File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/047c8a32f3cba8bfd9e06ba52fa665/.command.log
Size
6.9 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-13d441-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/047c8a32f3cba8bfd9e06ba52fa665/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/047c8a32f3cba8bfd9e06ba52fa665/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/885a7643694b03a5eaf7f4e50ae9c0/aih-tih-sc-13d441-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/db8473fc22506acfa84953b753d000/aih-tih-sc-13d441-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
RBBP4--FAM13C
starfusion
AC015712.1--FAM13C
starfusion
TLK2--AC240565.1
starfusion
STX16--NPEPL1
starfusion
arriba
TVP23C--CDRT4
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGA5--PCDHGC4
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA5--PCDHGA8
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGA5--PCDHGA12
arriba
PCDHGA5--PCDHGC3
arriba
PCDHGA5--PCDHGB7
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba
KLRC4--KLRK1
arriba
CRYZL2P--SEC16B
arriba

  0%|          | 0/30 [00:00<?, ?it/s]
Processing RBBP4--FAM13C:   0%|          | 0/30 [00:00<?, ?it/s]
Processing RBBP4--FAM13C:   3%|▎         | 1/30 [00:00<00:03,  9.05it/s]
Processing AC015712.1--FAM13C:   3%|▎         | 1/30 [00:00<00:03,  9.05it/s]
Processing AC015712.1--FAM13C:   7%|▋         | 2/30 [00:00<00:03,  9.30it/s]
Processing TLK2--AC240565.1:   7%|▋         | 2/30 [00:00<00:03,  9.30it/s]  
Processing TLK2--AC240565.1:  10%|█         | 3/30 [00:00<00:02,  9.41it/s]
Processing STX16--NPEPL1:  10%|█         | 3/30 [00:00<00:02,  9.41it/s]   
Processing STX16--NPEPL1:  13%|█▎        | 4/30 [00:00<00:02,  9.45it/s]
Processing TVP23C--CDRT4:  13%|█▎        | 4/30 [00:00<00:02,  9.45it/s]
Processing TVP23C--CDRT4:  17%|█▋        | 5/30 [00:00<00:02,  9.48it/s]
Processing PCDHGB2--PCDHGC4:  17%|█▋        | 5/30 [00:00<00:02,  9.48it/s]
Processing PCDHGB2--PCDHGC4:  20%|██        | 6/30 [00:00<00:02,  9.49it/s]
Processing PCDHGB2--PCDHGC5:  20%|██        | 6/30 [00:00<00:02,  9.49it/s]
Processing PCDHGB2--PCDHGC5:  23%|██▎       | 7/30 [00:00<00:02,  9.51it/s]
Processing PCDHGB2--PCDHGA8:  23%|██▎       | 7/30 [00:00<00:02,  9.51it/s]
Processing PCDHGB2--PCDHGA8:  27%|██▋       | 8/30 [00:00<00:02,  9.50it/s]
Processing PCDHGB2--PCDHGB6:  27%|██▋       | 8/30 [00:00<00:02,  9.50it/s]
Processing PCDHGB2--PCDHGB6:  30%|███       | 9/30 [00:00<00:02,  9.51it/s]
Processing PCDHGB2--PCDHGA11:  30%|███       | 9/30 [00:00<00:02,  9.51it/s]
Processing PCDHGB2--PCDHGA11:  33%|███▎      | 10/30 [00:01<00:02,  9.51it/s]
Processing PCDHGB2--PCDHGA10:  33%|███▎      | 10/30 [00:01<00:02,  9.51it/s]
Processing PCDHGB2--PCDHGA10:  37%|███▋      | 11/30 [00:01<00:01,  9.53it/s]
Processing PCDHGB2--PCDHGA9:  37%|███▋      | 11/30 [00:01<00:01,  9.53it/s] 
Processing PCDHGB2--PCDHGA9:  40%|████      | 12/30 [00:01<00:01,  9.53it/s]
