last read position: chr9:131,598,198
INFO 2026-06-03 21:33:09 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:58:06s. Time for last 1,000,000: 11s. Last read position: chr9:134,140,772
INFO 2026-06-03 21:33:23 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:58:20s. Time for last 1,000,000: 13s. Last read position: chr9:136,497,075
INFO 2026-06-03 21:33:47 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:58:44s. Time for last 1,000,000: 24s. Last read position: chr9:137,214,649
INFO 2026-06-03 21:34:01 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:58:58s. Time for last 1,000,000: 13s. Last read position: chr10:4,833,359
INFO 2026-06-03 21:34:11 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:59:08s. Time for last 1,000,000: 9s. Last read position: chr10:12,100,175
INFO 2026-06-03 21:34:27 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:59:25s. Time for last 1,000,000: 16s. Last read position: chr10:24,620,267
INFO 2026-06-03 21:34:46 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:59:43s. Time for last 1,000,000: 18s. Last read position: chr10:32,038,162
INFO 2026-06-03 21:34:59 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:59:56s. Time for last 1,000,000: 13s. Last read position: chr10:45,727,455
INFO 2026-06-03 21:35:05 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 01:00:02s. Time for last 1,000,000: 5s. Last read position: chr10:47,757,921
INFO 2026-06-03 21:35:14 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 01:00:11s. Time for last 1,000,000: 8s. Last read position: chr10:60,172,308
INFO 2026-06-03 21:35:25 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 01:00:22s. Time for last 1,000,000: 11s. Last read position: chr10:70,708,750
INFO 2026-06-03 21:35:36 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 01:00:33s. Time for last 1,000,000: 11s. Last read position: chr10:73,792,329
INFO 2026-06-03 21:35:58 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 01:00:55s. Time for last 1,000,000: 22s. Last read position: chr10:79,296,478
INFO 2026-06-03 21:36:04 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 01:01:01s. Time for last 1,000,000: 5s. Last read position: chr10:87,232,687
INFO 2026-06-03 21:36:13 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 01:01:10s. Time for last 1,000,000: 8s. Last read position: chr10:95,271,742
INFO 2026-06-03 21:36:25 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 01:01:22s. Time for last 1,000,000: 12s. Last read position: chr10:99,661,467
INFO 2026-06-03 21:36:44 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 01:01:42s. Time for last 1,000,000: 19s. Last read position: chr10:102,397,330
INFO 2026-06-03 21:36:54 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 01:01:51s. Time for last 1,000,000: 9s. Last read position: chr10:112,951,556
INFO 2026-06-03 21:37:02 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 01:01:59s. Time for last 1,000,000: 7s. Last read position: chr10:119,837,001
INFO 2026-06-03 21:37:18 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 01:02:15s. Time for last 1,000,000: 16s. Last read position: chr10:122,584,332
INFO 2026-06-03 21:37:52 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 01:02:50s. Time for last 1,000,000: 34s. Last read position: chr10:122,602,103
INFO 2026-06-03 21:38:28 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 01:03:25s. Time for last 1,000,000: 35s. Last read position: chr10:122,631,066
INFO 2026-06-03 21:38:50 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 01:03:48s. Time for last 1,000,000: 22s. Last read position: chr10:129,766,839
INFO 2026-06-03 21:38:58 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 01:03:55s. Time for last 1,000,000: 7s. Last read position: chr11:308,164
INFO 2026-06-03 21:39:07 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 01:04:04s. Time for last 1,000,000: 8s. Last read position: chr11:499,092
INFO 2026-06-03 21:39:17 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 01:04:14s. Time for last 1,000,000: 10s. Last read position: chr11:830,987
INFO 2026-06-03 21:39:24 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 01:04:21s. Time for last 1,000,000: 6s. Last read position: chr11:1,182,861
INFO 2026-06-03 21:39:28 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 01:04:25s. Time for last 1,000,000: 3s. Last read position: chr11:1,187,064
INFO 2026-06-03 21:39:32 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 01:04:30s. Time for last 1,000,000: 4s. Last read position: chr11:1,191,736
INFO 2026-06-03 21:39:39 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 01:04:36s. Time for last 1,000,000: 6s. Last read position: chr11:1,229,277
INFO 2026-06-03 21:39:48 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 01:04:46s. Time for last 1,000,000: 9s. Last read position: chr11:1,241,945
INFO 2026-06-03 21:39:56 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 01:04:53s. Time for last 1,000,000: 7s. Last read position: chr11:1,243,202
INFO 2026-06-03 21:40:03 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 01:05:00s. Time for last 1,000,000: 6s. Last read position: chr11:1,243,956
INFO 2026-06-03 21:40:08 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 01:05:05s. Time for last 1,000,000: 5s. Last read position: chr11:1,244,532
INFO 2026-06-03 21:40:11 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 01:05:08s. Time for last 1,000,000: 3s. Last read position: chr11:1,245,218
INFO 2026-06-03 21:40:16 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 01:05:13s. Time for last 1,000,000: 4s. Last read position: chr11:1,246,057
INFO 2026-06-03 21:40:24 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 01:05:21s. Time for last 1,000,000: 8s. Last read position: chr11:1,247,152
INFO 2026-06-03 21:40:30 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 01:05:27s. Time for last 1,000,000: 5s. Last read position: chr11:1,247,956
INFO 2026-06-03 21:40:34 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 01:05:32s. Time for last 1,000,000: 4s. Last read position: chr11:1,248,739
INFO 2026-06-03 21:40:44 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 01:05:41s. Time for last 1,000,000: 9s. Last read position: chr11:1,249,278
INFO 2026-06-03 21:40:53 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 01:05:50s. Time for last 1,000,000: 9s. Last read position: chr11:1,250,364
INFO 2026-06-03 21:41:02 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 01:05:59s. Time for last 1,000,000: 9s. Last read position: chr11:1,251,640
INFO 2026-06-03 21:41:13 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:06:10s. Time for last 1,000,000: 11s. Last read position: chr11:1,753,834
INFO 2026-06-03 21:41:26 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:06:23s. Time for last 1,000,000: 12s. Last read position: chr11:3,823,889
INFO 2026-06-03 21:41:41 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:06:38s. Time for last 1,000,000: 14s. Last read position: chr11:8,956,247
INFO 2026-06-03 21:41:57 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:06:54s. Time for last 1,000,000: 15s. Last read position: chr11:17,052,126
INFO 2026-06-03 21:42:07 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:07:04s. Time for last 1,000,000: 9s. Last read position: chr11:34,152,387
INFO 2026-06-03 21:42:18 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:07:15s. Time for last 1,000,000: 11s. Last read position: chr11:46,428,745
INFO 2026-06-03 21:42:30 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:07:27s. Time for last 1,000,000: 11s. Last read position: chr11:57,302,190
INFO 2026-06-03 21:42:38 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:07:35s. Time for last 1,000,000: 7s. Last read position: chr11:57,739,177
INFO 2026-06-03 21:42:54 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:07:52s. Time for last 1,000,000: 16s. Last read position: chr11:60,931,717
INFO 2026-06-03 21:43:13 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:08:10s. Time for last 1,000,000: 18s. Last read position: chr11:61,880,060
INFO 2026-06-03 21:43:18 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:08:15s. Time for last 1,000,000: 5s. Last read position: chr11:62,525,592
INFO 2026-06-03 21:43:22 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:08:19s. Time for last 1,000,000: 3s. Last read position: chr11:62,602,496
INFO 2026-06-03 21:43:32 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:08:29s. Time for last 1,000,000: 10s. Last read position: chr11:62,794,255
INFO 2026-06-03 21:43:45 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:08:42s. Time for last 1,000,000: 12s. Last read position: chr11:64,165,838
INFO 2026-06-03 21:43:51 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:08:48s. Time for last 1,000,000: 6s. Last read position: chr11:64,341,007
INFO 2026-06-03 21:44:02 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:09:00s. Time for last 1,000,000: 11s. Last read position: chr11:64,910,675
INFO 2026-06-03 21:44:12 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:09:09s. Time for last 1,000,000: 9s. Last read position: chr11:65,396,884
INFO 2026-06-03 21:44:21 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:09:18s. Time for last 1,000,000: 8s. Last read position: chr11:65,624,998
INFO 2026-06-03 21:44:31 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:09:28s. Time for last 1,000,000: 10s. Last read position: chr11:65,860,706
INFO 2026-06-03 21:44:38 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:09:36s. Time for last 1,000,000: 7s. Last read position: chr11:66,437,213
INFO 2026-06-03 21:44:52 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:09:49s. Time for last 1,000,000: 13s. Last read position: chr11:67,289,484
INFO 2026-06-03 21:45:00 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:09:58s. Time for last 1,000,000: 8s. Last read position: chr11:67,585,219
INFO 2026-06-03 21:45:09 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:10:07s. Time for last 1,000,000: 9s. Last read position: chr11:68,386,628
INFO 2026-06-03 21:45:18 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:10:15s. Time for last 1,000,000: 8s. Last read position: chr11:69,643,154
INFO 2026-06-03 21:45:27 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:10:25s. Time for last 1,000,000: 9s. Last read position: chr11:72,003,342
INFO 2026-06-03 21:45:51 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:10:48s. Time for last 1,000,000: 23s. Last read position: chr11:72,712,336
INFO 2026-06-03 21:46:10 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:11:08s. Time for last 1,000,000: 19s. Last read position: chr11:74,989,007
INFO 2026-06-03 21:46:21 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:11:19s. Time for last 1,000,000: 10s. Last read position: chr11:77,667,479
INFO 2026-06-03 21:46:34 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:11:31s. Time for last 1,000,000: 12s. Last read position: chr11:94,437,203
INFO 2026-06-03 21:46:41 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:11:38s. Time for last 1,000,000: 7s. Last read position: chr11:102,527,954
INFO 2026-06-03 21:46:51 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:11:48s. Time for last 1,000,000: 9s. Last read position: chr11:116,858,633
INFO 2026-06-03 21:47:02 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:11:59s. Time for last 1,000,000: 11s. Last read position: chr11:118,503,688
INFO 2026-06-03 21:47:15 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:12:12s. Time for last 1,000,000: 13s. Last read position: chr11:119,081,090
INFO 2026-06-03 21:47:26 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:12:23s. Time for last 1,000,000: 11s. Last read position: chr11:122,656,129
INFO 2026-06-03 21:47:37 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:12:35s. Time for last 1,000,000: 11s. Last read position: chr11:128,694,156
INFO 2026-06-03 21:47:47 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:12:44s. Time for last 1,000,000: 9s. Last read position: chr11:134,261,334
INFO 2026-06-03 21:48:00 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:12:58s. Time for last 1,000,000: 13s. Last read position: chr12:4,276,205
INFO 2026-06-03 21:48:10 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:13:07s. Time for last 1,000,000: 9s. Last read position: chr12:6,492,889
INFO 2026-06-03 21:48:47 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:13:44s. Time for last 1,000,000: 36s. Last read position: chr12:6,772,824
INFO 2026-06-03 21:48:53 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:13:51s. Time for last 1,000,000: 6s. Last read position: chr12:6,977,355
INFO 2026-06-03 21:49:03 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:14:01s. Time for last 1,000,000: 10s. Last read position: chr12:8,059,022
INFO 2026-06-03 21:49:10 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:14:07s. Time for last 1,000,000: 6s. Last read position: chr12:11,869,552
INFO 2026-06-03 21:49:17 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:14:15s. Time for last 1,000,000: 7s. Last read position: chr12:18,594,559
INFO 2026-06-03 21:49:29 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:14:26s. Time for last 1,000,000: 11s. Last read position: chr12:31,983,294
INFO 2026-06-03 21:49:45 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:14:43s. Time for last 1,000,000: 16s. Last read position: chr12:47,865,148
INFO 2026-06-03 21:49:54 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:14:51s. Time for last 1,000,000: 8s. Last read position: chr12:49,041,926
INFO 2026-06-03 21:50:01 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:14:58s. Time for last 1,000,000: 7s. Last read position: chr12:49,269,650
INFO 2026-06-03 21:50:11 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:15:08s. Time for last 1,000,000: 9s. Last read position: chr12:50,248,646
INFO 2026-06-03 21:50:20 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:15:17s. Time for last 1,000,000: 8s. Last read position: chr12:52,253,219
INFO 2026-06-03 21:50:26 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:15:23s. Time for last 1,000,000: 6s. Last read position: chr12:52,904,824
INFO 2026-06-03 21:50:37 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:15:34s. Time for last 1,000,000: 11s. Last read position: chr12:53,277,562
INFO 2026-06-03 21:50:49 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:15:47s. Time for last 1,000,000: 12s. Last read position: chr12:54,183,808
INFO 2026-06-03 21:51:07 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:16:04s. Time for last 1,000,000: 17s. Last read position: chr12:55,822,132
INFO 2026-06-03 21:51:21 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:16:18s. Time for last 1,000,000: 13s. Last read position: chr12:56,160,242
INFO 2026-06-03 21:51:36 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:16:33s. Time for last 1,000,000: 15s. Last read position: chr12:56,603,384
INFO 2026-06-03 21:51:48 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:16:45s. Time for last 1,000,000: 11s. Last read position: chr12:57,096,650
INFO 2026-06-03 21:52:09 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:17:07s. Time for last 1,000,000: 21s. Last read position: chr12:57,160,892
INFO 2026-06-03 21:52:27 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:17:24s. Time for last 1,000,000: 17s. Last read position: chr12:57,517,320
INFO 2026-06-03 21:52:40 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:17:37s. Time for last 1,000,000: 12s. Last read position: chr12:63,844,770
INFO 2026-06-03 21:52:48 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:17:46s. Time for last 1,000,000: 8s. Last read position: chr12:69,258,736
INFO 2026-06-03 21:52:58 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:17:55s. Time for last 1,000,000: 9s. Last read position: chr12:79,821,089
INFO 2026-06-03 21:53:06 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:18:04s. Time for last 1,000,000: 8s. Last read position: chr12:98,532,891
INFO 2026-06-03 21:53:29 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:18:26s. Time for last 1,000,000: 22s. Last read position: chr12:104,756,960
INFO 2026-06-03 21:53:38 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:18:35s. Time for last 1,000,000: 8s. Last read position: chr12:110,327,950
INFO 2026-06-03 21:53:52 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:18:49s. Time for last 1,000,000: 14s. Last read position: chr12:112,256,468
INFO 2026-06-03 21:54:09 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:19:06s. Time for last 1,000,000: 16s. Last read position: chr12:116,911,308
INFO 2026-06-03 21:54:21 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:19:18s. Time for last 1,000,000: 12s. Last read position: chr12:120,223,787
INFO 2026-06-03 21:54:30 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:19:27s. Time for last 1,000,000: 8s. Last read position: chr12:121,819,748
INFO 2026-06-03 21:54:41 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:19:38s. Time for last 1,000,000: 10s. Last read position: chr12:123,265,231
INFO 2026-06-03 21:54:57 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:19:54s. Time for last 1,000,000: 16s. Last read position: chr12:124,422,509
INFO 2026-06-03 21:55:08 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:20:05s. Time for last 1,000,000: 10s. Last read position: chr12:132,570,080
INFO 2026-06-03 21:55:17 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:20:15s. Time for last 1,000,000: 9s. Last read position: chr13:23,368,401
INFO 2026-06-03 21:55:25 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:20:22s. Time for last 1,000,000: 7s. Last read position: chr13:40,771,027
INFO 2026-06-03 21:55:34 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:20:31s. Time for last 1,000,000: 8s. Last read position: chr13:51,964,931
INFO 2026-06-03 21:55:45 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:20:43s. Time for last 1,000,000: 11s. Last read position: chr13:77,900,560
INFO 2026-06-03 21:55:58 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:20:55s. Time for last 1,000,000: 12s. Last read position: chr13:109,785,459
INFO 2026-06-03 21:56:11 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:21:08s. Time for last 1,000,000: 13s. Last read position: chr13:112,785,135
INFO 2026-06-03 21:56:25 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:21:22s. Time for last 1,000,000: 13s. Last read position: chr14:20,801,797
INFO 2026-06-03 21:56:39 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 01:21:36s. Time for last 1,000,000: 14s. Last read position: chr14:22,872,188
INFO 2026-06-03 21:56:47 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 01:21:44s. Time for last 1,000,000: 8s. Last read position: chr14:23,559,959
INFO 2026-06-03 21:57:00 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 01:21:58s. Time for last 1,000,000: 13s. Last read position: chr14:24,237,107
INFO 2026-06-03 21:57:13 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 01:22:11s. Time for last 1,000,000: 12s. Last read position: chr14:34,586,240
INFO 2026-06-03 21:57:21 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 01:22:18s. Time for last 1,000,000: 7s. Last read position: chr14:49,586,712
INFO 2026-06-03 21:57:28 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 01:22:25s. Time for last 1,000,000: 6s. Last read position: chr14:55,062,633
INFO 2026-06-03 21:58:02 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 01:22:59s. Time for last 1,000,000: 33s. Last read position: chr14:64,224,512
INFO 2026-06-03 21:58:18 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 01:23:15s. Time for last 1,000,000: 15s. Last read position: chr14:69,338,690
INFO 2026-06-03 21:58:28 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 01:23:26s. Time for last 1,000,000: 10s. Last read position: chr14:74,295,112
INFO 2026-06-03 21:58:37 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 01:23:34s. Time for last 1,000,000: 8s. Last read position: chr14:77,469,082
INFO 2026-06-03 21:58:47 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 01:23:44s. Time for last 1,000,000: 9s. Last read position: chr14:92,952,003
INFO 2026-06-03 21:58:57 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 01:23:54s. Time for last 1,000,000: 9s. Last read position: chr14:99,510,645
INFO 2026-06-03 22:00:09 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 01:25:06s. Time for last 1,000,000: 72s. Last read position: chr14:102,020,034
INFO 2026-06-03 22:01:41 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 01:26:38s. Time for last 1,000,000: 91s. Last read position: chr14:103,102,753
INFO 2026-06-03 22:02:02 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 01:26:59s. Time for last 1,000,000: 21s. Last read position: chr14:104,710,142
INFO 2026-06-03 22:02:22 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 01:27:19s. Time for last 1,000,000: 20s. Last read position: chr14:104,952,934
INFO 2026-06-03 22:02:30 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 01:27:28s. Time for last 1,000,000: 8s. Last read position: chr14:105,643,931
INFO 2026-06-03 22:02:32 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 01:27:29s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,600
INFO 2026-06-03 22:02:33 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 01:27:31s. Time for last 1,000,000: 1s. Last read position: chr14:105,844,830
INFO 2026-06-03 22:02:52 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 01:27:49s. Time for last 1,000,000: 18s. Last read position: chr15:30,361,131
INFO 2026-06-03 22:02:58 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 01:27:56s. Time for last 1,000,000: 6s. Last read position: chr15:38,484,263
INFO 2026-06-03 22:03:06 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 01:28:03s. Time for last 1,000,000: 7s. Last read position: chr15:41,562,552
INFO 2026-06-03 22:03:18 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 01:28:15s. Time for last 1,000,000: 11s. Last read position: chr15:43,572,807
INFO 2026-06-03 22:03:25 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 01:28:23s. Time for last 1,000,000: 7s. Last read position: chr15:44,651,515
INFO 2026-06-03 22:03:32 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 01:28:29s. Time for last 1,000,000: 6s. Last read position: chr15:45,106,930
INFO 2026-06-03 22:03:43 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 01:28:40s. Time for last 1,000,000: 10s. Last read position: chr15:45,658,932
INFO 2026-06-03 22:03:55 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 01:28:52s. Time for last 1,000,000: 11s. Last read position: chr15:58,184,386
INFO 2026-06-03 22:04:12 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 01:29:10s. Time for last 1,000,000: 17s. Last read position: chr15:63,126,957
INFO 2026-06-03 22:04:20 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 01:29:17s. Time for last 1,000,000: 7s. Last read position: chr15:66,502,673
INFO 2026-06-03 22:04:32 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 01:29:30s. Time for last 1,000,000: 12s. Last read position: chr15:72,375,789
INFO 2026-06-03 22:04:45 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 01:29:42s. Time for last 1,000,000: 12s. Last read position: chr15:74,044,451
INFO 2026-06-03 22:04:55 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 01:29:52s. Time for last 1,000,000: 9s. Last read position: chr15:75,676,274
INFO 2026-06-03 22:05:09 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 01:30:06s. Time for last 1,000,000: 13s. Last read position: chr15:82,461,764
INFO 2026-06-03 22:05:20 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 01:30:18s. Time for last 1,000,000: 11s. Last read position: chr15:89,333,489
INFO 2026-06-03 22:05:32 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 01:30:29s. Time for last 1,000,000: 11s. Last read position: chr15:96,334,593
INFO 2026-06-03 22:05:39 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 01:30:37s. Time for last 1,000,000: 7s. Last read position: chr16:547,877
INFO 2026-06-03 22:05:53 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 01:30:50s. Time for last 1,000,000: 13s. Last read position: chr16:1,366,312
INFO 2026-06-03 22:06:02 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 01:30:59s. Time for last 1,000,000: 8s. Last read position: chr16:2,036,331
INFO 2026-06-03 22:06:33 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 01:31:30s. Time for last 1,000,000: 30s. Last read position: chr16:2,519,391
INFO 2026-06-03 22:06:45 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 01:31:43s. Time for last 1,000,000: 12s. Last read position: chr16:2,821,453
INFO 2026-06-03 22:06:57 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 01:31:54s. Time for last 1,000,000: 11s. Last read position: chr16:3,773,886
INFO 2026-06-03 22:07:10 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 01:32:07s. Time for last 1,000,000: 12s. Last read position: chr16:8,855,213
INFO 2026-06-03 22:07:25 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 01:32:22s. Time for last 1,000,000: 15s. Last read position: chr16:11,345,707
INFO 2026-06-03 22:07:33 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 01:32:31s. Time for last 1,000,000: 8s. Last read position: chr16:14,911,672
INFO 2026-06-03 22:07:43 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 01:32:40s. Time for last 1,000,000: 9s. Last read position: chr16:15,718,405
INFO 2026-06-03 22:07:53 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 01:32:51s. Time for last 1,000,000: 10s. Last read position: chr16:16,350,297
INFO 2026-06-03 22:07:56 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 01:32:53s. Time for last 1,000,000: 2s. Last read position: chr16:18,392,099
INFO 2026-06-03 22:08:04 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 01:33:01s. Time for last 1,000,000: 8s. Last read position: chr16:19,472,123
INFO 2026-06-03 22:08:10 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 01:33:07s. Time for last 1,000,000: 5s. Last read position: chr16:21,834,930
INFO 2026-06-03 22:08:15 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 01:33:12s. Time for last 1,000,000: 4s. Last read position: chr16:22,534,218
INFO 2026-06-03 22:08:22 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 01:33:19s. Time for last 1,000,000: 7s. Last read position: chr16:27,464,412
INFO 2026-06-03 22:08:32 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 01:33:29s. Time for last 1,000,000: 9s. Last read position: chr16:28,735,320
INFO 2026-06-03 22:08:44 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 01:33:41s. Time for last 1,000,000: 12s. Last read position: chr16:29,384,186
INFO 2026-06-03 22:08:47 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 01:33:44s. Time for last 1,000,000: 3s. Last read position: chr16:29,807,490
INFO 2026-06-03 22:08:56 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 01:33:54s. Time for last 1,000,000: 9s. Last read position: chr16:30,068,900
INFO 2026-06-03 22:09:06 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 01:34:03s. Time for last 1,000,000: 9s. Last read position: chr16:30,231,557
INFO 2026-06-03 22:09:11 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 01:34:08s. Time for last 1,000,000: 5s. Last read position: chr16:30,707,199
INFO 2026-06-03 22:09:20 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 01:34:17s. Time for last 1,000,000: 8s. Last read position: chr16:30,986,113
INFO 2026-06-03 22:09:29 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 01:34:26s. Time for last 1,000,000: 8s. Last read position: chr16:31,201,562
INFO 2026-06-03 22:09:37 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 01:34:35s. Time for last 1,000,000: 8s. Last read position: chr16:51,645,852
INFO 2026-06-03 22:09:55 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 01:34:52s. Time for last 1,000,000: 17s. Last read position: chr16:57,081,145
INFO 2026-06-03 22:10:11 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 01:35:08s. Time for last 1,000,000: 16s. Last read position: chr16:66,563,137
INFO 2026-06-03 22:10:22 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 01:35:19s. Time for last 1,000,000: 11s. Last read position: chr16:67,879,115
INFO 2026-06-03 22:10:31 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 01:35:29s. Time for last 1,000,000: 9s. Last read position: chr16:69,328,985
INFO 2026-06-03 22:10:46 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 01:35:43s. Time for last 1,000,000: 14s. Last read position: chr16:71,640,415
INFO 2026-06-03 22:10:56 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 01:35:53s. Time for last 1,000,000: 9s. Last read position: chr16:75,641,633
INFO 2026-06-03 22:11:03 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 01:36:01s. Time for last 1,000,000: 7s. Last read position: chr16:85,799,735
INFO 2026-06-03 22:11:09 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 01:36:06s. Time for last 1,000,000: 5s. Last read position: chr16:88,646,135
INFO 2026-06-03 22:11:20 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 01:36:17s. Time for last 1,000,000: 11s. Last read position: chr16:89,481,026
INFO 2026-06-03 22:11:39 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 01:36:36s. Time for last 1,000,000: 18s. Last read position: chr17:321,360
INFO 2026-06-03 22:11:53 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 01:36:50s. Time for last 1,000,000: 13s. Last read position: chr17:1,423,577
INFO 2026-06-03 22:12:07 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 01:37:04s. Time for last 1,000,000: 14s. Last read position: chr17:1,725,221
INFO 2026-06-03 22:12:16 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 01:37:13s. Time for last 1,000,000: 9s. Last read position: chr17:2,695,509
INFO 2026-06-03 22:12:27 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 01:37:25s. Time for last 1,000,000: 11s. Last read position: chr17:4,076,934
INFO 2026-06-03 22:12:38 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 01:37:35s. Time for last 1,000,000: 10s. Last read position: chr17:4,735,233
INFO 2026-06-03 22:12:50 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 01:37:47s. Time for last 1,000,000: 12s. Last read position: chr17:4,948,285
INFO 2026-06-03 22:12:58 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 01:37:56s. Time for last 1,000,000: 8s. Last read position: chr17:5,539,503
INFO 2026-06-03 22:13:15 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 01:38:12s. Time for last 1,000,000: 16s. Last read position: chr17:7,240,851
INFO 2026-06-03 22:13:24 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 01:38:21s. Time for last 1,000,000: 9s. Last read position: chr17:7,462,741
INFO 2026-06-03 22:13:34 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 01:38:31s. Time for last 1,000,000: 9s. Last read position: chr17:7,514,029
INFO 2026-06-03 22:13:45 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 01:38:42s. Time for last 1,000,000: 11s. Last read position: chr17:7,849,064
INFO 2026-06-03 22:13:59 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 01:38:57s. Time for last 1,000,000: 14s. Last read position: chr17:8,229,371
INFO 2026-06-03 22:14:12 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 01:39:09s. Time for last 1,000,000: 12s. Last read position: chr17:16,382,022
INFO 2026-06-03 22:14:22 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 01:39:20s. Time for last 1,000,000: 10s. Last read position: chr17:18,670,867
INFO 2026-06-03 22:14:34 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 01:39:31s. Time for last 1,000,000: 11s. Last read position: chr17:28,355,852
INFO 2026-06-03 22:14:45 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 01:39:43s. Time for last 1,000,000: 11s. Last read position: chr17:29,094,765
INFO 2026-06-03 22:15:02 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 01:39:59s. Time for last 1,000,000: 16s. Last read position: chr17:31,993,263
INFO 2026-06-03 22:15:11 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 01:40:09s. Time for last 1,000,000: 9s. Last read position: chr17:36,089,190
INFO 2026-06-03 22:15:19 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 01:40:16s. Time for last 1,000,000: 7s. Last read position: chr17:38,318,726
INFO 2026-06-03 22:15:25 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 01:40:22s. Time for last 1,000,000: 6s. Last read position: chr17:38,853,032
INFO 2026-06-03 22:15:36 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 01:40:33s. Time for last 1,000,000: 10s. Last read position: chr17:39,710,351
INFO 2026-06-03 22:16:06 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 01:41:03s. Time for last 1,000,000: 30s. Last read position: chr17:39,730,237
INFO 2026-06-03 22:16:13 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 01:41:11s. Time for last 1,000,000: 7s. Last read position: chr17:40,630,714
INFO 2026-06-03 22:16:19 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 01:41:16s. Time for last 1,000,000: 5s. Last read position: chr17:41,764,803
INFO 2026-06-03 22:16:40 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 01:41:37s. Time for last 1,000,000: 20s. Last read position: chr17:42,513,955
INFO 2026-06-03 22:16:49 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 01:41:47s. Time for last 1,000,000: 9s. Last read position: chr17:44,036,221
INFO 2026-06-03 22:17:01 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 01:41:58s. Time for last 1,000,000: 11s. Last read position: chr17:44,883,131
INFO 2026-06-03 22:17:11 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 01:42:08s. Time for last 1,000,000: 10s. Last read position: chr17:46,296,359
INFO 2026-06-03 22:17:22 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 01:42:19s. Time for last 1,000,000: 11s. Last read position: chr17:48,551,024
INFO 2026-06-03 22:17:30 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 01:42:27s. Time for last 1,000,000: 7s. Last read position: chr17:50,185,992
INFO 2026-06-03 22:17:35 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 01:42:33s. Time for last 1,000,000: 5s. Last read position: chr17:50,188,569
INFO 2026-06-03 22:17:41 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 01:42:39s. Time for last 1,000,000: 6s. Last read position: chr17:50,190,006
INFO 2026-06-03 22:17:49 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 01:42:46s. Time for last 1,000,000: 7s. Last read position: chr17:50,191,985
INFO 2026-06-03 22:17:58 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 01:42:56s. Time for last 1,000,000: 9s. Last read position: chr17:50,194,376
INFO 2026-06-03 22:18:10 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 01:43:07s. Time for last 1,000,000: 11s. Last read position: chr17:50,195,653
INFO 2026-06-03 22:18:22 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 01:43:20s. Time for last 1,000,000: 12s. Last read position: chr17:50,197,734
INFO 2026-06-03 22:18:35 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 01:43:33s. Time for last 1,000,000: 12s. Last read position: chr17:50,468,130
INFO 2026-06-03 22:18:47 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 01:43:45s. Time for last 1,000,000: 12s. Last read position: chr17:57,108,041
INFO 2026-06-03 22:18:59 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 01:43:57s. Time for last 1,000,000: 11s. Last read position: chr17:59,685,793
INFO 2026-06-03 22:19:12 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 01:44:09s. Time for last 1,000,000: 12s. Last read position: chr17:63,836,988
INFO 2026-06-03 22:19:24 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 01:44:21s. Time for last 1,000,000: 12s. Last read position: chr17:68,205,741
INFO 2026-06-03 22:19:33 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 01:44:31s. Time for last 1,000,000: 9s. Last read position: chr17:74,749,204
INFO 2026-06-03 22:19:44 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 01:44:42s. Time for last 1,000,000: 10s. Last read position: chr17:75,522,413
INFO 2026-06-03 22:20:10 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 01:45:07s. Time for last 1,000,000: 25s. Last read position: chr17:75,778,588
INFO 2026-06-03 22:20:18 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 01:45:15s. Time for last 1,000,000: 8s. Last read position: chr17:76,270,258
