File Info
- Filename
- aih-tih-sc-13d441-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/047c8a32f3cba8bfd9e06ba52fa665/aih-tih-sc-13d441-R1_A23YTGFLT4_1.fusions.csv
- Size
- 7.1 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-13d441-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| RBBP4--FAM13C | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:32662337:+#chr10:59302864:-,junction_reads: 12,spanning_reads: 0,ffmp: 0.0233 | ||
| AC015712.1--FAM13C | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:100855348:+#chr10:59302864:-,junction_reads: 12,spanning_reads: 0,ffmp: 0.0233 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.0068 | ||
| STX16--NPEPL1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 66,split_reads2: 44,discordant_mates: 4,coverage1: 1922,coverage2: 549,confidence: high | position: chr20:58673711:+#chr20:58691724:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.0349 | |
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 95,split_reads2: 102,discordant_mates: 2,coverage1: 1314,coverage2: 651,confidence: high | |
| PCDHGB2--PCDHGC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 80,split_reads2: 49,discordant_mates: 0,coverage1: 551,coverage2: 11451,confidence: high | ||
| PCDHGB2--PCDHGC5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 80,split_reads2: 49,discordant_mates: 0,coverage1: 551,coverage2: 11451,confidence: high | ||
| PCDHGB2--PCDHGA8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 80,split_reads2: 49,discordant_mates: 0,coverage1: 551,coverage2: 11451,confidence: high | ||
| PCDHGB2--PCDHGB6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 80,split_reads2: 49,discordant_mates: 0,coverage1: 551,coverage2: 11451,confidence: high | ||
| PCDHGB2--PCDHGA11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 80,split_reads2: 49,discordant_mates: 0,coverage1: 551,coverage2: 11451,confidence: high | ||
| PCDHGB2--PCDHGA10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 80,split_reads2: 49,discordant_mates: 0,coverage1: 551,coverage2: 11451,confidence: high | ||
| PCDHGB2--PCDHGA9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 80,split_reads2: 49,discordant_mates: 0,coverage1: 551,coverage2: 11451,confidence: high | ||
| PCDHGB2--PCDHGA12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 80,split_reads2: 49,discordant_mates: 0,coverage1: 551,coverage2: 11451,confidence: high | ||
| PCDHGB2--PCDHGC3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 80,split_reads2: 49,discordant_mates: 0,coverage1: 551,coverage2: 11451,confidence: high | ||
| PCDHGB2--PCDHGB7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 80,split_reads2: 49,discordant_mates: 0,coverage1: 551,coverage2: 11451,confidence: high | ||
| PCDHGA5--PCDHGC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 67,split_reads2: 41,discordant_mates: 0,coverage1: 596,coverage2: 11451,confidence: high | ||
| PCDHGA5--PCDHGC5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 67,split_reads2: 41,discordant_mates: 0,coverage1: 596,coverage2: 11451,confidence: high | ||
| PCDHGA5--PCDHGA8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 67,split_reads2: 41,discordant_mates: 0,coverage1: 596,coverage2: 11451,confidence: high | ||
| PCDHGA5--PCDHGB6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 67,split_reads2: 41,discordant_mates: 0,coverage1: 596,coverage2: 11451,confidence: high | ||
| PCDHGA5--PCDHGA11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 67,split_reads2: 41,discordant_mates: 0,coverage1: 596,coverage2: 11451,confidence: high | ||
| PCDHGA5--PCDHGA10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 67,split_reads2: 41,discordant_mates: 0,coverage1: 596,coverage2: 11451,confidence: high | ||
| PCDHGA5--PCDHGA9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 67,split_reads2: 41,discordant_mates: 0,coverage1: 596,coverage2: 11451,confidence: high | ||
| PCDHGA5--PCDHGA12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 67,split_reads2: 41,discordant_mates: 0,coverage1: 596,coverage2: 11451,confidence: high | ||
| PCDHGA5--PCDHGC3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 67,split_reads2: 41,discordant_mates: 0,coverage1: 596,coverage2: 11451,confidence: high | ||
| PCDHGA5--PCDHGB7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 67,split_reads2: 41,discordant_mates: 0,coverage1: 596,coverage2: 11451,confidence: high | ||
| PCDHA11--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 35,split_reads2: 33,discordant_mates: 0,coverage1: 362,coverage2: 730,confidence: high | ||
| PCDHA11--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 35,split_reads2: 33,discordant_mates: 0,coverage1: 362,coverage2: 730,confidence: high | ||
| PCDHA11--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 35,split_reads2: 33,discordant_mates: 0,coverage1: 362,coverage2: 730,confidence: high | ||
| KLRC4--KLRK1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:10407636#chr12:10388875,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 10,split_reads2: 5,discordant_mates: 0,coverage1: 99,coverage2: 221,confidence: high | ||
| CRYZL2P--SEC16B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:178026155#chr1:177968039,reading-frame: .,type: deletion/read-through,split_reads1: 1,split_reads2: 13,discordant_mates: 0,coverage1: 22,coverage2: 188,confidence: high |
31 rows