Processing PCDHGB2--PCDHGA12:  40%|████      | 12/30 [00:01<00:01,  9.53it/s]
Processing PCDHGB2--PCDHGA12:  43%|████▎     | 13/30 [00:01<00:01,  9.54it/s]
Processing PCDHGB2--PCDHGC3:  43%|████▎     | 13/30 [00:01<00:01,  9.54it/s] 
Processing PCDHGB2--PCDHGC3:  47%|████▋     | 14/30 [00:01<00:01,  9.53it/s]
Processing PCDHGB2--PCDHGB7:  47%|████▋     | 14/30 [00:01<00:01,  9.53it/s]
Processing PCDHGB2--PCDHGB7:  50%|█████     | 15/30 [00:01<00:01,  9.53it/s]
Processing PCDHGA5--PCDHGC4:  50%|█████     | 15/30 [00:01<00:01,  9.53it/s]
Processing PCDHGA5--PCDHGC4:  53%|█████▎    | 16/30 [00:01<00:01,  9.53it/s]
Processing PCDHGA5--PCDHGC5:  53%|█████▎    | 16/30 [00:01<00:01,  9.53it/s]
Processing PCDHGA5--PCDHGC5:  57%|█████▋    | 17/30 [00:01<00:01,  9.53it/s]
Processing PCDHGA5--PCDHGA8:  57%|█████▋    | 17/30 [00:01<00:01,  9.53it/s]
Processing PCDHGA5--PCDHGA8:  60%|██████    | 18/30 [00:01<00:01,  9.53it/s]
Processing PCDHGA5--PCDHGB6:  60%|██████    | 18/30 [00:01<00:01,  9.53it/s]
Processing PCDHGA5--PCDHGB6:  63%|██████▎   | 19/30 [00:01<00:01,  9.53it/s]
Processing PCDHGA5--PCDHGA11:  63%|██████▎   | 19/30 [00:02<00:01,  9.53it/s]
Processing PCDHGA5--PCDHGA11:  67%|██████▋   | 20/30 [00:02<00:01,  9.55it/s]
Processing PCDHGA5--PCDHGA10:  67%|██████▋   | 20/30 [00:02<00:01,  9.55it/s]
Processing PCDHGA5--PCDHGA10:  70%|███████   | 21/30 [00:02<00:00,  9.54it/s]
Processing PCDHGA5--PCDHGA9:  70%|███████   | 21/30 [00:02<00:00,  9.54it/s] 
Processing PCDHGA5--PCDHGA9:  73%|███████▎  | 22/30 [00:02<00:00,  9.54it/s]
Processing PCDHGA5--PCDHGA12:  73%|███████▎  | 22/30 [00:02<00:00,  9.54it/s]
Processing PCDHGA5--PCDHGA12:  77%|███████▋  | 23/30 [00:02<00:00,  9.55it/s]
Processing PCDHGA5--PCDHGC3:  77%|███████▋  | 23/30 [00:02<00:00,  9.55it/s] 
Processing PCDHGA5--PCDHGC3:  80%|████████  | 24/30 [00:02<00:00,  9.56it/s]
Processing PCDHGA5--PCDHGB7:  80%|████████  | 24/30 [00:02<00:00,  9.56it/s]
Processing PCDHGA5--PCDHGB7:  83%|████████▎ | 25/30 [00:02<00:00,  9.55it/s]
Processing PCDHA11--PCDHAC1:  83%|████████▎ | 25/30 [00:02<00:00,  9.55it/s]
Processing PCDHA11--PCDHAC1:  87%|████████▋ | 26/30 [00:02<00:00,  9.54it/s]
Processing PCDHA11--PCDHAC2:  87%|████████▋ | 26/30 [00:02<00:00,  9.54it/s]
Processing PCDHA11--PCDHAC2:  90%|█████████ | 27/30 [00:02<00:00,  9.53it/s]
Processing PCDHA11--PCDHA13:  90%|█████████ | 27/30 [00:02<00:00,  9.53it/s]
Processing PCDHA11--PCDHA13:  93%|█████████▎| 28/30 [00:02<00:00,  9.53it/s]
Processing KLRC4--KLRK1:  93%|█████████▎| 28/30 [00:02<00:00,  9.53it/s]    
Processing KLRC4--KLRK1:  97%|█████████▋| 29/30 [00:03<00:00,  9.54it/s]
Processing CRYZL2P--SEC16B:  97%|█████████▋| 29/30 [00:03<00:00,  9.54it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 30/30 [00:03<00:00,  9.54it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 30/30 [00:03<00:00,  9.52it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory