/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
INFO	2026-06-03 19:52:39	RExecutor	Executing R script via command: Rscript /tmp/script615832872942827997.R
ERROR	2026-06-03 19:52:39	ProcessExecutor	/bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR	2026-06-03 19:52:39	ProcessExecutor	sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR	2026-06-03 19:52:39	ProcessExecutor	sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR	2026-06-03 19:52:39	ProcessExecutor	During startup - Warning messages:
ERROR	2026-06-03 19:52:39	ProcessExecutor	1: Setting LC_CTYPE failed, using "C" 
ERROR	2026-06-03 19:52:39	ProcessExecutor	2: Setting LC_COLLATE failed, using "C" 
ERROR	2026-06-03 19:52:39	ProcessExecutor	3: Setting LC_TIME failed, using "C" 
ERROR	2026-06-03 19:52:39	ProcessExecutor	4: Setting LC_MESSAGES failed, using "C" 
ERROR	2026-06-03 19:52:39	ProcessExecutor	5: Setting LC_MONETARY failed, using "C" 
ERROR	2026-06-03 19:52:39	ProcessExecutor	6: Setting LC_PAPER failed, using "C" 
ERROR	2026-06-03 19:52:39	ProcessExecutor	7: Setting LC_MEASUREMENT failed, using "C" 
INFO	2026-06-03 19:52:39	ProcessExecutor	[1] "Checking if R is installed"
ERROR	2026-06-03 19:52:39	ProcessExecutor	sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
Jun 03, 2026 7:52:39 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Wed Jun 03 19:52:39 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE aih-tih-sc-1274d4-R1_A23YTGFLT4_1_collectinsertsize.pdf --INPUT aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-1274d4-R1_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Wed Jun 03 19:52:39 GMT 2026] Executing as ?@nf-e5d855f626b6be6785055a2f37afbbfe-a8fd3-gvk4h on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
INFO	2026-06-03 19:52:41	SinglePassSamProgram	Processed     1,000,000 records.  Elapsed time: 00:00:02s.  Time for last 1,000,000:    2s.  Last read position: chr1:1,387,788
INFO	2026-06-03 19:52:43	SinglePassSamProgram	Processed     2,000,000 records.  Elapsed time: 00:00:03s.  Time for last 1,000,000:    1s.  Last read position: chr1:5,961,895
INFO	2026-06-03 19:52:44	SinglePassSamProgram	Processed     3,000,000 records.  Elapsed time: 00:00:05s.  Time for last 1,000,000:    1s.  Last read position: chr1:9,755,092
INFO	2026-06-03 19:52:46	SinglePassSamProgram	Processed     4,000,000 records.  Elapsed time: 00:00:06s.  Time for last 1,000,000:    1s.  Last read position: chr1:12,319,525
INFO	2026-06-03 19:52:47	SinglePassSamProgram	Processed     5,000,000 records.  Elapsed time: 00:00:08s.  Time for last 1,000,000:    1s.  Last read position: chr1:16,633,133
INFO	2026-06-03 19:52:49	SinglePassSamProgram	Processed     6,000,000 records.  Elapsed time: 00:00:10s.  Time for last 1,000,000:    1s.  Last read position: chr1:19,683,191
INFO	2026-06-03 19:52:51	SinglePassSamProgram	Processed     7,000,000 records.  Elapsed time: 00:00:12s.  Time for last 1,000,000:    1s.  Last read position: chr1:21,872,301
INFO	2026-06-03 19:52:53	SinglePassSamProgram	Processed     8,000,000 records.  Elapsed time: 00:00:13s.  Time for last 1,000,000:    1s.  Last read position: chr1:22,661,318
INFO	2026-06-03 19:52:55	SinglePassSamProgram	Processed     9,000,000 records.  Elapsed time: 00:00:15s.  Time for last 1,000,000:    1s.  Last read position: chr1:26,280,158
INFO	2026-06-03 19:52:56	SinglePassSamProgram	Processed    10,000,000 records.  Elapsed time: 00:00:17s.  Time for last 1,000,000:    1s.  Last read position: chr1:27,882,915
INFO	2026-06-03 19:52:58	SinglePassSamProgram	Processed    11,000,000 records.  Elapsed time: 00:00:19s.  Time for last 1,000,000:    1s.  Last read position: chr1:32,014,319
INFO	2026-06-03 19:53:00	SinglePassSamProgram	Processed    12,000,000 records.  Elapsed time: 00:00:20s.  Time for last 1,000,000:    1s.  Last read position: chr1:35,192,701
INFO	2026-06-03 19:53:02	SinglePassSamProgram	Processed    13,000,000 records.  Elapsed time: 00:00:23s.  Time for last 1,000,000:    2s.  Last read position: chr1:39,285,163
INFO	2026-06-03 19:53:04	SinglePassSamProgram	Processed    14,000,000 records.  Elapsed time: 00:00:25s.  Time for last 1,000,000:    2s.  Last read position: chr1:40,069,833
INFO	2026-06-03 19:53:06	SinglePassSamProgram	Processed    15,000,000 records.  Elapsed time: 00:00:27s.  Time for last 1,000,000:    1s.  Last read position: chr1:43,620,124
INFO	2026-06-03 19:53:08	SinglePassSamProgram	Processed    16,000,000 records.  Elapsed time: 00:00:29s.  Time for last 1,000,000:    1s.  Last read position: chr1:47,281,073
INFO	2026-06-03 19:53:10	SinglePassSamProgram	Processed    17,000,000 records.  Elapsed time: 00:00:31s.  Time for last 1,000,000:    1s.  Last read position: chr1:55,081,356
INFO	2026-06-03 19:53:12	SinglePassSamProgram	Processed    18,000,000 records.  Elapsed time: 00:00:32s.  Time for last 1,000,000:    1s.  Last read position: chr1:70,305,896
INFO	2026-06-03 19:53:13	SinglePassSamProgram	Processed    19,000,000 records.  Elapsed time: 00:00:34s.  Time for last 1,000,000:    1s.  Last read position: chr1:89,056,118
INFO	2026-06-03 19:53:15	SinglePassSamProgram	Processed    20,000,000 records.  Elapsed time: 00:00:35s.  Time for last 1,000,000:    1s.  Last read position: chr1:94,903,473
INFO	2026-06-03 19:53:16	SinglePassSamProgram	Processed    21,000,000 records.  Elapsed time: 00:00:37s.  Time for last 1,000,000:    1s.  Last read position: chr1:109,252,824
INFO	2026-06-03 19:53:18	SinglePassSamProgram	Processed    22,000,000 records.  Elapsed time: 00:00:39s.  Time for last 1,000,000:    1s.  Last read position: chr1:112,667,092
INFO	2026-06-03 19:53:20	SinglePassSamProgram	Processed    23,000,000 records.  Elapsed time: 00:00:40s.  Time for last 1,000,000:    1s.  Last read position: chr1:116,392,965
INFO	2026-06-03 19:53:21	SinglePassSamProgram	Processed    24,000,000 records.  Elapsed time: 00:00:42s.  Time for last 1,000,000:    1s.  Last read position: chr1:119,953,569
INFO	2026-06-03 19:53:23	SinglePassSamProgram	Processed    25,000,000 records.  Elapsed time: 00:00:44s.  Time for last 1,000,000:    1s.  Last read position: chr1:143,419,625
INFO	2026-06-03 19:53:25	SinglePassSamProgram	Processed    26,000,000 records.  Elapsed time: 00:00:45s.  Time for last 1,000,000:    1s.  Last read position: chr1:146,133,686
INFO	2026-06-03 19:53:26	SinglePassSamProgram	Processed    27,000,000 records.  Elapsed time: 00:00:47s.  Time for last 1,000,000:    1s.  Last read position: chr1:148,555,080
INFO	2026-06-03 19:53:28	SinglePassSamProgram	Processed    28,000,000 records.  Elapsed time: 00:00:48s.  Time for last 1,000,000:    1s.  Last read position: chr1:149,486,134
INFO	2026-06-03 19:53:29	SinglePassSamProgram	Processed    29,000,000 records.  Elapsed time: 00:00:50s.  Time for last 1,000,000:    1s.  Last read position: chr1:150,333,108
INFO	2026-06-03 19:53:31	SinglePassSamProgram	Processed    30,000,000 records.  Elapsed time: 00:00:52s.  Time for last 1,000,000:    1s.  Last read position: chr1:151,266,332
INFO	2026-06-03 19:53:33	SinglePassSamProgram	Processed    31,000,000 records.  Elapsed time: 00:00:53s.  Time for last 1,000,000:    1s.  Last read position: chr1:153,932,664
INFO	2026-06-03 19:53:34	SinglePassSamProgram	Processed    32,000,000 records.  Elapsed time: 00:00:55s.  Time for last 1,000,000:    1s.  Last read position: chr1:154,183,000
INFO	2026-06-03 19:53:36	SinglePassSamProgram	Processed    33,000,000 records.  Elapsed time: 00:00:57s.  Time for last 1,000,000:    1s.  Last read position: chr1:154,970,363
INFO	2026-06-03 19:53:38	SinglePassSamProgram	Processed    34,000,000 records.  Elapsed time: 00:00:58s.  Time for last 1,000,000:    1s.  Last read position: chr1:155,668,671
INFO	2026-06-03 19:53:39	SinglePassSamProgram	Processed    35,000,000 records.  Elapsed time: 00:01:00s.  Time for last 1,000,000:    1s.  Last read position: chr1:156,248,526
INFO	2026-06-03 19:53:41	SinglePassSamProgram	Processed    36,000,000 records.  Elapsed time: 00:01:01s.  Time for last 1,000,000:    1s.  Last read position: chr1:159,052,000
INFO	2026-06-03 19:53:42	SinglePassSamProgram	Processed    37,000,000 records.  Elapsed time: 00:01:03s.  Time for last 1,000,000:    1s.  Last read position: chr1:161,051,435
INFO	2026-06-03 19:53:44	SinglePassSamProgram	Processed    38,000,000 records.  Elapsed time: 00:01:05s.  Time for last 1,000,000:    1s.  Last read position: chr1:164,559,981
INFO	2026-06-03 19:53:46	SinglePassSamProgram	Processed    39,000,000 records.  Elapsed time: 00:01:06s.  Time for last 1,000,000:    1s.  Last read position: chr1:171,541,689
INFO	2026-06-03 19:53:47	SinglePassSamProgram	Processed    40,000,000 records.  Elapsed time: 00:01:08s.  Time for last 1,000,000:    1s.  Last read position: chr1:179,652,169
INFO	2026-06-03 19:53:49	SinglePassSamProgram	Processed    41,000,000 records.  Elapsed time: 00:01:09s.  Time for last 1,000,000:    1s.  Last read position: chr1:185,299,731
INFO	2026-06-03 19:53:50	SinglePassSamProgram	Processed    42,000,000 records.  Elapsed time: 00:01:11s.  Time for last 1,000,000:    1s.  Last read position: chr1:196,736,853
INFO	2026-06-03 19:53:52	SinglePassSamProgram	Processed    43,000,000 records.  Elapsed time: 00:01:13s.  Time for last 1,000,000:    1s.  Last read position: chr1:201,946,179
INFO	2026-06-03 19:53:54	SinglePassSamProgram	Processed    44,000,000 records.  Elapsed time: 00:01:14s.  Time for last 1,000,000:    1s.  Last read position: chr1:204,469,579
INFO	2026-06-03 19:53:55	SinglePassSamProgram	Processed    45,000,000 records.  Elapsed time: 00:01:16s.  Time for last 1,000,000:    1s.  Last read position: chr1:207,887,074
INFO	2026-06-03 19:53:57	SinglePassSamProgram	Processed    46,000,000 records.  Elapsed time: 00:01:18s.  Time for last 1,000,000:    1s.  Last read position: chr1:222,629,311
INFO	2026-06-03 19:53:59	SinglePassSamProgram	Processed    47,000,000 records.  Elapsed time: 00:01:19s.  Time for last 1,000,000:    1s.  Last read position: chr1:226,071,719
INFO	2026-06-03 19:54:01	SinglePassSamProgram	Processed    48,000,000 records.  Elapsed time: 00:01:21s.  Time for last 1,000,000:    1s.  Last read position: chr1:230,787,512
INFO	2026-06-03 19:54:02	SinglePassSamProgram	Processed    49,000,000 records.  Elapsed time: 00:01:23s.  Time for last 1,000,000:    1s.  Last read position: chr1:236,142,755
INFO	2026-06-03 19:54:04	SinglePassSamProgram	Processed    50,000,000 records.  Elapsed time: 00:01:24s.  Time for last 1,000,000:    1s.  Last read position: chr1:246,916,280
INFO	2026-06-03 19:54:05	SinglePassSamProgram	Processed    51,000,000 records.  Elapsed time: 00:01:25s.  Time for last 1,000,000:    1s.  Last read position: chr2:9,913,129
INFO	2026-06-03 19:54:06	SinglePassSamProgram	Processed    52,000,000 records.  Elapsed time: 00:01:27s.  Time for last 1,000,000:    1s.  Last read position: chr2:20,311,551
INFO	2026-06-03 19:54:08	SinglePassSamProgram	Processed    53,000,000 records.  Elapsed time: 00:01:29s.  Time for last 1,000,000:    1s.  Last read position: chr2:26,284,139
INFO	2026-06-03 19:54:10	SinglePassSamProgram	Processed    54,000,000 records.  Elapsed time: 00:01:30s.  Time for last 1,000,000:    1s.  Last read position: chr2:28,241,321
INFO	2026-06-03 19:54:11	SinglePassSamProgram	Processed    55,000,000 records.  Elapsed time: 00:01:32s.  Time for last 1,000,000:    1s.  Last read position: chr2:32,916,254
INFO	2026-06-03 19:54:13	SinglePassSamProgram	Processed    56,000,000 records.  Elapsed time: 00:01:34s.  Time for last 1,000,000:    1s.  Last read position: chr2:32,916,264
INFO	2026-06-03 19:54:15	SinglePassSamProgram	Processed    57,000,000 records.  Elapsed time: 00:01:35s.  Time for last 1,000,000:    1s.  Last read position: chr2:32,916,406
INFO	2026-06-03 19:54:16	SinglePassSamProgram	Processed    58,000,000 records.  Elapsed time: 00:01:37s.  Time for last 1,000,000:    1s.  Last read position: chr2:37,237,775
INFO	2026-06-03 19:54:18	SinglePassSamProgram	Processed    59,000,000 records.  Elapsed time: 00:01:39s.  Time for last 1,000,000:    2s.  Last read position: chr2:43,230,984
INFO	2026-06-03 19:54:20	SinglePassSamProgram	Processed    60,000,000 records.  Elapsed time: 00:01:41s.  Time for last 1,000,000:    1s.  Last read position: chr2:47,813,789
INFO	2026-06-03 19:54:22	SinglePassSamProgram	Processed    61,000,000 records.  Elapsed time: 00:01:42s.  Time for last 1,000,000:    1s.  Last read position: chr2:55,598,869
INFO	2026-06-03 19:54:23	SinglePassSamProgram	Processed    62,000,000 records.  Elapsed time: 00:01:44s.  Time for last 1,000,000:    1s.  Last read position: chr2:64,636,815
INFO	2026-06-03 19:54:25	SinglePassSamProgram	Processed    63,000,000 records.  Elapsed time: 00:01:45s.  Time for last 1,000,000:    1s.  Last read position: chr2:71,072,640
INFO	2026-06-03 19:54:26	SinglePassSamProgram	Processed    64,000,000 records.  Elapsed time: 00:01:47s.  Time for last 1,000,000:    1s.  Last read position: chr2:74,457,463
INFO	2026-06-03 19:54:28	SinglePassSamProgram	Processed    65,000,000 records.  Elapsed time: 00:01:49s.  Time for last 1,000,000:    1s.  Last read position: chr2:85,840,185
INFO	2026-06-03 19:54:29	SinglePassSamProgram	Processed    66,000,000 records.  Elapsed time: 00:01:50s.  Time for last 1,000,000:    1s.  Last read position: chr2:88,857,302
INFO	2026-06-03 19:54:31	SinglePassSamProgram	Processed    67,000,000 records.  Elapsed time: 00:01:52s.  Time for last 1,000,000:    1s.  Last read position: chr2:96,612,816
INFO	2026-06-03 19:54:33	SinglePassSamProgram	Processed    68,000,000 records.  Elapsed time: 00:01:53s.  Time for last 1,000,000:    1s.  Last read position: chr2:99,449,381
INFO	2026-06-03 19:54:35	SinglePassSamProgram	Processed    69,000,000 records.  Elapsed time: 00:01:55s.  Time for last 1,000,000:    1s.  Last read position: chr2:108,672,930
INFO	2026-06-03 19:54:36	SinglePassSamProgram	Processed    70,000,000 records.  Elapsed time: 00:01:57s.  Time for last 1,000,000:    1s.  Last read position: chr2:109,836,150
INFO	2026-06-03 19:54:38	SinglePassSamProgram	Processed    71,000,000 records.  Elapsed time: 00:01:58s.  Time for last 1,000,000:    1s.  Last read position: chr2:112,417,258
INFO	2026-06-03 19:54:39	SinglePassSamProgram	Processed    72,000,000 records.  Elapsed time: 00:01:59s.  Time for last 1,000,000:    1s.  Last read position: chr2:127,288,679
INFO	2026-06-03 19:54:40	SinglePassSamProgram	Processed    73,000,000 records.  Elapsed time: 00:02:01s.  Time for last 1,000,000:    1s.  Last read position: chr2:131,592,015
INFO	2026-06-03 19:54:42	SinglePassSamProgram	Processed    74,000,000 records.  Elapsed time: 00:02:02s.  Time for last 1,000,000:    1s.  Last read position: chr2:151,271,683
INFO	2026-06-03 19:54:44	SinglePassSamProgram	Processed    75,000,000 records.  Elapsed time: 00:02:04s.  Time for last 1,000,000:    1s.  Last read position: chr2:161,507,388
INFO	2026-06-03 19:54:45	SinglePassSamProgram	Processed    76,000,000 records.  Elapsed time: 00:02:06s.  Time for last 1,000,000:    1s.  Last read position: chr2:174,481,754
INFO	2026-06-03 19:54:47	SinglePassSamProgram	Processed    77,000,000 records.  Elapsed time: 00:02:07s.  Time for last 1,000,000:    1s.  Last read position: chr2:178,651,959
INFO	2026-06-03 19:54:48	SinglePassSamProgram	Processed    78,000,000 records.  Elapsed time: 00:02:08s.  Time for last 1,000,000:    1s.  Last read position: chr2:188,987,088
INFO	2026-06-03 19:54:49	SinglePassSamProgram	Processed    79,000,000 records.  Elapsed time: 00:02:10s.  Time for last 1,000,000:    1s.  Last read position: chr2:189,110,378
INFO	2026-06-03 19:54:51	SinglePassSamProgram	Processed    80,000,000 records.  Elapsed time: 00:02:11s.  Time for last 1,000,000:    1s.  Last read position: chr2:196,343,690
INFO	2026-06-03 19:54:52	SinglePassSamProgram	Processed    81,000,000 records.  Elapsed time: 00:02:12s.  Time for last 1,000,000:    1s.  Last read position: chr2:201,479,971
INFO	2026-06-03 19:54:53	SinglePassSamProgram	Processed    82,000,000 records.  Elapsed time: 00:02:14s.  Time for last 1,000,000:    1s.  Last read position: chr2:210,098,091
INFO	2026-06-03 19:54:55	SinglePassSamProgram	Processed    83,000,000 records.  Elapsed time: 00:02:15s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,367,953
INFO	2026-06-03 19:54:56	SinglePassSamProgram	Processed    84,000,000 records.  Elapsed time: 00:02:16s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,372,359
INFO	2026-06-03 19:54:57	SinglePassSamProgram	Processed    85,000,000 records.  Elapsed time: 00:02:18s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,379,167
INFO	2026-06-03 19:54:59	SinglePassSamProgram	Processed    86,000,000 records.  Elapsed time: 00:02:20s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,386,747
INFO	2026-06-03 19:55:01	SinglePassSamProgram	Processed    87,000,000 records.  Elapsed time: 00:02:21s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,397,791
INFO	2026-06-03 19:55:02	SinglePassSamProgram	Processed    88,000,000 records.  Elapsed time: 00:02:23s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,408,299
INFO	2026-06-03 19:55:04	SinglePassSamProgram	Processed    89,000,000 records.  Elapsed time: 00:02:24s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,422,185
INFO	2026-06-03 19:55:05	SinglePassSamProgram	Processed    90,000,000 records.  Elapsed time: 00:02:25s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,433,343
INFO	2026-06-03 19:55:06	SinglePassSamProgram	Processed    91,000,000 records.  Elapsed time: 00:02:27s.  Time for last 1,000,000:    1s.  Last read position: chr2:218,238,835
INFO	2026-06-03 19:55:08	SinglePassSamProgram	Processed    92,000,000 records.  Elapsed time: 00:02:28s.  Time for last 1,000,000:    1s.  Last read position: chr2:222,922,720
INFO	2026-06-03 19:55:09	SinglePassSamProgram	Processed    93,000,000 records.  Elapsed time: 00:02:30s.  Time for last 1,000,000:    1s.  Last read position: chr2:230,503,099
INFO	2026-06-03 19:55:11	SinglePassSamProgram	Processed    94,000,000 records.  Elapsed time: 00:02:31s.  Time for last 1,000,000:    1s.  Last read position: chr2:234,496,268
INFO	2026-06-03 19:55:12	SinglePassSamProgram	Processed    95,000,000 records.  Elapsed time: 00:02:32s.  Time for last 1,000,000:    1s.  Last read position: chr2:237,368,607
INFO	2026-06-03 19:55:13	SinglePassSamProgram	Processed    96,000,000 records.  Elapsed time: 00:02:34s.  Time for last 1,000,000:    1s.  Last read position: chr2:238,091,510
INFO	2026-06-03 19:55:15	SinglePassSamProgram	Processed    97,000,000 records.  Elapsed time: 00:02:35s.  Time for last 1,000,000:    1s.  Last read position: chr2:241,670,747
INFO	2026-06-03 19:55:16	SinglePassSamProgram	Processed    98,000,000 records.  Elapsed time: 00:02:36s.  Time for last 1,000,000:    1s.  Last read position: chr3:9,893,158
INFO	2026-06-03 19:55:18	SinglePassSamProgram	Processed    99,000,000 records.  Elapsed time: 00:02:38s.  Time for last 1,000,000:    1s.  Last read position: chr3:13,397,392
INFO	2026-06-03 19:55:19	SinglePassSamProgram	Processed   100,000,000 records.  Elapsed time: 00:02:40s.  Time for last 1,000,000:    1s.  Last read position: chr3:21,497,097
INFO	2026-06-03 19:55:21	SinglePassSamProgram	Processed   101,000,000 records.  Elapsed time: 00:02:42s.  Time for last 1,000,000:    1s.  Last read position: chr3:33,828,873
INFO	2026-06-03 19:55:23	SinglePassSamProgram	Processed   102,000,000 records.  Elapsed time: 00:02:43s.  Time for last 1,000,000:    1s.  Last read position: chr3:39,411,934
INFO	2026-06-03 19:55:24	SinglePassSamProgram	Processed   103,000,000 records.  Elapsed time: 00:02:44s.  Time for last 1,000,000:    1s.  Last read position: chr3:44,989,162
INFO	2026-06-03 19:55:25	SinglePassSamProgram	Processed   104,000,000 records.  Elapsed time: 00:02:46s.  Time for last 1,000,000:    1s.  Last read position: chr3:47,122,306
INFO	2026-06-03 19:55:27	SinglePassSamProgram	Processed   105,000,000 records.  Elapsed time: 00:02:47s.  Time for last 1,000,000:    1s.  Last read position: chr3:48,469,098
INFO	2026-06-03 19:55:28	SinglePassSamProgram	Processed   106,000,000 records.  Elapsed time: 00:02:48s.  Time for last 1,000,000:    1s.  Last read position: chr3:49,057,093
INFO	2026-06-03 19:55:30	SinglePassSamProgram	Processed   107,000,000 records.  Elapsed time: 00:02:50s.  Time for last 1,000,000:    1s.  Last read position: chr3:49,706,028
INFO	2026-06-03 19:55:31	SinglePassSamProgram	Processed   108,000,000 records.  Elapsed time: 00:02:52s.  Time for last 1,000,000:    1s.  Last read position: chr3:51,393,386
INFO	2026-06-03 19:55:33	SinglePassSamProgram	Processed   109,000,000 records.  Elapsed time: 00:02:53s.  Time for last 1,000,000:    1s.  Last read position: chr3:52,561,787
INFO	2026-06-03 19:55:35	SinglePassSamProgram	Processed   110,000,000 records.  Elapsed time: 00:02:55s.  Time for last 1,000,000:    1s.  Last read position: chr3:58,078,787
INFO	2026-06-03 19:55:37	SinglePassSamProgram	Processed   111,000,000 records.  Elapsed time: 00:02:57s.  Time for last 1,000,000:    1s.  Last read position: chr3:68,636,592
INFO	2026-06-03 19:55:38	SinglePassSamProgram	Processed   112,000,000 records.  Elapsed time: 00:02:59s.  Time for last 1,000,000:    1s.  Last read position: chr3:99,850,463
INFO	2026-06-03 19:55:40	SinglePassSamProgram	Processed   113,000,000 records.  Elapsed time: 00:03:01s.  Time for last 1,000,000:    1s.  Last read position: chr3:111,913,376
INFO	2026-06-03 19:55:42	SinglePassSamProgram	Processed   114,000,000 records.  Elapsed time: 00:03:03s.  Time for last 1,000,000:    1s.  Last read position: chr3:119,587,567
INFO	2026-06-03 19:55:44	SinglePassSamProgram	Processed   115,000,000 records.  Elapsed time: 00:03:04s.  Time for last 1,000,000:    1s.  Last read position: chr3:122,700,217
INFO	2026-06-03 19:55:45	SinglePassSamProgram	Processed   116,000,000 records.  Elapsed time: 00:03:05s.  Time for last 1,000,000:    1s.  Last read position: chr3:126,727,110
INFO	2026-06-03 19:55:47	SinglePassSamProgram	Processed   117,000,000 records.  Elapsed time: 00:03:07s.  Time for last 1,000,000:    1s.  Last read position: chr3:129,556,405
INFO	2026-06-03 19:55:48	SinglePassSamProgram	Processed   118,000,000 records.  Elapsed time: 00:03:08s.  Time for last 1,000,000:    1s.  Last read position: chr3:136,195,021
INFO	2026-06-03 19:55:50	SinglePassSamProgram	Processed   119,000,000 records.  Elapsed time: 00:03:10s.  Time for last 1,000,000:    1s.  Last read position: chr3:146,517,066
INFO	2026-06-03 19:55:51	SinglePassSamProgram	Processed   120,000,000 records.  Elapsed time: 00:03:12s.  Time for last 1,000,000:    1s.  Last read position: chr3:148,857,466
INFO	2026-06-03 19:55:53	SinglePassSamProgram	Processed   121,000,000 records.  Elapsed time: 00:03:13s.  Time for last 1,000,000:    1s.  Last read position: chr3:156,554,970
INFO	2026-06-03 19:55:54	SinglePassSamProgram	Processed   122,000,000 records.  Elapsed time: 00:03:15s.  Time for last 1,000,000:    1s.  Last read position: chr3:172,247,753
INFO	2026-06-03 19:55:56	SinglePassSamProgram	Processed   123,000,000 records.  Elapsed time: 00:03:17s.  Time for last 1,000,000:    1s.  Last read position: chr3:184,166,615
INFO	2026-06-03 19:55:58	SinglePassSamProgram	Processed   124,000,000 records.  Elapsed time: 00:03:19s.  Time for last 1,000,000:    1s.  Last read position: chr3:187,043,066
INFO	2026-06-03 19:55:59	SinglePassSamProgram	Processed   125,000,000 records.  Elapsed time: 00:03:20s.  Time for last 1,000,000:    1s.  Last read position: chr3:195,866,975
INFO	2026-06-03 19:56:00	SinglePassSamProgram	Processed   126,000,000 records.  Elapsed time: 00:03:21s.  Time for last 1,000,000:    1s.  Last read position: chr4:792,440
INFO	2026-06-03 19:56:02	SinglePassSamProgram	Processed   127,000,000 records.  Elapsed time: 00:03:22s.  Time for last 1,000,000:    1s.  Last read position: chr4:2,716,022
INFO	2026-06-03 19:56:03	SinglePassSamProgram	Processed   128,000,000 records.  Elapsed time: 00:03:24s.  Time for last 1,000,000:    1s.  Last read position: chr4:7,816,049
INFO	2026-06-03 19:56:05	SinglePassSamProgram	Processed   129,000,000 records.  Elapsed time: 00:03:25s.  Time for last 1,000,000:    1s.  Last read position: chr4:25,234,228
INFO	2026-06-03 19:56:06	SinglePassSamProgram	Processed   130,000,000 records.  Elapsed time: 00:03:26s.  Time for last 1,000,000:    1s.  Last read position: chr4:41,100,721
INFO	2026-06-03 19:56:08	SinglePassSamProgram	Processed   131,000,000 records.  Elapsed time: 00:03:28s.  Time for last 1,000,000:    2s.  Last read position: chr4:56,486,360
INFO	2026-06-03 19:56:09	SinglePassSamProgram	Processed   132,000,000 records.  Elapsed time: 00:03:30s.  Time for last 1,000,000:    1s.  Last read position: chr4:75,012,917
INFO	2026-06-03 19:56:11	SinglePassSamProgram	Processed   133,000,000 records.  Elapsed time: 00:03:32s.  Time for last 1,000,000:    1s.  Last read position: chr4:77,066,249
INFO	2026-06-03 19:56:13	SinglePassSamProgram	Processed   134,000,000 records.  Elapsed time: 00:03:33s.  Time for last 1,000,000:    1s.  Last read position: chr4:87,457,903
INFO	2026-06-03 19:56:15	SinglePassSamProgram	Processed   135,000,000 records.  Elapsed time: 00:03:35s.  Time for last 1,000,000:    2s.  Last read position: chr4:102,802,596
INFO	2026-06-03 19:56:16	SinglePassSamProgram	Processed   136,000,000 records.  Elapsed time: 00:03:37s.  Time for last 1,000,000:    1s.  Last read position: chr4:119,502,642
INFO	2026-06-03 19:56:18	SinglePassSamProgram	Processed   137,000,000 records.  Elapsed time: 00:03:38s.  Time for last 1,000,000:    1s.  Last read position: chr4:140,622,835
INFO	2026-06-03 19:56:19	SinglePassSamProgram	Processed   138,000,000 records.  Elapsed time: 00:03:39s.  Time for last 1,000,000:    1s.  Last read position: chr4:151,174,894
INFO	2026-06-03 19:56:20	SinglePassSamProgram	Processed   139,000,000 records.  Elapsed time: 00:03:41s.  Time for last 1,000,000:    1s.  Last read position: chr4:168,878,252
INFO	2026-06-03 19:56:22	SinglePassSamProgram	Processed   140,000,000 records.  Elapsed time: 00:03:42s.  Time for last 1,000,000:    1s.  Last read position: chr5:891,155
INFO	2026-06-03 19:56:23	SinglePassSamProgram	Processed   141,000,000 records.  Elapsed time: 00:03:44s.  Time for last 1,000,000:    1s.  Last read position: chr5:14,374,255
INFO	2026-06-03 19:56:25	SinglePassSamProgram	Processed   142,000,000 records.  Elapsed time: 00:03:45s.  Time for last 1,000,000:    1s.  Last read position: chr5:32,599,039
INFO	2026-06-03 19:56:26	SinglePassSamProgram	Processed   143,000,000 records.  Elapsed time: 00:03:47s.  Time for last 1,000,000:    1s.  Last read position: chr5:39,202,700
INFO	2026-06-03 19:56:28	SinglePassSamProgram	Processed   144,000,000 records.  Elapsed time: 00:03:49s.  Time for last 1,000,000:    1s.  Last read position: chr5:55,941,141
INFO	2026-06-03 19:56:30	SinglePassSamProgram	Processed   145,000,000 records.  Elapsed time: 00:03:50s.  Time for last 1,000,000:    1s.  Last read position: chr5:67,184,486
INFO	2026-06-03 19:56:31	SinglePassSamProgram	Processed   146,000,000 records.  Elapsed time: 00:03:52s.  Time for last 1,000,000:    1s.  Last read position: chr5:71,632,153
INFO	2026-06-03 19:56:32	SinglePassSamProgram	Processed   147,000,000 records.  Elapsed time: 00:03:53s.  Time for last 1,000,000:    1s.  Last read position: chr5:78,421,801
INFO	2026-06-03 19:56:34	SinglePassSamProgram	Processed   148,000,000 records.  Elapsed time: 00:03:54s.  Time for last 1,000,000:    1s.  Last read position: chr5:83,538,835
INFO	2026-06-03 19:56:35	SinglePassSamProgram	Processed   149,000,000 records.  Elapsed time: 00:03:56s.  Time for last 1,000,000:    1s.  Last read position: chr5:95,731,671
INFO	2026-06-03 19:56:36	SinglePassSamProgram	Processed   150,000,000 records.  Elapsed time: 00:03:57s.  Time for last 1,000,000:    1s.  Last read position: chr5:112,864,798
INFO	2026-06-03 19:56:37	SinglePassSamProgram	Processed   151,000,000 records.  Elapsed time: 00:03:58s.  Time for last 1,000,000:    1s.  Last read position: chr5:131,439,620
INFO	2026-06-03 19:56:39	SinglePassSamProgram	Processed   152,000,000 records.  Elapsed time: 00:04:00s.  Time for last 1,000,000:    1s.  Last read position: chr5:134,811,825
INFO	2026-06-03 19:56:41	SinglePassSamProgram	Processed   153,000,000 records.  Elapsed time: 00:04:01s.  Time for last 1,000,000:    1s.  Last read position: chr5:139,307,898
INFO	2026-06-03 19:56:42	SinglePassSamProgram	Processed   154,000,000 records.  Elapsed time: 00:04:03s.  Time for last 1,000,000:    1s.  Last read position: chr5:141,246,954
INFO	2026-06-03 19:56:43	SinglePassSamProgram	Processed   155,000,000 records.  Elapsed time: 00:04:04s.  Time for last 1,000,000:    1s.  Last read position: chr5:146,459,166
INFO	2026-06-03 19:56:45	SinglePassSamProgram	Processed   156,000,000 records.  Elapsed time: 00:04:05s.  Time for last 1,000,000:    1s.  Last read position: chr5:150,134,860
INFO	2026-06-03 19:56:46	SinglePassSamProgram	Processed   157,000,000 records.  Elapsed time: 00:04:07s.  Time for last 1,000,000:    1s.  Last read position: chr5:150,402,601
INFO	2026-06-03 19:56:47	SinglePassSamProgram	Processed   158,000,000 records.  Elapsed time: 00:04:08s.  Time for last 1,000,000:    1s.  Last read position: chr5:150,405,117
INFO	2026-06-03 19:56:48	SinglePassSamProgram	Processed   159,000,000 records.  Elapsed time: 00:04:09s.  Time for last 1,000,000:    1s.  Last read position: chr5:150,407,246
INFO	2026-06-03 19:56:50	SinglePassSamProgram	Processed   160,000,000 records.  Elapsed time: 00:04:10s.  Time for last 1,000,000:    1s.  Last read position: chr5:151,664,157
INFO	2026-06-03 19:56:51	SinglePassSamProgram	Processed   161,000,000 records.  Elapsed time: 00:04:11s.  Time for last 1,000,000:    1s.  Last read position: chr5:168,244,587
INFO	2026-06-03 19:56:53	SinglePassSamProgram	Processed   162,000,000 records.  Elapsed time: 00:04:13s.  Time for last 1,000,000:    2s.  Last read position: chr5:171,910,753
INFO	2026-06-03 19:56:54	SinglePassSamProgram	Processed   163,000,000 records.  Elapsed time: 00:04:15s.  Time for last 1,000,000:    1s.  Last read position: chr5:177,307,583
INFO	2026-06-03 19:56:56	SinglePassSamProgram	Processed   164,000,000 records.  Elapsed time: 00:04:17s.  Time for last 1,000,000:    1s.  Last read position: chr5:179,618,308
INFO	2026-06-03 19:56:58	SinglePassSamProgram	Processed   165,000,000 records.  Elapsed time: 00:04:18s.  Time for last 1,000,000:    1s.  Last read position: chr5:179,836,648
INFO	2026-06-03 19:57:00	SinglePassSamProgram	Processed   166,000,000 records.  Elapsed time: 00:04:20s.  Time for last 1,000,000:    1s.  Last read position: chr6:3,225,287
INFO	2026-06-03 19:57:01	SinglePassSamProgram	Processed   167,000,000 records.  Elapsed time: 00:04:22s.  Time for last 1,000,000:    1s.  Last read position: chr6:12,120,283
INFO	2026-06-03 19:57:03	SinglePassSamProgram	Processed   168,000,000 records.  Elapsed time: 00:04:24s.  Time for last 1,000,000:    1s.  Last read position: chr6:25,610,105
INFO	2026-06-03 19:57:05	SinglePassSamProgram	Processed   169,000,000 records.  Elapsed time: 00:04:25s.  Time for last 1,000,000:    1s.  Last read position: chr6:27,866,952
INFO	2026-06-03 19:57:06	SinglePassSamProgram	Processed   170,000,000 records.  Elapsed time: 00:04:27s.  Time for last 1,000,000:    1s.  Last read position: chr6:30,490,459
INFO	2026-06-03 19:57:08	SinglePassSamProgram	Processed   171,000,000 records.  Elapsed time: 00:04:29s.  Time for last 1,000,000:    1s.  Last read position: chr6:31,271,838
INFO	2026-06-03 19:57:10	SinglePassSamProgram	Processed   172,000,000 records.  Elapsed time: 00:04:30s.  Time for last 1,000,000:    1s.  Last read position: chr6:31,660,057
INFO	2026-06-03 19:57:12	SinglePassSamProgram	Processed   173,000,000 records.  Elapsed time: 00:04:32s.  Time for last 1,000,000:    1s.  Last read position: chr6:31,943,913
INFO	2026-06-03 19:57:13	SinglePassSamProgram	Processed   174,000,000 records.  Elapsed time: 00:04:34s.  Time for last 1,000,000:    1s.  Last read position: chr6:32,179,908
INFO	2026-06-03 19:57:15	SinglePassSamProgram	Processed   175,000,000 records.  Elapsed time: 00:04:36s.  Time for last 1,000,000:    1s.  Last read position: chr6:32,850,375
INFO	2026-06-03 19:57:17	SinglePassSamProgram	Processed   176,000,000 records.  Elapsed time: 00:04:37s.  Time for last 1,000,000:    1s.  Last read position: chr6:33,277,750
INFO	2026-06-03 19:57:19	SinglePassSamProgram	Processed   177,000,000 records.  Elapsed time: 00:04:39s.  Time for last 1,000,000:    1s.  Last read position: chr6:34,288,802
INFO	2026-06-03 19:57:20	SinglePassSamProgram	Processed   178,000,000 records.  Elapsed time: 00:04:41s.  Time for last 1,000,000:    1s.  Last read position: chr6:38,152,297
INFO	2026-06-03 19:57:22	SinglePassSamProgram	Processed   179,000,000 records.  Elapsed time: 00:04:43s.  Time for last 1,000,000:    1s.  Last read position: chr6:43,339,768
INFO	2026-06-03 19:57:24	SinglePassSamProgram	Processed   180,000,000 records.  Elapsed time: 00:04:44s.  Time for last 1,000,000:    1s.  Last read position: chr6:53,012,198
INFO	2026-06-03 19:57:25	SinglePassSamProgram	Processed   181,000,000 records.  Elapsed time: 00:04:46s.  Time for last 1,000,000:    1s.  Last read position: chr6:73,471,494
INFO	2026-06-03 19:57:27	SinglePassSamProgram	Processed   182,000,000 records.  Elapsed time: 00:04:48s.  Time for last 1,000,000:    1s.  Last read position: chr6:85,427,596
INFO	2026-06-03 19:57:29	SinglePassSamProgram	Processed   183,000,000 records.  Elapsed time: 00:04:50s.  Time for last 1,000,000:    2s.  Last read position: chr6:99,551,879
INFO	2026-06-03 19:57:31	SinglePassSamProgram	Processed   184,000,000 records.  Elapsed time: 00:04:52s.  Time for last 1,000,000:    1s.  Last read position: chr6:112,148,239
INFO	2026-06-03 19:57:33	SinglePassSamProgram	Processed   185,000,000 records.  Elapsed time: 00:04:53s.  Time for last 1,000,000:    1s.  Last read position: chr6:128,929,444
INFO	2026-06-03 19:57:35	SinglePassSamProgram	Processed   186,000,000 records.  Elapsed time: 00:04:55s.  Time for last 1,000,000:    1s.  Last read position: chr6:138,430,516
INFO	2026-06-03 19:57:36	SinglePassSamProgram	Processed   187,000,000 records.  Elapsed time: 00:04:57s.  Time for last 1,000,000:    1s.  Last read position: chr6:149,409,575
INFO	2026-06-03 19:57:38	SinglePassSamProgram	Processed   188,000,000 records.  Elapsed time: 00:04:59s.  Time for last 1,000,000:    1s.  Last read position: chr6:154,824,243
INFO	2026-06-03 19:57:40	SinglePassSamProgram	Processed   189,000,000 records.  Elapsed time: 00:05:01s.  Time for last 1,000,000:    1s.  Last read position: chr6:159,041,443
INFO	2026-06-03 19:57:42	SinglePassSamProgram	Processed   190,000,000 records.  Elapsed time: 00:05:03s.  Time for last 1,000,000:    1s.  Last read position: chr6:168,549,175
INFO	2026-06-03 19:57:44	SinglePassSamProgram	Processed   191,000,000 records.  Elapsed time: 00:05:04s.  Time for last 1,000,000:    1s.  Last read position: chr7:1,497,228
INFO	2026-06-03 19:57:46	SinglePassSamProgram	Processed   192,000,000 records.  Elapsed time: 00:05:06s.  Time for last 1,000,000:    1s.  Last read position: chr7:5,315,983
INFO	2026-06-03 19:57:47	SinglePassSamProgram	Processed   193,000,000 records.  Elapsed time: 00:05:08s.  Time for last 1,000,000:    1s.  Last read position: chr7:5,528,496
INFO	2026-06-03 19:57:49	SinglePassSamProgram	Processed   194,000,000 records.  Elapsed time: 00:05:10s.  Time for last 1,000,000:    1s.  Last read position: chr7:6,600,019
INFO	2026-06-03 19:57:51	SinglePassSamProgram	Processed   195,000,000 records.  Elapsed time: 00:05:11s.  Time for last 1,000,000:    1s.  Last read position: chr7:26,185,027
INFO	2026-06-03 19:57:52	SinglePassSamProgram	Processed   196,000,000 records.  Elapsed time: 00:05:13s.  Time for last 1,000,000:    1s.  Last read position: chr7:36,894,861
INFO	2026-06-03 19:57:54	SinglePassSamProgram	Processed   197,000,000 records.  Elapsed time: 00:05:15s.  Time for last 1,000,000:    1s.  Last read position: chr7:44,110,080
INFO	2026-06-03 19:57:56	SinglePassSamProgram	Processed   198,000,000 records.  Elapsed time: 00:05:17s.  Time for last 1,000,000:    1s.  Last read position: chr7:47,424,155
INFO	2026-06-03 19:57:58	SinglePassSamProgram	Processed   199,000,000 records.  Elapsed time: 00:05:19s.  Time for last 1,000,000:    1s.  Last read position: chr7:70,764,834
INFO	2026-06-03 19:58:00	SinglePassSamProgram	Processed   200,000,000 records.  Elapsed time: 00:05:20s.  Time for last 1,000,000:    1s.  Last read position: chr7:73,769,335
INFO	2026-06-03 19:58:01	SinglePassSamProgram	Processed   201,000,000 records.  Elapsed time: 00:05:22s.  Time for last 1,000,000:    1s.  Last read position: chr7:75,421,889
INFO	2026-06-03 19:58:02	SinglePassSamProgram	Processed   202,000,000 records.  Elapsed time: 00:05:23s.  Time for last 1,000,000:    1s.  Last read position: chr7:76,978,608
INFO	2026-06-03 19:58:03	SinglePassSamProgram	Processed   203,000,000 records.  Elapsed time: 00:05:24s.  Time for last 1,000,000:    1s.  Last read position: chr7:92,022,988
INFO	2026-06-03 19:58:05	SinglePassSamProgram	Processed   204,000,000 records.  Elapsed time: 00:05:26s.  Time for last 1,000,000:    1s.  Last read position: chr7:94,407,874
INFO	2026-06-03 19:58:07	SinglePassSamProgram	Processed   205,000,000 records.  Elapsed time: 00:05:28s.  Time for last 1,000,000:    1s.  Last read position: chr7:98,890,384
INFO	2026-06-03 19:58:09	SinglePassSamProgram	Processed   206,000,000 records.  Elapsed time: 00:05:29s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,158,222
INFO	2026-06-03 19:58:10	SinglePassSamProgram	Processed   207,000,000 records.  Elapsed time: 00:05:31s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,999,144
INFO	2026-06-03 19:58:11	SinglePassSamProgram	Processed   208,000,000 records.  Elapsed time: 00:05:32s.  Time for last 1,000,000:    1s.  Last read position: chr7:102,659,770
INFO	2026-06-03 19:58:13	SinglePassSamProgram	Processed   209,000,000 records.  Elapsed time: 00:05:33s.  Time for last 1,000,000:    1s.  Last read position: chr7:108,182,907
INFO	2026-06-03 19:58:14	SinglePassSamProgram	Processed   210,000,000 records.  Elapsed time: 00:05:35s.  Time for last 1,000,000:    1s.  Last read position: chr7:127,990,969
INFO	2026-06-03 19:58:16	SinglePassSamProgram	Processed   211,000,000 records.  Elapsed time: 00:05:37s.  Time for last 1,000,000:    1s.  Last read position: chr7:134,958,227
INFO	2026-06-03 19:58:18	SinglePassSamProgram	Processed   212,000,000 records.  Elapsed time: 00:05:38s.  Time for last 1,000,000:    1s.  Last read position: chr7:139,716,726
INFO	2026-06-03 19:58:20	SinglePassSamProgram	Processed   213,000,000 records.  Elapsed time: 00:05:40s.  Time for last 1,000,000:    1s.  Last read position: chr7:143,390,573
INFO	2026-06-03 19:58:22	SinglePassSamProgram	Processed   214,000,000 records.  Elapsed time: 00:05:42s.  Time for last 1,000,000:    1s.  Last read position: chr7:150,284,803
INFO	2026-06-03 19:58:23	SinglePassSamProgram	Processed   215,000,000 records.  Elapsed time: 00:05:44s.  Time for last 1,000,000:    1s.  Last read position: chr7:151,490,958
INFO	2026-06-03 19:58:25	SinglePassSamProgram	Processed   216,000,000 records.  Elapsed time: 00:05:46s.  Time for last 1,000,000:    1s.  Last read position: chr7:158,934,207
INFO	2026-06-03 19:58:27	SinglePassSamProgram	Processed   217,000,000 records.  Elapsed time: 00:05:47s.  Time for last 1,000,000:    1s.  Last read position: chr8:17,543,655
INFO	2026-06-03 19:58:29	SinglePassSamProgram	Processed   218,000,000 records.  Elapsed time: 00:05:49s.  Time for last 1,000,000:    1s.  Last read position: chr8:22,606,998
INFO	2026-06-03 19:58:30	SinglePassSamProgram	Processed   219,000,000 records.  Elapsed time: 00:05:51s.  Time for last 1,000,000:    1s.  Last read position: chr8:27,658,913
INFO	2026-06-03 19:58:32	SinglePassSamProgram	Processed   220,000,000 records.  Elapsed time: 00:05:52s.  Time for last 1,000,000:    1s.  Last read position: chr8:38,253,627
INFO	2026-06-03 19:58:33	SinglePassSamProgram	Processed   221,000,000 records.  Elapsed time: 00:05:54s.  Time for last 1,000,000:    1s.  Last read position: chr8:41,509,654
INFO	2026-06-03 19:58:35	SinglePassSamProgram	Processed   222,000,000 records.  Elapsed time: 00:05:55s.  Time for last 1,000,000:    1s.  Last read position: chr8:53,841,610
INFO	2026-06-03 19:58:36	SinglePassSamProgram	Processed   223,000,000 records.  Elapsed time: 00:05:56s.  Time for last 1,000,000:    1s.  Last read position: chr8:67,343,193
INFO	2026-06-03 19:58:37	SinglePassSamProgram	Processed   224,000,000 records.  Elapsed time: 00:05:58s.  Time for last 1,000,000:    1s.  Last read position: chr8:84,911,764
INFO	2026-06-03 19:58:38	SinglePassSamProgram	Processed   225,000,000 records.  Elapsed time: 00:05:59s.  Time for last 1,000,000:    1s.  Last read position: chr8:98,950,707
INFO	2026-06-03 19:58:40	SinglePassSamProgram	Processed   226,000,000 records.  Elapsed time: 00:06:00s.  Time for last 1,000,000:    1s.  Last read position: chr8:103,140,896
INFO	2026-06-03 19:58:41	SinglePassSamProgram	Processed   227,000,000 records.  Elapsed time: 00:06:01s.  Time for last 1,000,000:    1s.  Last read position: chr8:123,254,409
INFO	2026-06-03 19:58:42	SinglePassSamProgram	Processed   228,000,000 records.  Elapsed time: 00:06:03s.  Time for last 1,000,000:    1s.  Last read position: chr8:140,451,043
INFO	2026-06-03 19:58:44	SinglePassSamProgram	Processed   229,000,000 records.  Elapsed time: 00:06:05s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,818,193
INFO	2026-06-03 19:58:46	SinglePassSamProgram	Processed   230,000,000 records.  Elapsed time: 00:06:06s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,862,751
INFO	2026-06-03 19:58:47	SinglePassSamProgram	Processed   231,000,000 records.  Elapsed time: 00:06:08s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,916,279
INFO	2026-06-03 19:58:49	SinglePassSamProgram	Processed   232,000,000 records.  Elapsed time: 00:06:09s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,938,230
INFO	2026-06-03 19:58:50	SinglePassSamProgram	Processed   233,000,000 records.  Elapsed time: 00:06:11s.  Time for last 1,000,000:    1s.  Last read position: chr8:144,501,149
INFO	2026-06-03 19:58:52	SinglePassSamProgram	Processed   234,000,000 records.  Elapsed time: 00:06:12s.  Time for last 1,000,000:    1s.  Last read position: chr9:5,769,021
INFO	2026-06-03 19:58:54	SinglePassSamProgram	Processed   235,000,000 records.  Elapsed time: 00:06:14s.  Time for last 1,000,000:    1s.  Last read position: chr9:19,378,896
INFO	2026-06-03 19:58:55	SinglePassSamProgram	Processed   236,000,000 records.  Elapsed time: 00:06:16s.  Time for last 1,000,000:    1s.  Last read position: chr9:34,489,384
INFO	2026-06-03 19:58:57	SinglePassSamProgram	Processed   237,000,000 records.  Elapsed time: 00:06:17s.  Time for last 1,000,000:    1s.  Last read position: chr9:35,714,812
INFO	2026-06-03 19:58:59	SinglePassSamProgram	Processed   238,000,000 records.  Elapsed time: 00:06:19s.  Time for last 1,000,000:    1s.  Last read position: chr9:68,303,290
INFO	2026-06-03 19:59:01	SinglePassSamProgram	Processed   239,000,000 records.  Elapsed time: 00:06:21s.  Time for last 1,000,000:    1s.  Last read position: chr9:84,745,054
INFO	2026-06-03 19:59:02	SinglePassSamProgram	Processed   240,000,000 records.  Elapsed time: 00:06:23s.  Time for last 1,000,000:    1s.  Last read position: chr9:93,084,536
INFO	2026-06-03 19:59:04	SinglePassSamProgram	Processed   241,000,000 records.  Elapsed time: 00:06:24s.  Time for last 1,000,000:    1s.  Last read position: chr9:99,129,003
INFO	2026-06-03 19:59:06	SinglePassSamProgram	Processed   242,000,000 records.  Elapsed time: 00:06:26s.  Time for last 1,000,000:    1s.  Last read position: chr9:111,420,067
INFO	2026-06-03 19:59:07	SinglePassSamProgram	Processed   243,000,000 records.  Elapsed time: 00:06:28s.  Time for last 1,000,000:    1s.  Last read position: chr9:114,423,363
INFO	2026-06-03 19:59:09	SinglePassSamProgram	Processed   244,000,000 records.  Elapsed time: 00:06:29s.  Time for last 1,000,000:    1s.  Last read position: chr9:121,302,010
INFO	2026-06-03 19:59:11	SinglePassSamProgram	Processed   245,000,000 records.  Elapsed time: 00:06:31s.  Time for last 1,000,000:    1s.  Last read position: chr9:125,239,467
INFO	2026-06-03 19:59:12	SinglePassSamProgram	Processed   246,000,000 records.  Elapsed time: 00:06:33s.  Time for last 1,000,000:    1s.  Last read position: chr9:128,105,782
INFO	2026-06-03 19:59:14	SinglePassSamProgram	Processed   247,000,000 records.  Elapsed time: 00:06:35s.  Time for last 1,000,000:    1s.  Last read position: chr9:128,908,299
INFO	2026-06-03 19:59:16	SinglePassSamProgram	Processed   248,000,000 records.  Elapsed time: 00:06:36s.  Time for last 1,000,000:    1s.  Last read position: chr9:130,884,348
INFO	2026-06-03 19:59:18	SinglePassSamProgram	Processed   249,000,000 records.  Elapsed time: 00:06:38s.  Time for last 1,000,000:    1s.  Last read position: chr9:132,402,558
INFO	2026-06-03 19:59:19	SinglePassSamProgram	Processed   250,000,000 records.  Elapsed time: 00:06:40s.  Time for last 1,000,000:    1s.  Last read position: chr9:134,774,886
INFO	2026-06-03 19:59:21	SinglePassSamProgram	Processed   251,000,000 records.  Elapsed time: 00:06:42s.  Time for last 1,000,000:    1s.  Last read position: chr9:136,496,291
INFO	2026-06-03 19:59:23	SinglePassSamProgram	Processed   252,000,000 records.  Elapsed time: 00:06:43s.  Time for last 1,000,000:    1s.  Last read position: chr9:137,113,206
INFO	2026-06-03 19:59:25	SinglePassSamProgram	Processed   253,000,000 records.  Elapsed time: 00:06:45s.  Time for last 1,000,000:    1s.  Last read position: chr10:836,402
INFO	2026-06-03 19:59:26	SinglePassSamProgram	Processed   254,000,000 records.  Elapsed time: 00:06:47s.  Time for last 1,000,000:    1s.  Last read position: chr10:7,284,132
INFO	2026-06-03 19:59:28	SinglePassSamProgram	Processed   255,000,000 records.  Elapsed time: 00:06:48s.  Time for last 1,000,000:    1s.  Last read position: chr10:17,229,381
INFO	2026-06-03 19:59:30	SinglePassSamProgram	Processed   256,000,000 records.  Elapsed time: 00:06:50s.  Time for last 1,000,000:    1s.  Last read position: chr10:26,500,929
INFO	2026-06-03 19:59:31	SinglePassSamProgram	Processed   257,000,000 records.  Elapsed time: 00:06:52s.  Time for last 1,000,000:    1s.  Last read position: chr10:32,018,536
INFO	2026-06-03 19:59:33	SinglePassSamProgram	Processed   258,000,000 records.  Elapsed time: 00:06:54s.  Time for last 1,000,000:    1s.  Last read position: chr10:37,169,701
INFO	2026-06-03 19:59:35	SinglePassSamProgram	Processed   259,000,000 records.  Elapsed time: 00:06:55s.  Time for last 1,000,000:    1s.  Last read position: chr10:45,719,860
INFO	2026-06-03 19:59:37	SinglePassSamProgram	Processed   260,000,000 records.  Elapsed time: 00:06:57s.  Time for last 1,000,000:    1s.  Last read position: chr10:49,046,983
INFO	2026-06-03 19:59:38	SinglePassSamProgram	Processed   261,000,000 records.  Elapsed time: 00:06:59s.  Time for last 1,000,000:    1s.  Last read position: chr10:63,222,408
INFO	2026-06-03 19:59:40	SinglePassSamProgram	Processed   262,000,000 records.  Elapsed time: 00:07:01s.  Time for last 1,000,000:    1s.  Last read position: chr10:72,063,133
INFO	2026-06-03 19:59:41	SinglePassSamProgram	Processed   263,000,000 records.  Elapsed time: 00:07:02s.  Time for last 1,000,000:    1s.  Last read position: chr10:74,975,411
INFO	2026-06-03 19:59:43	SinglePassSamProgram	Processed   264,000,000 records.  Elapsed time: 00:07:04s.  Time for last 1,000,000:    1s.  Last read position: chr10:84,373,684
INFO	2026-06-03 19:59:45	SinglePassSamProgram	Processed   265,000,000 records.  Elapsed time: 00:07:06s.  Time for last 1,000,000:    1s.  Last read position: chr10:89,402,402
INFO	2026-06-03 19:59:47	SinglePassSamProgram	Processed   266,000,000 records.  Elapsed time: 00:07:07s.  Time for last 1,000,000:    1s.  Last read position: chr10:95,872,871
INFO	2026-06-03 19:59:49	SinglePassSamProgram	Processed   267,000,000 records.  Elapsed time: 00:07:09s.  Time for last 1,000,000:    1s.  Last read position: chr10:100,516,842
INFO	2026-06-03 19:59:50	SinglePassSamProgram	Processed   268,000,000 records.  Elapsed time: 00:07:11s.  Time for last 1,000,000:    1s.  Last read position: chr10:102,572,732
INFO	2026-06-03 19:59:52	SinglePassSamProgram	Processed   269,000,000 records.  Elapsed time: 00:07:13s.  Time for last 1,000,000:    1s.  Last read position: chr10:113,876,821
INFO	2026-06-03 19:59:53	SinglePassSamProgram	Processed   270,000,000 records.  Elapsed time: 00:07:14s.  Time for last 1,000,000:    1s.  Last read position: chr10:121,564,505
INFO	2026-06-03 19:59:55	SinglePassSamProgram	Processed   271,000,000 records.  Elapsed time: 00:07:15s.  Time for last 1,000,000:    1s.  Last read position: chr10:130,169,455
INFO	2026-06-03 19:59:57	SinglePassSamProgram	Processed   272,000,000 records.  Elapsed time: 00:07:17s.  Time for last 1,000,000:    1s.  Last read position: chr11:319,795
INFO	2026-06-03 19:59:59	SinglePassSamProgram	Processed   273,000,000 records.  Elapsed time: 00:07:19s.  Time for last 1,000,000:    1s.  Last read position: chr11:770,994
INFO	2026-06-03 20:00:00	SinglePassSamProgram	Processed   274,000,000 records.  Elapsed time: 00:07:21s.  Time for last 1,000,000:    1s.  Last read position: chr11:1,243,685
INFO	2026-06-03 20:00:02	SinglePassSamProgram	Processed   275,000,000 records.  Elapsed time: 00:07:23s.  Time for last 1,000,000:    1s.  Last read position: chr11:1,247,359
INFO	2026-06-03 20:00:04	SinglePassSamProgram	Processed   276,000,000 records.  Elapsed time: 00:07:25s.  Time for last 1,000,000:    1s.  Last read position: chr11:1,251,355
INFO	2026-06-03 20:00:06	SinglePassSamProgram	Processed   277,000,000 records.  Elapsed time: 00:07:26s.  Time for last 1,000,000:    1s.  Last read position: chr11:3,744,608
INFO	2026-06-03 20:00:07	SinglePassSamProgram	Processed   278,000,000 records.  Elapsed time: 00:07:28s.  Time for last 1,000,000:    1s.  Last read position: chr11:7,509,910
INFO	2026-06-03 20:00:09	SinglePassSamProgram	Processed   279,000,000 records.  Elapsed time: 00:07:30s.  Time for last 1,000,000:    1s.  Last read position: chr11:11,621,411
INFO	2026-06-03 20:00:11	SinglePassSamProgram	Processed   280,000,000 records.  Elapsed time: 00:07:31s.  Time for last 1,000,000:    1s.  Last read position: chr11:20,045,251
INFO	2026-06-03 20:00:12	SinglePassSamProgram	Processed   281,000,000 records.  Elapsed time: 00:07:33s.  Time for last 1,000,000:    1s.  Last read position: chr11:43,391,547
INFO	2026-06-03 20:00:14	SinglePassSamProgram	Processed   282,000,000 records.  Elapsed time: 00:07:35s.  Time for last 1,000,000:    1s.  Last read position: chr11:47,173,426
INFO	2026-06-03 20:00:16	SinglePassSamProgram	Processed   283,000,000 records.  Elapsed time: 00:07:36s.  Time for last 1,000,000:    1s.  Last read position: chr11:57,543,181
INFO	2026-06-03 20:00:17	SinglePassSamProgram	Processed   284,000,000 records.  Elapsed time: 00:07:38s.  Time for last 1,000,000:    1s.  Last read position: chr11:59,787,120
INFO	2026-06-03 20:00:19	SinglePassSamProgram	Processed   285,000,000 records.  Elapsed time: 00:07:40s.  Time for last 1,000,000:    1s.  Last read position: chr11:61,891,189
INFO	2026-06-03 20:00:21	SinglePassSamProgram	Processed   286,000,000 records.  Elapsed time: 00:07:41s.  Time for last 1,000,000:    1s.  Last read position: chr11:62,522,921
INFO	2026-06-03 20:00:22	SinglePassSamProgram	Processed   287,000,000 records.  Elapsed time: 00:07:43s.  Time for last 1,000,000:    1s.  Last read position: chr11:62,529,958
INFO	2026-06-03 20:00:24	SinglePassSamProgram	Processed   288,000,000 records.  Elapsed time: 00:07:44s.  Time for last 1,000,000:    1s.  Last read position: chr11:62,648,242
INFO	2026-06-03 20:00:26	SinglePassSamProgram	Processed   289,000,000 records.  Elapsed time: 00:07:46s.  Time for last 1,000,000:    1s.  Last read position: chr11:64,226,981
INFO	2026-06-03 20:00:27	SinglePassSamProgram	Processed   290,000,000 records.  Elapsed time: 00:07:48s.  Time for last 1,000,000:    1s.  Last read position: chr11:65,014,211
INFO	2026-06-03 20:00:29	SinglePassSamProgram	Processed   291,000,000 records.  Elapsed time: 00:07:50s.  Time for last 1,000,000:    1s.  Last read position: chr11:65,582,465
INFO	2026-06-03 20:00:31	SinglePassSamProgram	Processed   292,000,000 records.  Elapsed time: 00:07:51s.  Time for last 1,000,000:    1s.  Last read position: chr11:65,890,852
INFO	2026-06-03 20:00:33	SinglePassSamProgram	Processed   293,000,000 records.  Elapsed time: 00:07:53s.  Time for last 1,000,000:    1s.  Last read position: chr11:66,707,677
INFO	2026-06-03 20:00:34	SinglePassSamProgram	Processed   294,000,000 records.  Elapsed time: 00:07:55s.  Time for last 1,000,000:    1s.  Last read position: chr11:67,501,974
INFO	2026-06-03 20:00:36	SinglePassSamProgram	Processed   295,000,000 records.  Elapsed time: 00:07:57s.  Time for last 1,000,000:    1s.  Last read position: chr11:70,272,398
INFO	2026-06-03 20:00:38	SinglePassSamProgram	Processed   296,000,000 records.  Elapsed time: 00:07:58s.  Time for last 1,000,000:    1s.  Last read position: chr11:72,238,164
INFO	2026-06-03 20:00:39	SinglePassSamProgram	Processed   297,000,000 records.  Elapsed time: 00:08:00s.  Time for last 1,000,000:    1s.  Last read position: chr11:75,204,441
INFO	2026-06-03 20:00:41	SinglePassSamProgram	Processed   298,000,000 records.  Elapsed time: 00:08:01s.  Time for last 1,000,000:    1s.  Last read position: chr11:83,166,450
INFO	2026-06-03 20:00:42	SinglePassSamProgram	Processed   299,000,000 records.  Elapsed time: 00:08:03s.  Time for last 1,000,000:    1s.  Last read position: chr11:96,092,588
INFO	2026-06-03 20:00:44	SinglePassSamProgram	Processed   300,000,000 records.  Elapsed time: 00:08:04s.  Time for last 1,000,000:    1s.  Last read position: chr11:108,365,405
INFO	2026-06-03 20:00:45	SinglePassSamProgram	Processed   301,000,000 records.  Elapsed time: 00:08:05s.  Time for last 1,000,000:    1s.  Last read position: chr11:118,214,857
INFO	2026-06-03 20:00:46	SinglePassSamProgram	Processed   302,000,000 records.  Elapsed time: 00:08:07s.  Time for last 1,000,000:    1s.  Last read position: chr11:118,901,018
INFO	2026-06-03 20:00:48	SinglePassSamProgram	Processed   303,000,000 records.  Elapsed time: 00:08:08s.  Time for last 1,000,000:    1s.  Last read position: chr11:123,059,659
INFO	2026-06-03 20:00:49	SinglePassSamProgram	Processed   304,000,000 records.  Elapsed time: 00:08:10s.  Time for last 1,000,000:    1s.  Last read position: chr11:130,135,605
INFO	2026-06-03 20:00:51	SinglePassSamProgram	Processed   305,000,000 records.  Elapsed time: 00:08:11s.  Time for last 1,000,000:    1s.  Last read position: chr12:1,593,917
INFO	2026-06-03 20:00:52	SinglePassSamProgram	Processed   306,000,000 records.  Elapsed time: 00:08:13s.  Time for last 1,000,000:    1s.  Last read position: chr12:6,537,605
INFO	2026-06-03 20:00:54	SinglePassSamProgram	Processed   307,000,000 records.  Elapsed time: 00:08:14s.  Time for last 1,000,000:    1s.  Last read position: chr12:7,061,777
INFO	2026-06-03 20:00:56	SinglePassSamProgram	Processed   308,000,000 records.  Elapsed time: 00:08:16s.  Time for last 1,000,000:    1s.  Last read position: chr12:9,009,036
INFO	2026-06-03 20:00:58	SinglePassSamProgram	Processed   309,000,000 records.  Elapsed time: 00:08:18s.  Time for last 1,000,000:    1s.  Last read position: chr12:10,867,931
INFO	2026-06-03 20:00:59	SinglePassSamProgram	Processed   310,000,000 records.  Elapsed time: 00:08:19s.  Time for last 1,000,000:    1s.  Last read position: chr12:16,363,802
INFO	2026-06-03 20:01:01	SinglePassSamProgram	Processed   311,000,000 records.  Elapsed time: 00:08:22s.  Time for last 1,000,000:    2s.  Last read position: chr12:31,298,123
INFO	2026-06-03 20:01:03	SinglePassSamProgram	Processed   312,000,000 records.  Elapsed time: 00:08:23s.  Time for last 1,000,000:    1s.  Last read position: chr12:45,926,301
INFO	2026-06-03 20:01:05	SinglePassSamProgram	Processed   313,000,000 records.  Elapsed time: 00:08:25s.  Time for last 1,000,000:    1s.  Last read position: chr12:49,032,516
INFO	2026-06-03 20:01:06	SinglePassSamProgram	Processed   314,000,000 records.  Elapsed time: 00:08:27s.  Time for last 1,000,000:    1s.  Last read position: chr12:49,637,429
INFO	2026-06-03 20:01:08	SinglePassSamProgram	Processed   315,000,000 records.  Elapsed time: 00:08:29s.  Time for last 1,000,000:    1s.  Last read position: chr12:51,807,258
INFO	2026-06-03 20:01:10	SinglePassSamProgram	Processed   316,000,000 records.  Elapsed time: 00:08:30s.  Time for last 1,000,000:    1s.  Last read position: chr12:53,309,621
INFO	2026-06-03 20:01:11	SinglePassSamProgram	Processed   317,000,000 records.  Elapsed time: 00:08:32s.  Time for last 1,000,000:    1s.  Last read position: chr12:54,345,500
INFO	2026-06-03 20:01:13	SinglePassSamProgram	Processed   318,000,000 records.  Elapsed time: 00:08:34s.  Time for last 1,000,000:    1s.  Last read position: chr12:56,131,508
INFO	2026-06-03 20:01:15	SinglePassSamProgram	Processed   319,000,000 records.  Elapsed time: 00:08:35s.  Time for last 1,000,000:    1s.  Last read position: chr12:56,604,566
INFO	2026-06-03 20:01:17	SinglePassSamProgram	Processed   320,000,000 records.  Elapsed time: 00:08:37s.  Time for last 1,000,000:    1s.  Last read position: chr12:57,099,995
INFO	2026-06-03 20:01:18	SinglePassSamProgram	Processed   321,000,000 records.  Elapsed time: 00:08:39s.  Time for last 1,000,000:    1s.  Last read position: chr12:57,206,546
INFO	2026-06-03 20:01:20	SinglePassSamProgram	Processed   322,000,000 records.  Elapsed time: 00:08:41s.  Time for last 1,000,000:    1s.  Last read position: chr12:57,829,507
INFO	2026-06-03 20:01:22	SinglePassSamProgram	Processed   323,000,000 records.  Elapsed time: 00:08:42s.  Time for last 1,000,000:    1s.  Last read position: chr12:69,239,688
INFO	2026-06-03 20:01:24	SinglePassSamProgram	Processed   324,000,000 records.  Elapsed time: 00:08:44s.  Time for last 1,000,000:    1s.  Last read position: chr12:88,090,805
INFO	2026-06-03 20:01:25	SinglePassSamProgram	Processed   325,000,000 records.  Elapsed time: 00:08:46s.  Time for last 1,000,000:    1s.  Last read position: chr12:96,247,121
INFO	2026-06-03 20:01:27	SinglePassSamProgram	Processed   326,000,000 records.  Elapsed time: 00:08:48s.  Time for last 1,000,000:    2s.  Last read position: chr12:104,321,297
INFO	2026-06-03 20:01:29	SinglePassSamProgram	Processed   327,000,000 records.  Elapsed time: 00:08:50s.  Time for last 1,000,000:    1s.  Last read position: chr12:109,938,445
INFO	2026-06-03 20:01:31	SinglePassSamProgram	Processed   328,000,000 records.  Elapsed time: 00:08:52s.  Time for last 1,000,000:    1s.  Last read position: chr12:112,243,994
INFO	2026-06-03 20:01:33	SinglePassSamProgram	Processed   329,000,000 records.  Elapsed time: 00:08:54s.  Time for last 1,000,000:    1s.  Last read position: chr12:113,358,710
INFO	2026-06-03 20:01:35	SinglePassSamProgram	Processed   330,000,000 records.  Elapsed time: 00:08:55s.  Time for last 1,000,000:    1s.  Last read position: chr12:120,209,861
INFO	2026-06-03 20:01:37	SinglePassSamProgram	Processed   331,000,000 records.  Elapsed time: 00:08:57s.  Time for last 1,000,000:    1s.  Last read position: chr12:122,133,395
INFO	2026-06-03 20:01:38	SinglePassSamProgram	Processed   332,000,000 records.  Elapsed time: 00:08:59s.  Time for last 1,000,000:    1s.  Last read position: chr12:124,326,283
INFO	2026-06-03 20:01:40	SinglePassSamProgram	Processed   333,000,000 records.  Elapsed time: 00:09:00s.  Time for last 1,000,000:    1s.  Last read position: chr12:131,941,863
INFO	2026-06-03 20:01:42	SinglePassSamProgram	Processed   334,000,000 records.  Elapsed time: 00:09:02s.  Time for last 1,000,000:    1s.  Last read position: chr12:133,120,678
INFO	2026-06-03 20:01:44	SinglePassSamProgram	Processed   335,000,000 records.  Elapsed time: 00:09:04s.  Time for last 1,000,000:    2s.  Last read position: chr13:25,171,081
INFO	2026-06-03 20:01:46	SinglePassSamProgram	Processed   336,000,000 records.  Elapsed time: 00:09:06s.  Time for last 1,000,000:    1s.  Last read position: chr13:37,569,791
INFO	2026-06-03 20:01:47	SinglePassSamProgram	Processed   337,000,000 records.  Elapsed time: 00:09:07s.  Time for last 1,000,000:    1s.  Last read position: chr13:44,574,886
INFO	2026-06-03 20:01:49	SinglePassSamProgram	Processed   338,000,000 records.  Elapsed time: 00:09:09s.  Time for last 1,000,000:    1s.  Last read position: chr13:51,382,043
INFO	2026-06-03 20:01:50	SinglePassSamProgram	Processed   339,000,000 records.  Elapsed time: 00:09:11s.  Time for last 1,000,000:    1s.  Last read position: chr13:81,690,599
INFO	2026-06-03 20:01:52	SinglePassSamProgram	Processed   340,000,000 records.  Elapsed time: 00:09:13s.  Time for last 1,000,000:    1s.  Last read position: chr13:110,175,223
INFO	2026-06-03 20:01:54	SinglePassSamProgram	Processed   341,000,000 records.  Elapsed time: 00:09:14s.  Time for last 1,000,000:    1s.  Last read position: chr13:113,631,676
INFO	2026-06-03 20:01:56	SinglePassSamProgram	Processed   342,000,000 records.  Elapsed time: 00:09:16s.  Time for last 1,000,000:    1s.  Last read position: chr14:21,401,054
INFO	2026-06-03 20:01:57	SinglePassSamProgram	Processed   343,000,000 records.  Elapsed time: 00:09:18s.  Time for last 1,000,000:    1s.  Last read position: chr14:23,522,814
INFO	2026-06-03 20:01:59	SinglePassSamProgram	Processed   344,000,000 records.  Elapsed time: 00:09:20s.  Time for last 1,000,000:    1s.  Last read position: chr14:24,300,500
INFO	2026-06-03 20:02:01	SinglePassSamProgram	Processed   345,000,000 records.  Elapsed time: 00:09:22s.  Time for last 1,000,000:    1s.  Last read position: chr14:35,308,060
INFO	2026-06-03 20:02:03	SinglePassSamProgram	Processed   346,000,000 records.  Elapsed time: 00:09:23s.  Time for last 1,000,000:    1s.  Last read position: chr14:49,586,743
INFO	2026-06-03 20:02:04	SinglePassSamProgram	Processed   347,000,000 records.  Elapsed time: 00:09:25s.  Time for last 1,000,000:    1s.  Last read position: chr14:52,878,646
INFO	2026-06-03 20:02:06	SinglePassSamProgram	Processed   348,000,000 records.  Elapsed time: 00:09:26s.  Time for last 1,000,000:    1s.  Last read position: chr14:61,052,040
INFO	2026-06-03 20:02:07	SinglePassSamProgram	Processed   349,000,000 records.  Elapsed time: 00:09:28s.  Time for last 1,000,000:    1s.  Last read position: chr14:64,523,319
INFO	2026-06-03 20:02:09	SinglePassSamProgram	Processed   350,000,000 records.  Elapsed time: 00:09:29s.  Time for last 1,000,000:    1s.  Last read position: chr14:69,386,947
INFO	2026-06-03 20:02:10	SinglePassSamProgram	Processed   351,000,000 records.  Elapsed time: 00:09:31s.  Time for last 1,000,000:    1s.  Last read position: chr14:73,729,915
INFO	2026-06-03 20:02:12	SinglePassSamProgram	Processed   352,000,000 records.  Elapsed time: 00:09:32s.  Time for last 1,000,000:    1s.  Last read position: chr14:75,963,422
INFO	2026-06-03 20:02:14	SinglePassSamProgram	Processed   353,000,000 records.  Elapsed time: 00:09:34s.  Time for last 1,000,000:    1s.  Last read position: chr14:90,401,363
INFO	2026-06-03 20:02:15	SinglePassSamProgram	Processed   354,000,000 records.  Elapsed time: 00:09:36s.  Time for last 1,000,000:    1s.  Last read position: chr14:94,111,672
INFO	2026-06-03 20:02:17	SinglePassSamProgram	Processed   355,000,000 records.  Elapsed time: 00:09:38s.  Time for last 1,000,000:    1s.  Last read position: chr14:100,141,780
INFO	2026-06-03 20:02:19	SinglePassSamProgram	Processed   356,000,000 records.  Elapsed time: 00:09:40s.  Time for last 1,000,000:    2s.  Last read position: chr14:102,085,421
INFO	2026-06-03 20:02:21	SinglePassSamProgram	Processed   357,000,000 records.  Elapsed time: 00:09:41s.  Time for last 1,000,000:    1s.  Last read position: chr14:104,772,981
INFO	2026-06-03 20:02:22	SinglePassSamProgram	Processed   358,000,000 records.  Elapsed time: 00:09:43s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,624,641
INFO	2026-06-03 20:02:24	SinglePassSamProgram	Processed   359,000,000 records.  Elapsed time: 00:09:44s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,708,532
INFO	2026-06-03 20:02:26	SinglePassSamProgram	Processed   360,000,000 records.  Elapsed time: 00:09:46s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,742,780
INFO	2026-06-03 20:02:27	SinglePassSamProgram	Processed   361,000,000 records.  Elapsed time: 00:09:48s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,855,137
INFO	2026-06-03 20:02:29	SinglePassSamProgram	Processed   362,000,000 records.  Elapsed time: 00:09:50s.  Time for last 1,000,000:    1s.  Last read position: chr15:28,667,225
INFO	2026-06-03 20:02:31	SinglePassSamProgram	Processed   363,000,000 records.  Elapsed time: 00:09:51s.  Time for last 1,000,000:    1s.  Last read position: chr15:34,386,788
INFO	2026-06-03 20:02:32	SinglePassSamProgram	Processed   364,000,000 records.  Elapsed time: 00:09:53s.  Time for last 1,000,000:    1s.  Last read position: chr15:40,813,965
INFO	2026-06-03 20:02:34	SinglePassSamProgram	Processed   365,000,000 records.  Elapsed time: 00:09:55s.  Time for last 1,000,000:    1s.  Last read position: chr15:42,735,543
INFO	2026-06-03 20:02:36	SinglePassSamProgram	Processed   366,000,000 records.  Elapsed time: 00:09:56s.  Time for last 1,000,000:    1s.  Last read position: chr15:44,629,240
INFO	2026-06-03 20:02:37	SinglePassSamProgram	Processed   367,000,000 records.  Elapsed time: 00:09:58s.  Time for last 1,000,000:    1s.  Last read position: chr15:50,631,440
INFO	2026-06-03 20:02:40	SinglePassSamProgram	Processed   368,000,000 records.  Elapsed time: 00:10:00s.  Time for last 1,000,000:    2s.  Last read position: chr15:58,627,700
INFO	2026-06-03 20:02:41	SinglePassSamProgram	Processed   369,000,000 records.  Elapsed time: 00:10:02s.  Time for last 1,000,000:    1s.  Last read position: chr15:61,974,379
INFO	2026-06-03 20:02:43	SinglePassSamProgram	Processed   370,000,000 records.  Elapsed time: 00:10:03s.  Time for last 1,000,000:    1s.  Last read position: chr15:64,072,983
INFO	2026-06-03 20:02:45	SinglePassSamProgram	Processed   371,000,000 records.  Elapsed time: 00:10:05s.  Time for last 1,000,000:    1s.  Last read position: chr15:65,595,749
INFO	2026-06-03 20:02:46	SinglePassSamProgram	Processed   372,000,000 records.  Elapsed time: 00:10:07s.  Time for last 1,000,000:    1s.  Last read position: chr15:70,851,572
INFO	2026-06-03 20:02:48	SinglePassSamProgram	Processed   373,000,000 records.  Elapsed time: 00:10:09s.  Time for last 1,000,000:    1s.  Last read position: chr15:73,994,931
INFO	2026-06-03 20:02:50	SinglePassSamProgram	Processed   374,000,000 records.  Elapsed time: 00:10:10s.  Time for last 1,000,000:    1s.  Last read position: chr15:74,937,925
INFO	2026-06-03 20:02:52	SinglePassSamProgram	Processed   375,000,000 records.  Elapsed time: 00:10:12s.  Time for last 1,000,000:    1s.  Last read position: chr15:77,025,547
INFO	2026-06-03 20:02:53	SinglePassSamProgram	Processed   376,000,000 records.  Elapsed time: 00:10:14s.  Time for last 1,000,000:    1s.  Last read position: chr15:81,299,781
INFO	2026-06-03 20:02:55	SinglePassSamProgram	Processed   377,000,000 records.  Elapsed time: 00:10:16s.  Time for last 1,000,000:    1s.  Last read position: chr15:85,579,608
INFO	2026-06-03 20:02:57	SinglePassSamProgram	Processed   378,000,000 records.  Elapsed time: 00:10:17s.  Time for last 1,000,000:    1s.  Last read position: chr15:90,390,846
INFO	2026-06-03 20:02:59	SinglePassSamProgram	Processed   379,000,000 records.  Elapsed time: 00:10:19s.  Time for last 1,000,000:    1s.  Last read position: chr15:97,960,876
INFO	2026-06-03 20:03:01	SinglePassSamProgram	Processed   380,000,000 records.  Elapsed time: 00:10:21s.  Time for last 1,000,000:    1s.  Last read position: chr16:86,707
INFO	2026-06-03 20:03:02	SinglePassSamProgram	Processed   381,000,000 records.  Elapsed time: 00:10:23s.  Time for last 1,000,000:    1s.  Last read position: chr16:1,438,058
INFO	2026-06-03 20:03:04	SinglePassSamProgram	Processed   382,000,000 records.  Elapsed time: 00:10:25s.  Time for last 1,000,000:    1s.  Last read position: chr16:2,102,469
INFO	2026-06-03 20:03:06	SinglePassSamProgram	Processed   383,000,000 records.  Elapsed time: 00:10:27s.  Time for last 1,000,000:    2s.  Last read position: chr16:2,763,711
INFO	2026-06-03 20:03:08	SinglePassSamProgram	Processed   384,000,000 records.  Elapsed time: 00:10:29s.  Time for last 1,000,000:    1s.  Last read position: chr16:3,563,269
INFO	2026-06-03 20:03:10	SinglePassSamProgram	Processed   385,000,000 records.  Elapsed time: 00:10:31s.  Time for last 1,000,000:    2s.  Last read position: chr16:5,091,533
INFO	2026-06-03 20:03:12	SinglePassSamProgram	Processed   386,000,000 records.  Elapsed time: 00:10:32s.  Time for last 1,000,000:    1s.  Last read position: chr16:14,246,687
INFO	2026-06-03 20:03:14	SinglePassSamProgram	Processed   387,000,000 records.  Elapsed time: 00:10:34s.  Time for last 1,000,000:    1s.  Last read position: chr16:15,137,077
INFO	2026-06-03 20:03:16	SinglePassSamProgram	Processed   388,000,000 records.  Elapsed time: 00:10:36s.  Time for last 1,000,000:    1s.  Last read position: chr16:16,358,594
INFO	2026-06-03 20:03:17	SinglePassSamProgram	Processed   389,000,000 records.  Elapsed time: 00:10:38s.  Time for last 1,000,000:    1s.  Last read position: chr16:18,395,889
INFO	2026-06-03 20:03:19	SinglePassSamProgram	Processed   390,000,000 records.  Elapsed time: 00:10:39s.  Time for last 1,000,000:    1s.  Last read position: chr16:21,403,395
INFO	2026-06-03 20:03:21	SinglePassSamProgram	Processed   391,000,000 records.  Elapsed time: 00:10:41s.  Time for last 1,000,000:    1s.  Last read position: chr16:21,834,818
INFO	2026-06-03 20:03:22	SinglePassSamProgram	Processed   392,000,000 records.  Elapsed time: 00:10:43s.  Time for last 1,000,000:    1s.  Last read position: chr16:22,347,391
INFO	2026-06-03 20:03:24	SinglePassSamProgram	Processed   393,000,000 records.  Elapsed time: 00:10:45s.  Time for last 1,000,000:    1s.  Last read position: chr16:22,535,236
INFO	2026-06-03 20:03:26	SinglePassSamProgram	Processed   394,000,000 records.  Elapsed time: 00:10:47s.  Time for last 1,000,000:    1s.  Last read position: chr16:28,106,102
INFO	2026-06-03 20:03:28	SinglePassSamProgram	Processed   395,000,000 records.  Elapsed time: 00:10:49s.  Time for last 1,000,000:    1s.  Last read position: chr16:29,097,243
INFO	2026-06-03 20:03:30	SinglePassSamProgram	Processed   396,000,000 records.  Elapsed time: 00:10:50s.  Time for last 1,000,000:    1s.  Last read position: chr16:29,491,848
INFO	2026-06-03 20:03:32	SinglePassSamProgram	Processed   397,000,000 records.  Elapsed time: 00:10:52s.  Time for last 1,000,000:    1s.  Last read position: chr16:30,082,746
INFO	2026-06-03 20:03:34	SinglePassSamProgram	Processed   398,000,000 records.  Elapsed time: 00:10:54s.  Time for last 1,000,000:    1s.  Last read position: chr16:30,353,373
INFO	2026-06-03 20:03:36	SinglePassSamProgram	Processed   399,000,000 records.  Elapsed time: 00:10:56s.  Time for last 1,000,000:    1s.  Last read position: chr16:30,784,351
INFO	2026-06-03 20:03:38	SinglePassSamProgram	Processed   400,000,000 records.  Elapsed time: 00:10:58s.  Time for last 1,000,000:    1s.  Last read position: chr16:31,362,162
INFO	2026-06-03 20:03:40	SinglePassSamProgram	Processed   401,000,000 records.  Elapsed time: 00:11:00s.  Time for last 1,000,000:    1s.  Last read position: chr16:51,646,716
INFO	2026-06-03 20:03:42	SinglePassSamProgram	Processed   402,000,000 records.  Elapsed time: 00:11:02s.  Time for last 1,000,000:    2s.  Last read position: chr16:56,940,173
INFO	2026-06-03 20:03:44	SinglePassSamProgram	Processed   403,000,000 records.  Elapsed time: 00:11:04s.  Time for last 1,000,000:    2s.  Last read position: chr16:64,973,001
INFO	2026-06-03 20:03:46	SinglePassSamProgram	Processed   404,000,000 records.  Elapsed time: 00:11:06s.  Time for last 1,000,000:    2s.  Last read position: chr16:67,908,709
INFO	2026-06-03 20:03:48	SinglePassSamProgram	Processed   405,000,000 records.  Elapsed time: 00:11:08s.  Time for last 1,000,000:    1s.  Last read position: chr16:69,748,936
INFO	2026-06-03 20:03:50	SinglePassSamProgram	Processed   406,000,000 records.  Elapsed time: 00:11:10s.  Time for last 1,000,000:    1s.  Last read position: chr16:72,787,698
INFO	2026-06-03 20:03:52	SinglePassSamProgram	Processed   407,000,000 records.  Elapsed time: 00:11:12s.  Time for last 1,000,000:    1s.  Last read position: chr16:83,808,006
INFO	2026-06-03 20:03:53	SinglePassSamProgram	Processed   408,000,000 records.  Elapsed time: 00:11:14s.  Time for last 1,000,000:    1s.  Last read position: chr16:87,981,082
INFO	2026-06-03 20:03:55	SinglePassSamProgram	Processed   409,000,000 records.  Elapsed time: 00:11:16s.  Time for last 1,000,000:    1s.  Last read position: chr16:89,100,727
INFO	2026-06-03 20:03:57	SinglePassSamProgram	Processed   410,000,000 records.  Elapsed time: 00:11:17s.  Time for last 1,000,000:    1s.  Last read position: chr17:674,813
INFO	2026-06-03 20:03:58	SinglePassSamProgram	Processed   411,000,000 records.  Elapsed time: 00:11:19s.  Time for last 1,000,000:    1s.  Last read position: chr17:1,775,094
INFO	2026-06-03 20:04:00	SinglePassSamProgram	Processed   412,000,000 records.  Elapsed time: 00:11:21s.  Time for last 1,000,000:    1s.  Last read position: chr17:4,184,841
INFO	2026-06-03 20:04:02	SinglePassSamProgram	Processed   413,000,000 records.  Elapsed time: 00:11:22s.  Time for last 1,000,000:    1s.  Last read position: chr17:5,558,900
INFO	2026-06-03 20:04:03	SinglePassSamProgram	Processed   414,000,000 records.  Elapsed time: 00:11:24s.  Time for last 1,000,000:    1s.  Last read position: chr17:7,497,779
INFO	2026-06-03 20:04:05	SinglePassSamProgram	Processed   415,000,000 records.  Elapsed time: 00:11:25s.  Time for last 1,000,000:    1s.  Last read position: chr17:7,945,714
INFO	2026-06-03 20:04:07	SinglePassSamProgram	Processed   416,000,000 records.  Elapsed time: 00:11:27s.  Time for last 1,000,000:    1s.  Last read position: chr17:16,171,829
INFO	2026-06-03 20:04:08	SinglePassSamProgram	Processed   417,000,000 records.  Elapsed time: 00:11:29s.  Time for last 1,000,000:    1s.  Last read position: chr17:18,254,609
INFO	2026-06-03 20:04:10	SinglePassSamProgram	Processed   418,000,000 records.  Elapsed time: 00:11:31s.  Time for last 1,000,000:    2s.  Last read position: chr17:28,396,188
INFO	2026-06-03 20:04:12	SinglePassSamProgram	Processed   419,000,000 records.  Elapsed time: 00:11:33s.  Time for last 1,000,000:    1s.  Last read position: chr17:29,534,122
INFO	2026-06-03 20:04:14	SinglePassSamProgram	Processed   420,000,000 records.  Elapsed time: 00:11:34s.  Time for last 1,000,000:    1s.  Last read position: chr17:32,369,651
INFO	2026-06-03 20:04:16	SinglePassSamProgram	Processed   421,000,000 records.  Elapsed time: 00:11:36s.  Time for last 1,000,000:    1s.  Last read position: chr17:35,878,600
INFO	2026-06-03 20:04:17	SinglePassSamProgram	Processed   422,000,000 records.  Elapsed time: 00:11:38s.  Time for last 1,000,000:    1s.  Last read position: chr17:38,008,696
INFO	2026-06-03 20:04:19	SinglePassSamProgram	Processed   423,000,000 records.  Elapsed time: 00:11:39s.  Time for last 1,000,000:    1s.  Last read position: chr17:38,719,771
INFO	2026-06-03 20:04:21	SinglePassSamProgram	Processed   424,000,000 records.  Elapsed time: 00:11:41s.  Time for last 1,000,000:    1s.  Last read position: chr17:38,878,175
INFO	2026-06-03 20:04:23	SinglePassSamProgram	Processed   425,000,000 records.  Elapsed time: 00:11:43s.  Time for last 1,000,000:    2s.  Last read position: chr17:39,517,484
INFO	2026-06-03 20:04:25	SinglePassSamProgram	Processed   426,000,000 records.  Elapsed time: 00:11:45s.  Time for last 1,000,000:    1s.  Last read position: chr17:39,709,756
INFO	2026-06-03 20:04:27	SinglePassSamProgram	Processed   427,000,000 records.  Elapsed time: 00:11:47s.  Time for last 1,000,000:    1s.  Last read position: chr17:39,715,780
INFO	2026-06-03 20:04:28	SinglePassSamProgram	Processed   428,000,000 records.  Elapsed time: 00:11:49s.  Time for last 1,000,000:    1s.  Last read position: chr17:39,723,618
INFO	2026-06-03 20:04:30	SinglePassSamProgram	Processed   429,000,000 records.  Elapsed time: 00:11:51s.  Time for last 1,000,000:    1s.  Last read position: chr17:39,727,359
INFO	2026-06-03 20:04:32	SinglePassSamProgram	Processed   430,000,000 records.  Elapsed time: 00:11:52s.  Time for last 1,000,000:    1s.  Last read position: chr17:40,088,440
INFO	2026-06-03 20:04:34	SinglePassSamProgram	Processed   431,000,000 records.  Elapsed time: 00:11:54s.  Time for last 1,000,000:    1s.  Last read position: chr17:41,523,960
INFO	2026-06-03 20:04:36	SinglePassSamProgram	Processed   432,000,000 records.  Elapsed time: 00:11:56s.  Time for last 1,000,000:    1s.  Last read position: chr17:42,329,616
INFO	2026-06-03 20:04:37	SinglePassSamProgram	Processed   433,000,000 records.  Elapsed time: 00:11:58s.  Time for last 1,000,000:    1s.  Last read position: chr17:44,091,725
INFO	2026-06-03 20:04:39	SinglePassSamProgram	Processed   434,000,000 records.  Elapsed time: 00:11:59s.  Time for last 1,000,000:    1s.  Last read position: chr17:45,513,965
INFO	2026-06-03 20:04:40	SinglePassSamProgram	Processed   435,000,000 records.  Elapsed time: 00:12:01s.  Time for last 1,000,000:    1s.  Last read position: chr17:47,612,510
INFO	2026-06-03 20:04:42	SinglePassSamProgram	Processed   436,000,000 records.  Elapsed time: 00:12:03s.  Time for last 1,000,000:    1s.  Last read position: chr17:49,707,756
INFO	2026-06-03 20:04:44	SinglePassSamProgram	Processed   437,000,000 records.  Elapsed time: 00:12:04s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,187,014
INFO	2026-06-03 20:04:46	SinglePassSamProgram	Processed   438,000,000 records.  Elapsed time: 00:12:06s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,188,987
INFO	2026-06-03 20:04:47	SinglePassSamProgram	Processed   439,000,000 records.  Elapsed time: 00:12:08s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,190,827
INFO	2026-06-03 20:04:49	SinglePassSamProgram	Processed   440,000,000 records.  Elapsed time: 00:12:09s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,193,961
INFO	2026-06-03 20:04:51	SinglePassSamProgram	Processed   441,000,000 records.  Elapsed time: 00:12:11s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,195,457
INFO	2026-06-03 20:04:53	SinglePassSamProgram	Processed   442,000,000 records.  Elapsed time: 00:12:13s.  Time for last 1,000,000:    2s.  Last read position: chr17:50,197,049
INFO	2026-06-03 20:04:54	SinglePassSamProgram	Processed   443,000,000 records.  Elapsed time: 00:12:14s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,199,918
INFO	2026-06-03 20:04:56	SinglePassSamProgram	Processed   444,000,000 records.  Elapsed time: 00:12:16s.  Time for last 1,000,000:    1s.  Last read position: chr17:57,974,504
INFO	2026-06-03 20:04:58	SinglePassSamProgram	Processed   445,000,000 records.  Elapsed time: 00:12:18s.  Time for last 1,000,000:    1s.  Last read position: chr17:59,647,522
INFO	2026-06-03 20:05:00	SinglePassSamProgram	Processed   446,000,000 records.  Elapsed time: 00:12:20s.  Time for last 1,000,000:    1s.  Last read position: chr17:59,668,803
INFO	2026-06-03 20:05:02	SinglePassSamProgram	Processed   447,000,000 records.  Elapsed time: 00:12:22s.  Time for last 1,000,000:    1s.  Last read position: chr17:59,683,107
INFO	2026-06-03 20:05:03	SinglePassSamProgram	Processed   448,000,000 records.  Elapsed time: 00:12:24s.  Time for last 1,000,000:    1s.  Last read position: chr17:60,049,654
INFO	2026-06-03 20:05:05	SinglePassSamProgram	Processed   449,000,000 records.  Elapsed time: 00:12:26s.  Time for last 1,000,000:    1s.  Last read position: chr17:62,552,307
INFO	2026-06-03 20:05:07	SinglePassSamProgram	Processed   450,000,000 records.  Elapsed time: 00:12:28s.  Time for last 1,000,000:    2s.  Last read position: chr17:64,153,113
INFO	2026-06-03 20:05:09	SinglePassSamProgram	Processed   451,000,000 records.  Elapsed time: 00:12:30s.  Time for last 1,000,000:    1s.  Last read position: chr17:64,821,808
INFO	2026-06-03 20:05:11	SinglePassSamProgram	Processed   452,000,000 records.  Elapsed time: 00:12:32s.  Time for last 1,000,000:    1s.  Last read position: chr17:68,037,363
INFO	2026-06-03 20:05:13	SinglePassSamProgram	Processed   453,000,000 records.  Elapsed time: 00:12:34s.  Time for last 1,000,000:    2s.  Last read position: chr17:73,201,641
INFO	2026-06-03 20:05:15	SinglePassSamProgram	Processed   454,000,000 records.  Elapsed time: 00:12:36s.  Time for last 1,000,000:    1s.  Last read position: chr17:75,589,862
INFO	2026-06-03 20:05:17	SinglePassSamProgram	Processed   455,000,000 records.  Elapsed time: 00:12:37s.  Time for last 1,000,000:    1s.  Last read position: chr17:76,570,602
INFO	2026-06-03 20:05:19	SinglePassSamProgram	Processed   456,000,000 records.  Elapsed time: 00:12:39s.  Time for last 1,000,000:    1s.  Last read position: chr17:78,798,998
INFO	2026-06-03 20:05:21	SinglePassSamProgram	Processed   457,000,000 records.  Elapsed time: 00:12:41s.  Time for last 1,000,000:    1s.  Last read position: chr17:80,039,911
INFO	2026-06-03 20:05:23	SinglePassSamProgram	Processed   458,000,000 records.  Elapsed time: 00:12:43s.  Time for last 1,000,000:    1s.  Last read position: chr17:80,295,716
INFO	2026-06-03 20:05:24	SinglePassSamProgram	Processed   459,000,000 records.  Elapsed time: 00:12:45s.  Time for last 1,000,000:    1s.  Last read position: chr17:80,345,990
INFO	2026-06-03 20:05:26	SinglePassSamProgram	Processed   460,000,000 records.  Elapsed time: 00:12:47s.  Time for last 1,000,000:    1s.  Last read position: chr17:80,376,912
INFO	2026-06-03 20:05:28	SinglePassSamProgram	Processed   461,000,000 records.  Elapsed time: 00:12:49s.  Time for last 1,000,000:    1s.  Last read position: chr17:81,700,497
INFO	2026-06-03 20:05:30	SinglePassSamProgram	Processed   462,000,000 records.  Elapsed time: 00:12:51s.  Time for last 1,000,000:    2s.  Last read position: chr17:82,084,370
INFO	2026-06-03 20:05:32	SinglePassSamProgram	Processed   463,000,000 records.  Elapsed time: 00:12:53s.  Time for last 1,000,000:    2s.  Last read position: chr17:82,586,060
INFO	2026-06-03 20:05:34	SinglePassSamProgram	Processed   464,000,000 records.  Elapsed time: 00:12:55s.  Time for last 1,000,000:    2s.  Last read position: chr18:8,706,350
INFO	2026-06-03 20:05:36	SinglePassSamProgram	Processed   465,000,000 records.  Elapsed time: 00:12:57s.  Time for last 1,000,000:    1s.  Last read position: chr18:23,518,893
INFO	2026-06-03 20:05:38	SinglePassSamProgram	Processed   466,000,000 records.  Elapsed time: 00:12:59s.  Time for last 1,000,000:    2s.  Last read position: chr18:36,171,065
INFO	2026-06-03 20:05:40	SinglePassSamProgram	Processed   467,000,000 records.  Elapsed time: 00:13:01s.  Time for last 1,000,000:    2s.  Last read position: chr18:55,275,709
INFO	2026-06-03 20:05:42	SinglePassSamProgram	Processed   468,000,000 records.  Elapsed time: 00:13:02s.  Time for last 1,000,000:    1s.  Last read position: chr18:74,263,377
INFO	2026-06-03 20:05:44	SinglePassSamProgram	Processed   469,000,000 records.  Elapsed time: 00:13:04s.  Time for last 1,000,000:    1s.  Last read position: chr19:902,016
INFO	2026-06-03 20:05:45	SinglePassSamProgram	Processed   470,000,000 records.  Elapsed time: 00:13:06s.  Time for last 1,000,000:    1s.  Last read position: chr19:1,272,440
INFO	2026-06-03 20:05:47	SinglePassSamProgram	Processed   471,000,000 records.  Elapsed time: 00:13:08s.  Time for last 1,000,000:    1s.  Last read position: chr19:2,243,530
INFO	2026-06-03 20:05:49	SinglePassSamProgram	Processed   472,000,000 records.  Elapsed time: 00:13:10s.  Time for last 1,000,000:    2s.  Last read position: chr19:4,054,722
INFO	2026-06-03 20:05:51	SinglePassSamProgram	Processed   473,000,000 records.  Elapsed time: 00:13:12s.  Time for last 1,000,000:    2s.  Last read position: chr19:5,789,390
INFO	2026-06-03 20:05:53	SinglePassSamProgram	Processed   474,000,000 records.  Elapsed time: 00:13:13s.  Time for last 1,000,000:    1s.  Last read position: chr19:6,713,487
INFO	2026-06-03 20:05:54	SinglePassSamProgram	Processed   475,000,000 records.  Elapsed time: 00:13:15s.  Time for last 1,000,000:    1s.  Last read position: chr19:8,455,535
INFO	2026-06-03 20:05:56	SinglePassSamProgram	Processed   476,000,000 records.  Elapsed time: 00:13:17s.  Time for last 1,000,000:    1s.  Last read position: chr19:10,119,112
INFO	2026-06-03 20:05:58	SinglePassSamProgram	Processed   477,000,000 records.  Elapsed time: 00:13:19s.  Time for last 1,000,000:    1s.  Last read position: chr19:11,033,301
INFO	2026-06-03 20:06:00	SinglePassSamProgram	Processed   478,000,000 records.  Elapsed time: 00:13:20s.  Time for last 1,000,000:    1s.  Last read position: chr19:12,731,040
INFO	2026-06-03 20:06:01	SinglePassSamProgram	Processed   479,000,000 records.  Elapsed time: 00:13:22s.  Time for last 1,000,000:    1s.  Last read position: chr19:14,397,712
INFO	2026-06-03 20:06:03	SinglePassSamProgram	Processed   480,000,000 records.  Elapsed time: 00:13:24s.  Time for last 1,000,000:    1s.  Last read position: chr19:15,254,231
INFO	2026-06-03 20:06:05	SinglePassSamProgram	Processed   481,000,000 records.  Elapsed time: 00:13:25s.  Time for last 1,000,000:    1s.  Last read position: chr19:17,102,347
INFO	2026-06-03 20:06:06	SinglePassSamProgram	Processed   482,000,000 records.  Elapsed time: 00:13:27s.  Time for last 1,000,000:    1s.  Last read position: chr19:18,134,689
INFO	2026-06-03 20:06:08	SinglePassSamProgram	Processed   483,000,000 records.  Elapsed time: 00:13:29s.  Time for last 1,000,000:    1s.  Last read position: chr19:19,146,809
INFO	2026-06-03 20:06:09	SinglePassSamProgram	Processed   484,000,000 records.  Elapsed time: 00:13:30s.  Time for last 1,000,000:    1s.  Last read position: chr19:33,206,079
INFO	2026-06-03 20:06:11	SinglePassSamProgram	Processed   485,000,000 records.  Elapsed time: 00:13:32s.  Time for last 1,000,000:    2s.  Last read position: chr19:35,716,595
INFO	2026-06-03 20:06:13	SinglePassSamProgram	Processed   486,000,000 records.  Elapsed time: 00:13:34s.  Time for last 1,000,000:    1s.  Last read position: chr19:38,283,753
INFO	2026-06-03 20:06:15	SinglePassSamProgram	Processed   487,000,000 records.  Elapsed time: 00:13:36s.  Time for last 1,000,000:    1s.  Last read position: chr19:39,408,366
INFO	2026-06-03 20:06:17	SinglePassSamProgram	Processed   488,000,000 records.  Elapsed time: 00:13:37s.  Time for last 1,000,000:    1s.  Last read position: chr19:40,588,684
INFO	2026-06-03 20:06:18	SinglePassSamProgram	Processed   489,000,000 records.  Elapsed time: 00:13:39s.  Time for last 1,000,000:    1s.  Last read position: chr19:41,755,672
INFO	2026-06-03 20:06:20	SinglePassSamProgram	Processed   490,000,000 records.  Elapsed time: 00:13:40s.  Time for last 1,000,000:    1s.  Last read position: chr19:42,232,098
INFO	2026-06-03 20:06:21	SinglePassSamProgram	Processed   491,000,000 records.  Elapsed time: 00:13:42s.  Time for last 1,000,000:    1s.  Last read position: chr19:43,596,707
INFO	2026-06-03 20:06:22	SinglePassSamProgram	Processed   492,000,000 records.  Elapsed time: 00:13:43s.  Time for last 1,000,000:    1s.  Last read position: chr19:45,164,176
INFO	2026-06-03 20:06:24	SinglePassSamProgram	Processed   493,000,000 records.  Elapsed time: 00:13:44s.  Time for last 1,000,000:    1s.  Last read position: chr19:46,918,826
INFO	2026-06-03 20:06:26	SinglePassSamProgram	Processed   494,000,000 records.  Elapsed time: 00:13:46s.  Time for last 1,000,000:    2s.  Last read position: chr19:48,473,965
INFO	2026-06-03 20:06:28	SinglePassSamProgram	Processed   495,000,000 records.  Elapsed time: 00:13:48s.  Time for last 1,000,000:    2s.  Last read position: chr19:49,468,454
INFO	2026-06-03 20:06:30	SinglePassSamProgram	Processed   496,000,000 records.  Elapsed time: 00:13:50s.  Time for last 1,000,000:    2s.  Last read position: chr19:49,805,720
INFO	2026-06-03 20:06:32	SinglePassSamProgram	Processed   497,000,000 records.  Elapsed time: 00:13:52s.  Time for last 1,000,000:    1s.  Last read position: chr19:51,372,463
INFO	2026-06-03 20:06:33	SinglePassSamProgram	Processed   498,000,000 records.  Elapsed time: 00:13:54s.  Time for last 1,000,000:    1s.  Last read position: chr19:54,158,391
INFO	2026-06-03 20:06:36	SinglePassSamProgram	Processed   499,000,000 records.  Elapsed time: 00:13:56s.  Time for last 1,000,000:    2s.  Last read position: chr19:55,239,451
INFO	2026-06-03 20:06:38	SinglePassSamProgram	Processed   500,000,000 records.  Elapsed time: 00:13:58s.  Time for last 1,000,000:    2s.  Last read position: chr19:57,552,356
INFO	2026-06-03 20:06:39	SinglePassSamProgram	Processed   501,000,000 records.  Elapsed time: 00:14:00s.  Time for last 1,000,000:    1s.  Last read position: chr19:58,549,125
INFO	2026-06-03 20:06:41	SinglePassSamProgram	Processed   502,000,000 records.  Elapsed time: 00:14:02s.  Time for last 1,000,000:    2s.  Last read position: chr20:3,166,769
INFO	2026-06-03 20:06:43	SinglePassSamProgram	Processed   503,000,000 records.  Elapsed time: 00:14:04s.  Time for last 1,000,000:    2s.  Last read position: chr20:13,776,010
INFO	2026-06-03 20:06:45	SinglePassSamProgram	Processed   504,000,000 records.  Elapsed time: 00:14:06s.  Time for last 1,000,000:    2s.  Last read position: chr20:23,826,445
INFO	2026-06-03 20:06:48	SinglePassSamProgram	Processed   505,000,000 records.  Elapsed time: 00:14:08s.  Time for last 1,000,000:    2s.  Last read position: chr20:32,428,346
INFO	2026-06-03 20:06:49	SinglePassSamProgram	Processed   506,000,000 records.  Elapsed time: 00:14:10s.  Time for last 1,000,000:    1s.  Last read position: chr20:34,757,475
INFO	2026-06-03 20:06:51	SinglePassSamProgram	Processed   507,000,000 records.  Elapsed time: 00:14:11s.  Time for last 1,000,000:    1s.  Last read position: chr20:35,542,095
INFO	2026-06-03 20:06:53	SinglePassSamProgram	Processed   508,000,000 records.  Elapsed time: 00:14:13s.  Time for last 1,000,000:    2s.  Last read position: chr20:35,714,200
INFO	2026-06-03 20:06:55	SinglePassSamProgram	Processed   509,000,000 records.  Elapsed time: 00:14:15s.  Time for last 1,000,000:    1s.  Last read position: chr20:37,203,913
INFO	2026-06-03 20:06:56	SinglePassSamProgram	Processed   510,000,000 records.  Elapsed time: 00:14:17s.  Time for last 1,000,000:    1s.  Last read position: chr20:41,165,343
INFO	2026-06-03 20:06:58	SinglePassSamProgram	Processed   511,000,000 records.  Elapsed time: 00:14:19s.  Time for last 1,000,000:    1s.  Last read position: chr20:45,416,160
INFO	2026-06-03 20:07:00	SinglePassSamProgram	Processed   512,000,000 records.  Elapsed time: 00:14:20s.  Time for last 1,000,000:    1s.  Last read position: chr20:47,652,417
INFO	2026-06-03 20:07:02	SinglePassSamProgram	Processed   513,000,000 records.  Elapsed time: 00:14:22s.  Time for last 1,000,000:    1s.  Last read position: chr20:49,238,978
INFO	2026-06-03 20:07:04	SinglePassSamProgram	Processed   514,000,000 records.  Elapsed time: 00:14:24s.  Time for last 1,000,000:    1s.  Last read position: chr20:50,892,857
INFO	2026-06-03 20:07:06	SinglePassSamProgram	Processed   515,000,000 records.  Elapsed time: 00:14:26s.  Time for last 1,000,000:    1s.  Last read position: chr20:56,365,137
INFO	2026-06-03 20:07:08	SinglePassSamProgram	Processed   516,000,000 records.  Elapsed time: 00:14:28s.  Time for last 1,000,000:    1s.  Last read position: chr20:58,981,344
INFO	2026-06-03 20:07:10	SinglePassSamProgram	Processed   517,000,000 records.  Elapsed time: 00:14:30s.  Time for last 1,000,000:    1s.  Last read position: chr20:62,333,590
INFO	2026-06-03 20:07:12	SinglePassSamProgram	Processed   518,000,000 records.  Elapsed time: 00:14:32s.  Time for last 1,000,000:    1s.  Last read position: chr20:63,287,611
INFO	2026-06-03 20:07:13	SinglePassSamProgram	Processed   519,000,000 records.  Elapsed time: 00:14:33s.  Time for last 1,000,000:    1s.  Last read position: chr20:63,697,023
INFO	2026-06-03 20:07:14	SinglePassSamProgram	Processed   520,000,000 records.  Elapsed time: 00:14:35s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,207,090
INFO	2026-06-03 20:07:15	SinglePassSamProgram	Processed   521,000,000 records.  Elapsed time: 00:14:36s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,399,960
INFO	2026-06-03 20:07:17	SinglePassSamProgram	Processed   522,000,000 records.  Elapsed time: 00:14:37s.  Time for last 1,000,000:    1s.  Last read position: chr21:25,982,403
INFO	2026-06-03 20:07:18	SinglePassSamProgram	Processed   523,000,000 records.  Elapsed time: 00:14:39s.  Time for last 1,000,000:    1s.  Last read position: chr21:33,557,162
INFO	2026-06-03 20:07:20	SinglePassSamProgram	Processed   524,000,000 records.  Elapsed time: 00:14:40s.  Time for last 1,000,000:    1s.  Last read position: chr21:39,348,547
INFO	2026-06-03 20:07:22	SinglePassSamProgram	Processed   525,000,000 records.  Elapsed time: 00:14:42s.  Time for last 1,000,000:    1s.  Last read position: chr21:44,231,380
INFO	2026-06-03 20:07:23	SinglePassSamProgram	Processed   526,000,000 records.  Elapsed time: 00:14:44s.  Time for last 1,000,000:    1s.  Last read position: chr21:45,992,028
INFO	2026-06-03 20:07:25	SinglePassSamProgram	Processed   527,000,000 records.  Elapsed time: 00:14:46s.  Time for last 1,000,000:    1s.  Last read position: chr21:46,126,176
INFO	2026-06-03 20:07:27	SinglePassSamProgram	Processed   528,000,000 records.  Elapsed time: 00:14:47s.  Time for last 1,000,000:    1s.  Last read position: chr22:19,385,671
INFO	2026-06-03 20:07:29	SinglePassSamProgram	Processed   529,000,000 records.  Elapsed time: 00:14:49s.  Time for last 1,000,000:    1s.  Last read position: chr22:21,387,553
INFO	2026-06-03 20:07:30	SinglePassSamProgram	Processed   530,000,000 records.  Elapsed time: 00:14:50s.  Time for last 1,000,000:    1s.  Last read position: chr22:23,800,983
INFO	2026-06-03 20:07:31	SinglePassSamProgram	Processed   531,000,000 records.  Elapsed time: 00:14:52s.  Time for last 1,000,000:    1s.  Last read position: chr22:28,795,280
INFO	2026-06-03 20:07:33	SinglePassSamProgram	Processed   532,000,000 records.  Elapsed time: 00:14:54s.  Time for last 1,000,000:    1s.  Last read position: chr22:29,299,276
INFO	2026-06-03 20:07:34	SinglePassSamProgram	Processed   533,000,000 records.  Elapsed time: 00:14:55s.  Time for last 1,000,000:    1s.  Last read position: chr22:31,099,863
INFO	2026-06-03 20:07:36	SinglePassSamProgram	Processed   534,000,000 records.  Elapsed time: 00:14:56s.  Time for last 1,000,000:    1s.  Last read position: chr22:35,419,896
INFO	2026-06-03 20:07:37	SinglePassSamProgram	Processed   535,000,000 records.  Elapsed time: 00:14:58s.  Time for last 1,000,000:    1s.  Last read position: chr22:36,305,974
INFO	2026-06-03 20:07:39	SinglePassSamProgram	Processed   536,000,000 records.  Elapsed time: 00:14:59s.  Time for last 1,000,000:    1s.  Last read position: chr22:37,303,296
INFO	2026-06-03 20:07:40	SinglePassSamProgram	Processed   537,000,000 records.  Elapsed time: 00:15:00s.  Time for last 1,000,000:    1s.  Last read position: chr22:38,485,908
INFO	2026-06-03 20:07:41	SinglePassSamProgram	Processed   538,000,000 records.  Elapsed time: 00:15:01s.  Time for last 1,000,000:    1s.  Last read position: chr22:39,521,658
INFO	2026-06-03 20:07:42	SinglePassSamProgram	Processed   539,000,000 records.  Elapsed time: 00:15:03s.  Time for last 1,000,000:    1s.  Last read position: chr22:41,436,597
INFO	2026-06-03 20:07:43	SinglePassSamProgram	Processed   540,000,000 records.  Elapsed time: 00:15:04s.  Time for last 1,000,000:    1s.  Last read position: chr22:42,693,730
INFO	2026-06-03 20:07:45	SinglePassSamProgram	Processed   541,000,000 records.  Elapsed time: 00:15:06s.  Time for last 1,000,000:    1s.  Last read position: chr22:46,536,519
INFO	2026-06-03 20:07:47	SinglePassSamProgram	Processed   542,000,000 records.  Elapsed time: 00:15:07s.  Time for last 1,000,000:    1s.  Last read position: chr22:50,290,046
INFO	2026-06-03 20:07:48	SinglePassSamProgram	Processed   543,000,000 records.  Elapsed time: 00:15:08s.  Time for last 1,000,000:    1s.  Last read position: chr22:50,547,876
INFO	2026-06-03 20:07:49	SinglePassSamProgram	Processed   544,000,000 records.  Elapsed time: 00:15:10s.  Time for last 1,000,000:    1s.  Last read position: chrX:3,321,547
INFO	2026-06-03 20:07:50	SinglePassSamProgram	Processed   545,000,000 records.  Elapsed time: 00:15:11s.  Time for last 1,000,000:    1s.  Last read position: chrX:17,801,416
INFO	2026-06-03 20:07:51	SinglePassSamProgram	Processed   546,000,000 records.  Elapsed time: 00:15:12s.  Time for last 1,000,000:    1s.  Last read position: chrX:40,064,516
INFO	2026-06-03 20:07:53	SinglePassSamProgram	Processed   547,000,000 records.  Elapsed time: 00:15:13s.  Time for last 1,000,000:    1s.  Last read position: chrX:47,185,428
INFO	2026-06-03 20:07:54	SinglePassSamProgram	Processed   548,000,000 records.  Elapsed time: 00:15:14s.  Time for last 1,000,000:    1s.  Last read position: chrX:49,033,495
INFO	2026-06-03 20:07:55	SinglePassSamProgram	Processed   549,000,000 records.  Elapsed time: 00:15:16s.  Time for last 1,000,000:    1s.  Last read position: chrX:53,559,034
INFO	2026-06-03 20:07:57	SinglePassSamProgram	Processed   550,000,000 records.  Elapsed time: 00:15:17s.  Time for last 1,000,000:    1s.  Last read position: chrX:68,513,330
INFO	2026-06-03 20:07:58	SinglePassSamProgram	Processed   551,000,000 records.  Elapsed time: 00:15:19s.  Time for last 1,000,000:    1s.  Last read position: chrX:72,208,417
INFO	2026-06-03 20:08:00	SinglePassSamProgram	Processed   552,000,000 records.  Elapsed time: 00:15:20s.  Time for last 1,000,000:    1s.  Last read position: chrX:81,277,157
INFO	2026-06-03 20:08:01	SinglePassSamProgram	Processed   553,000,000 records.  Elapsed time: 00:15:21s.  Time for last 1,000,000:    1s.  Last read position: chrX:114,702,175
INFO	2026-06-03 20:08:02	SinglePassSamProgram	Processed   554,000,000 records.  Elapsed time: 00:15:23s.  Time for last 1,000,000:    1s.  Last read position: chrX:130,028,736
INFO	2026-06-03 20:08:03	SinglePassSamProgram	Processed   555,000,000 records.  Elapsed time: 00:15:24s.  Time for last 1,000,000:    1s.  Last read position: chrX:153,506,880
INFO	2026-06-03 20:08:04	SinglePassSamProgram	Processed   556,000,000 records.  Elapsed time: 00:15:25s.  Time for last 1,000,000:    1s.  Last read position: chrX:154,354,154
INFO	2026-06-03 20:08:06	SinglePassSamProgram	Processed   557,000,000 records.  Elapsed time: 00:15:26s.  Time for last 1,000,000:    1s.  Last read position: chrX:154,466,622
INFO	2026-06-03 20:08:07	SinglePassSamProgram	Processed   558,000,000 records.  Elapsed time: 00:15:27s.  Time for last 1,000,000:    1s.  Last read position: GL000220.1:115,497
INFO	2026-06-03 20:08:08	SinglePassSamProgram	Processed   559,000,000 records.  Elapsed time: 00:15:28s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:131,019
INFO	2026-06-03 20:08:10	RExecutor	Executing R script via command: Rscript /tmp/script13784461921658431580.R /tmp/nxf.XXXX4nXyPH/aih-tih-sc-1274d4-R1_A23YTGFLT4_1_collectinsertsize.txt /tmp/nxf.XXXX4nXyPH/aih-tih-sc-1274d4-R1_A23YTGFLT4_1_collectinsertsize.pdf aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
ERROR	2026-06-03 20:08:10	ProcessExecutor	/bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR	2026-06-03 20:08:10	ProcessExecutor	sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR	2026-06-03 20:08:10	ProcessExecutor	sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR	2026-06-03 20:08:10	ProcessExecutor	During startup - Warning messages:
ERROR	2026-06-03 20:08:10	ProcessExecutor	1: Setting LC_CTYPE failed, using "C" 
ERROR	2026-06-03 20:08:10	ProcessExecutor	2: Setting LC_COLLATE failed, using "C" 
ERROR	2026-06-03 20:08:10	ProcessExecutor	3: Setting LC_TIME failed, using "C" 
ERROR	2026-06-03 20:08:10	ProcessExecutor	4: Setting LC_MESSAGES failed, using "C" 
ERROR	2026-06-03 20:08:10	ProcessExecutor	5: Setting LC_MONETARY failed, using "C" 
ERROR	2026-06-03 20:08:10	ProcessExecutor	6: Setting LC_PAPER failed, using "C" 
ERROR	2026-06-03 20:08:10	ProcessExecutor	7: Setting LC_MEASUREMENT failed, using "C" 
INFO	2026-06-03 20:08:10	ProcessExecutor	null device 
INFO	2026-06-03 20:08:10	ProcessExecutor	          1 
ERROR	2026-06-03 20:08:10	ProcessExecutor	sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
[Wed Jun 03 20:08:10 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 15.53 minutes.
Runtime.totalMemory()=308281344