INFO 2026-06-03 22:20:31 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 01:45:28s. Time for last 1,000,000: 12s. Last read position: chr17:78,071,105
INFO 2026-06-03 22:20:40 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 01:45:37s. Time for last 1,000,000: 9s. Last read position: chr17:78,973,033
INFO 2026-06-03 22:20:49 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 01:45:46s. Time for last 1,000,000: 8s. Last read position: chr17:80,298,421
INFO 2026-06-03 22:21:10 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 01:46:08s. Time for last 1,000,000: 21s. Last read position: chr17:80,363,243
INFO 2026-06-03 22:21:29 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 01:46:26s. Time for last 1,000,000: 18s. Last read position: chr17:81,459,473
INFO 2026-06-03 22:21:54 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 01:46:51s. Time for last 1,000,000: 24s. Last read position: chr17:81,846,484
INFO 2026-06-03 22:22:19 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 01:47:16s. Time for last 1,000,000: 24s. Last read position: chr17:82,082,395
INFO 2026-06-03 22:22:30 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 01:47:27s. Time for last 1,000,000: 10s. Last read position: chr17:82,443,971
INFO 2026-06-03 22:22:42 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 01:47:39s. Time for last 1,000,000: 11s. Last read position: chr18:5,396,225
INFO 2026-06-03 22:22:52 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 01:47:49s. Time for last 1,000,000: 10s. Last read position: chr18:13,752,374
INFO 2026-06-03 22:23:01 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 01:47:59s. Time for last 1,000,000: 9s. Last read position: chr18:32,412,600
INFO 2026-06-03 22:23:12 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 01:48:10s. Time for last 1,000,000: 10s. Last read position: chr18:51,177,552
INFO 2026-06-03 22:23:29 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 01:48:26s. Time for last 1,000,000: 16s. Last read position: chr18:74,505,933
INFO 2026-06-03 22:23:38 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 01:48:35s. Time for last 1,000,000: 9s. Last read position: chr19:622,583
INFO 2026-06-03 22:23:47 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 01:48:44s. Time for last 1,000,000: 9s. Last read position: chr19:1,046,900
INFO 2026-06-03 22:23:59 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 01:48:57s. Time for last 1,000,000: 12s. Last read position: chr19:1,251,559
INFO 2026-06-03 22:24:08 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 01:49:05s. Time for last 1,000,000: 8s. Last read position: chr19:1,619,114
INFO 2026-06-03 22:24:17 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 01:49:14s. Time for last 1,000,000: 8s. Last read position: chr19:2,226,915
INFO 2026-06-03 22:24:23 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 01:49:21s. Time for last 1,000,000: 6s. Last read position: chr19:3,453,819
INFO 2026-06-03 22:24:30 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 01:49:28s. Time for last 1,000,000: 7s. Last read position: chr19:4,361,607
INFO 2026-06-03 22:24:39 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 01:49:36s. Time for last 1,000,000: 8s. Last read position: chr19:5,621,386
INFO 2026-06-03 22:24:48 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 01:49:45s. Time for last 1,000,000: 8s. Last read position: chr19:6,677,875
INFO 2026-06-03 22:24:58 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 01:49:56s. Time for last 1,000,000: 10s. Last read position: chr19:7,125,501
INFO 2026-06-03 22:25:08 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 01:50:06s. Time for last 1,000,000: 9s. Last read position: chr19:8,438,465
INFO 2026-06-03 22:25:26 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 01:50:23s. Time for last 1,000,000: 17s. Last read position: chr19:9,752,313
INFO 2026-06-03 22:25:43 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 01:50:40s. Time for last 1,000,000: 16s. Last read position: chr19:10,491,688
INFO 2026-06-03 22:26:14 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 01:51:11s. Time for last 1,000,000: 31s. Last read position: chr19:11,178,553
INFO 2026-06-03 22:26:24 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 01:51:21s. Time for last 1,000,000: 10s. Last read position: chr19:12,734,407
INFO 2026-06-03 22:26:33 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 01:51:30s. Time for last 1,000,000: 8s. Last read position: chr19:13,804,811
INFO 2026-06-03 22:26:41 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 01:51:38s. Time for last 1,000,000: 8s. Last read position: chr19:14,516,002
INFO 2026-06-03 22:26:50 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 01:51:47s. Time for last 1,000,000: 9s. Last read position: chr19:15,243,476
INFO 2026-06-03 22:27:03 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 01:52:01s. Time for last 1,000,000: 13s. Last read position: chr19:16,093,705
INFO 2026-06-03 22:27:16 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 01:52:13s. Time for last 1,000,000: 12s. Last read position: chr19:17,236,030
INFO 2026-06-03 22:27:24 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 01:52:22s. Time for last 1,000,000: 8s. Last read position: chr19:17,917,656
INFO 2026-06-03 22:27:30 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 01:52:27s. Time for last 1,000,000: 5s. Last read position: chr19:18,564,912
INFO 2026-06-03 22:27:39 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 01:52:36s. Time for last 1,000,000: 8s. Last read position: chr19:19,526,246
INFO 2026-06-03 22:27:45 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 01:52:42s. Time for last 1,000,000: 5s. Last read position: chr19:33,387,931
INFO 2026-06-03 22:27:57 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 01:52:54s. Time for last 1,000,000: 12s. Last read position: chr19:35,123,527
INFO 2026-06-03 22:28:09 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 01:53:06s. Time for last 1,000,000: 11s. Last read position: chr19:35,620,015
INFO 2026-06-03 22:28:18 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 01:53:15s. Time for last 1,000,000: 9s. Last read position: chr19:35,898,435
INFO 2026-06-03 22:28:29 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 01:53:27s. Time for last 1,000,000: 11s. Last read position: chr19:38,264,949
INFO 2026-06-03 22:28:38 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 01:53:35s. Time for last 1,000,000: 8s. Last read position: chr19:38,717,950
INFO 2026-06-03 22:28:47 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 01:53:45s. Time for last 1,000,000: 9s. Last read position: chr19:39,329,596
INFO 2026-06-03 22:28:57 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 01:53:54s. Time for last 1,000,000: 9s. Last read position: chr19:39,834,675
INFO 2026-06-03 22:29:01 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 01:53:58s. Time for last 1,000,000: 3s. Last read position: chr19:39,913,926
INFO 2026-06-03 22:29:13 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 01:54:11s. Time for last 1,000,000: 12s. Last read position: chr19:40,458,503
INFO 2026-06-03 22:29:31 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 01:54:28s. Time for last 1,000,000: 17s. Last read position: chr19:41,264,633
INFO 2026-06-03 22:29:40 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 01:54:37s. Time for last 1,000,000: 9s. Last read position: chr19:41,721,091
INFO 2026-06-03 22:29:52 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 01:54:49s. Time for last 1,000,000: 11s. Last read position: chr19:42,249,140
INFO 2026-06-03 22:29:58 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 01:54:55s. Time for last 1,000,000: 6s. Last read position: chr19:42,292,569
INFO 2026-06-03 22:30:08 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 01:55:05s. Time for last 1,000,000: 9s. Last read position: chr19:43,648,965
INFO 2026-06-03 22:30:13 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 01:55:10s. Time for last 1,000,000: 5s. Last read position: chr19:44,846,440
INFO 2026-06-03 22:30:18 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 01:55:15s. Time for last 1,000,000: 4s. Last read position: chr19:45,032,622
INFO 2026-06-03 22:30:26 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 01:55:23s. Time for last 1,000,000: 7s. Last read position: chr19:45,524,650
INFO 2026-06-03 22:30:34 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 01:55:31s. Time for last 1,000,000: 8s. Last read position: chr19:46,387,160
INFO 2026-06-03 22:30:42 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 01:55:39s. Time for last 1,000,000: 8s. Last read position: chr19:47,090,100
INFO 2026-06-03 22:30:51 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 01:55:48s. Time for last 1,000,000: 8s. Last read position: chr19:48,182,618
INFO 2026-06-03 22:30:58 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 01:55:55s. Time for last 1,000,000: 7s. Last read position: chr19:48,806,627
INFO 2026-06-03 22:31:05 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 01:56:02s. Time for last 1,000,000: 7s. Last read position: chr19:49,108,218
INFO 2026-06-03 22:31:16 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 01:56:14s. Time for last 1,000,000: 11s. Last read position: chr19:49,513,439
INFO 2026-06-03 22:31:21 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 01:56:18s. Time for last 1,000,000: 4s. Last read position: chr19:49,653,609
INFO 2026-06-03 22:31:33 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 01:56:31s. Time for last 1,000,000: 12s. Last read position: chr19:49,861,619
INFO 2026-06-03 22:31:52 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 01:56:49s. Time for last 1,000,000: 18s. Last read position: chr19:50,286,544
INFO 2026-06-03 22:32:05 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 01:57:02s. Time for last 1,000,000: 13s. Last read position: chr19:51,415,379
INFO 2026-06-03 22:32:12 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 01:57:10s. Time for last 1,000,000: 7s. Last read position: chr19:54,174,330
INFO 2026-06-03 22:32:21 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 01:57:18s. Time for last 1,000,000: 8s. Last read position: chr19:54,458,517
INFO 2026-06-03 22:32:31 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 01:57:28s. Time for last 1,000,000: 9s. Last read position: chr19:55,202,063
INFO 2026-06-03 22:32:36 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 01:57:33s. Time for last 1,000,000: 4s. Last read position: chr19:55,592,698
INFO 2026-06-03 22:32:40 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 01:57:37s. Time for last 1,000,000: 4s. Last read position: chr19:57,320,731
INFO 2026-06-03 22:32:46 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 01:57:43s. Time for last 1,000,000: 5s. Last read position: chr19:58,549,193
INFO 2026-06-03 22:32:56 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 01:57:53s. Time for last 1,000,000: 10s. Last read position: chr20:1,571,708
INFO 2026-06-03 22:33:02 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 01:58:00s. Time for last 1,000,000: 6s. Last read position: chr20:3,706,410
INFO 2026-06-03 22:33:09 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 01:58:06s. Time for last 1,000,000: 6s. Last read position: chr20:11,918,320
INFO 2026-06-03 22:33:22 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 01:58:19s. Time for last 1,000,000: 13s. Last read position: chr20:20,037,532
INFO 2026-06-03 22:33:30 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 01:58:27s. Time for last 1,000,000: 7s. Last read position: chr20:31,722,192
INFO 2026-06-03 22:33:36 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 01:58:33s. Time for last 1,000,000: 6s. Last read position: chr20:33,302,997
INFO 2026-06-03 22:33:45 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 01:58:42s. Time for last 1,000,000: 9s. Last read position: chr20:35,146,913
INFO 2026-06-03 22:34:00 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 01:58:58s. Time for last 1,000,000: 15s. Last read position: chr20:36,632,536
INFO 2026-06-03 22:34:08 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 01:59:05s. Time for last 1,000,000: 7s. Last read position: chr20:38,364,687
INFO 2026-06-03 22:34:16 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 01:59:13s. Time for last 1,000,000: 7s. Last read position: chr20:45,174,913
INFO 2026-06-03 22:34:31 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 01:59:28s. Time for last 1,000,000: 15s. Last read position: chr20:45,898,399
INFO 2026-06-03 22:34:42 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 01:59:39s. Time for last 1,000,000: 11s. Last read position: chr20:49,076,979
INFO 2026-06-03 22:34:48 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 01:59:45s. Time for last 1,000,000: 5s. Last read position: chr20:51,674,223
INFO 2026-06-03 22:35:06 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 02:00:03s. Time for last 1,000,000: 17s. Last read position: chr20:59,006,326
INFO 2026-06-03 22:35:15 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 02:00:13s. Time for last 1,000,000: 9s. Last read position: chr20:62,323,455
INFO 2026-06-03 22:35:27 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 02:00:24s. Time for last 1,000,000: 11s. Last read position: chr20:62,813,412
INFO 2026-06-03 22:35:33 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 02:00:31s. Time for last 1,000,000: 6s. Last read position: chr20:63,690,345
INFO 2026-06-03 22:35:41 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 02:00:38s. Time for last 1,000,000: 7s. Last read position: chr21:5,129,783
INFO 2026-06-03 22:35:42 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 02:00:40s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,952
INFO 2026-06-03 22:35:43 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 02:00:40s. Time for last 1,000,000: 0s. Last read position: chr21:8,258,924
INFO 2026-06-03 22:35:44 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 02:00:41s. Time for last 1,000,000: 0s. Last read position: chr21:8,399,126
INFO 2026-06-03 22:35:45 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 02:00:42s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,961
INFO 2026-06-03 22:35:46 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 02:00:43s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,566
INFO 2026-06-03 22:35:53 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 02:00:50s. Time for last 1,000,000: 6s. Last read position: chr21:32,347,693
INFO 2026-06-03 22:36:03 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 02:01:00s. Time for last 1,000,000: 10s. Last read position: chr21:36,237,319
INFO 2026-06-03 22:36:25 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 02:01:22s. Time for last 1,000,000: 21s. Last read position: chr21:42,362,323
INFO 2026-06-03 22:36:31 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 02:01:28s. Time for last 1,000,000: 6s. Last read position: chr21:44,395,505
INFO 2026-06-03 22:36:43 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 02:01:41s. Time for last 1,000,000: 12s. Last read position: chr21:46,003,866
INFO 2026-06-03 22:36:56 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 02:01:53s. Time for last 1,000,000: 12s. Last read position: chr22:18,087,956
INFO 2026-06-03 22:37:06 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 02:02:03s. Time for last 1,000,000: 10s. Last read position: chr22:21,445,117
INFO 2026-06-03 22:37:15 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 02:02:13s. Time for last 1,000,000: 9s. Last read position: chr22:23,767,538
INFO 2026-06-03 22:37:25 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 02:02:22s. Time for last 1,000,000: 9s. Last read position: chr22:27,853,531
INFO 2026-06-03 22:37:42 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 02:02:39s. Time for last 1,000,000: 17s. Last read position: chr22:29,308,516
INFO 2026-06-03 22:37:52 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 02:02:49s. Time for last 1,000,000: 10s. Last read position: chr22:31,575,254
INFO 2026-06-03 22:38:08 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 02:03:05s. Time for last 1,000,000: 15s. Last read position: chr22:36,282,697
INFO 2026-06-03 22:38:15 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 02:03:12s. Time for last 1,000,000: 6s. Last read position: chr22:36,937,921
INFO 2026-06-03 22:38:21 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 02:03:18s. Time for last 1,000,000: 6s. Last read position: chr22:37,843,921
INFO 2026-06-03 22:38:29 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 02:03:26s. Time for last 1,000,000: 8s. Last read position: chr22:39,225,740
INFO 2026-06-03 22:38:38 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 02:03:35s. Time for last 1,000,000: 8s. Last read position: chr22:41,339,904
INFO 2026-06-03 22:38:47 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 02:03:44s. Time for last 1,000,000: 8s. Last read position: chr22:42,786,337
INFO 2026-06-03 22:38:56 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 02:03:53s. Time for last 1,000,000: 8s. Last read position: chr22:49,886,340
INFO 2026-06-03 22:39:16 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 02:04:13s. Time for last 1,000,000: 19s. Last read position: chr22:50,290,472
INFO 2026-06-03 22:39:27 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 02:04:24s. Time for last 1,000,000: 11s. Last read position: chr22:50,526,291
INFO 2026-06-03 22:39:35 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 02:04:32s. Time for last 1,000,000: 7s. Last read position: chr22:50,579,459
INFO 2026-06-03 22:39:41 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 02:04:38s. Time for last 1,000,000: 5s. Last read position: chrX:13,569,845
INFO 2026-06-03 22:39:50 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 02:04:47s. Time for last 1,000,000: 9s. Last read position: chrX:40,073,361
INFO 2026-06-03 22:40:10 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 02:05:07s. Time for last 1,000,000: 19s. Last read position: chrX:47,586,541
INFO 2026-06-03 22:40:20 SinglePassSamProgram Processed 637,000,000 records. Elapsed time: 02:05:17s. Time for last 1,000,000: 9s. Last read position: chrX:49,829,378
INFO 2026-06-03 22:40:37 SinglePassSamProgram Processed 638,000,000 records. Elapsed time: 02:05:34s. Time for last 1,000,000: 17s. Last read position: chrX:54,558,582
INFO 2026-06-03 22:40:43 SinglePassSamProgram Processed 639,000,000 records. Elapsed time: 02:05:41s. Time for last 1,000,000: 6s. Last read position: chrX:71,137,255
INFO 2026-06-03 22:41:04 SinglePassSamProgram Processed 640,000,000 records. Elapsed time: 02:06:01s. Time for last 1,000,000: 20s. Last read position: chrX:78,104,380
INFO 2026-06-03 22:41:09 SinglePassSamProgram Processed 641,000,000 records. Elapsed time: 02:06:06s. Time for last 1,000,000: 5s. Last read position: chrX:108,195,082
INFO 2026-06-03 22:41:20 SinglePassSamProgram Processed 642,000,000 records. Elapsed time: 02:06:18s. Time for last 1,000,000: 11s. Last read position: chrX:129,921,419
INFO 2026-06-03 22:41:29 SinglePassSamProgram Processed 643,000,000 records. Elapsed time: 02:06:26s. Time for last 1,000,000: 8s. Last read position: chrX:150,660,386
INFO 2026-06-03 22:41:41 SinglePassSamProgram Processed 644,000,000 records. Elapsed time: 02:06:39s. Time for last 1,000,000: 12s. Last read position: chrX:153,952,574
INFO 2026-06-03 22:41:56 SinglePassSamProgram Processed 645,000,000 records. Elapsed time: 02:06:53s. Time for last 1,000,000: 14s. Last read position: chrX:154,359,036
INFO 2026-06-03 22:42:41 SinglePassSamProgram Processed 646,000,000 records. Elapsed time: 02:07:38s. Time for last 1,000,000: 45s. Last read position: chrX:154,437,266
INFO 2026-06-03 22:42:47 SinglePassSamProgram Processed 647,000,000 records. Elapsed time: 02:07:44s. Time for last 1,000,000: 6s. Last read position: chrY:22,724,737
INFO 2026-06-03 22:42:48 SinglePassSamProgram Processed 648,000,000 records. Elapsed time: 02:07:45s. Time for last 1,000,000: 0s. Last read position: GL000220.1:115,419
INFO 2026-06-03 22:42:49 SinglePassSamProgram Processed 649,000,000 records. Elapsed time: 02:07:46s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,105
INFO 2026-06-03 22:42:49 SinglePassSamProgram Processed 650,000,000 records. Elapsed time: 02:07:46s. Time for last 1,000,000: 0s. Last read position: GL000220.1:160,606
INFO 2026-06-03 22:42:50 SinglePassSamProgram Processed 651,000,000 records. Elapsed time: 02:07:47s. Time for last 1,000,000: 0s. Last read position: KI270733.1:131,032
INFO 2026-06-03 22:42:51 SinglePassSamProgram Processed 652,000,000 records. Elapsed time: 02:07:48s. Time for last 1,000,000: 0s. Last read position: KI270733.1:174,623
INFO 2026-06-03 22:42:51 SinglePassSamProgram Processed 653,000,000 records. Elapsed time: 02:07:49s. Time for last 1,000,000: 0s. Last read position: KI270733.1:178,257
INFO 2026-06-03 22:42:52 SinglePassSamProgram Processed 654,000,000 records. Elapsed time: 02:07:49s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 22:42:53 SinglePassSamProgram Processed 655,000,000 records. Elapsed time: 02:07:50s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 22:42:54 SinglePassSamProgram Processed 656,000,000 records. Elapsed time: 02:07:51s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 22:42:54 SinglePassSamProgram Processed 657,000,000 records. Elapsed time: 02:07:52s. Time for last 1,000,000: 0s. Last read position: */*
[Wed Jun 03 22:42:56 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 127.93 minutes.
Runtime.totalMemory()=3497000960