Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/6c165ed8a637a13dec651605e0ee3f/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/d855f626b6be6785055a2f37afbbfe/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/d855f626b6be6785055a2f37afbbfe/.command.sh ==> STAGING COMPLETE (3 inputs) /usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory INFO 2026-06-03 19:52:39 RExecutor Executing R script via command: Rscript /tmp/script615832872942827997.R ERROR 2026-06-03 19:52:39 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 19:52:39 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 19:52:39 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 19:52:39 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 19:52:39 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 19:52:39 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 19:52:39 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 19:52:39 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 19:52:39 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 19:52:39 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 19:52:39 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 19:52:39 ProcessExecutor [1] "Checking if R is installed" ERROR 2026-06-03 19:52:39 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) Jun 03, 2026 7:52:39 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Wed Jun 03 19:52:39 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE aih-tih-sc-1274d4-R1_A23YTGFLT4_1_collectinsertsize.pdf --INPUT aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-1274d4-R1_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Wed Jun 03 19:52:39 GMT 2026] Executing as ?@nf-e5d855f626b6be6785055a2f37afbbfe-a8fd3-gvk4h on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 INFO 2026-06-03 19:52:41 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,387,788 INFO 2026-06-03 19:52:43 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 1s. Last read position: chr1:5,961,895 INFO 2026-06-03 19:52:44 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:9,755,092 INFO 2026-06-03 19:52:46 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:12,319,525 INFO 2026-06-03 19:52:47 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:16,633,133 INFO 2026-06-03 19:52:49 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:19,683,191 INFO 2026-06-03 19:52:51 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:21,872,301 INFO 2026-06-03 19:52:53 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:22,661,318 INFO 2026-06-03 19:52:55 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:26,280,158 INFO 2026-06-03 19:52:56 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:27,882,915 INFO 2026-06-03 19:52:58 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:32,014,319 INFO 2026-06-03 19:53:00 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:35,192,701 INFO 2026-06-03 19:53:02 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:39,285,163 INFO 2026-06-03 19:53:04 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:40,069,833 INFO 2026-06-03 19:53:06 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:43,620,124 INFO 2026-06-03 19:53:08 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:47,281,073 INFO 2026-06-03 19:53:10 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:55,081,356 INFO 2026-06-03 19:53:12 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:70,305,896 INFO 2026-06-03 19:53:13 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:89,056,118 INFO 2026-06-03 19:53:15 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:94,903,473 INFO 2026-06-03 19:53:16 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:109,252,824 INFO 2026-06-03 19:53:18 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:112,667,092 INFO 2026-06-03 19:53:20 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:116,392,965 INFO 2026-06-03 19:53:21 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:119,953,569 INFO 2026-06-03 19:53:23 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:143,419,625 INFO 2026-06-03 19:53:25 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:146,133,686 INFO 2026-06-03 19:53:26 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:148,555,080 INFO 2026-06-03 19:53:28 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:149,486,134 INFO 2026-06-03 19:53:29 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:150,333,108 INFO 2026-06-03 19:53:31 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:151,266,332 INFO 2026-06-03 19:53:33 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:153,932,664 INFO 2026-06-03 19:53:34 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:154,183,000 INFO 2026-06-03 19:53:36 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:154,970,363 INFO 2026-06-03 19:53:38 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:155,668,671 INFO 2026-06-03 19:53:39 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:156,248,526 INFO 2026-06-03 19:53:41 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:159,052,000 INFO 2026-06-03 19:53:42 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:161,051,435 INFO 2026-06-03 19:53:44 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:164,559,981 INFO 2026-06-03 19:53:46 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:171,541,689 INFO 2026-06-03 19:53:47 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:179,652,169 INFO 2026-06-03 19:53:49 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:185,299,731 INFO 2026-06-03 19:53:50 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:196,736,853 INFO 2026-06-03 19:53:52 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:201,946,179 INFO 2026-06-03 19:53:54 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:204,469,579 INFO 2026-06-03 19:53:55 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:207,887,074 INFO 2026-06-03 19:53:57 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:222,629,311 INFO 2026-06-03 19:53:59 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:226,071,719 INFO 2026-06-03 19:54:01 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:230,787,512 INFO 2026-06-03 19:54:02 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:236,142,755 INFO 2026-06-03 19:54:04 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:246,916,280 INFO 2026-06-03 19:54:05 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr2:9,913,129 INFO 2026-06-03 19:54:06 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr2:20,311,551 INFO 2026-06-03 19:54:08 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr2:26,284,139 INFO 2026-06-03 19:54:10 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr2:28,241,321 INFO 2026-06-03 19:54:11 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,254 INFO 2026-06-03 19:54:13 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-03 19:54:15 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-03 19:54:16 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr2:37,237,775 INFO 2026-06-03 19:54:18 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 2s. Last read position: chr2:43,230,984 INFO 2026-06-03 19:54:20 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr2:47,813,789 INFO 2026-06-03 19:54:22 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:55,598,869 INFO 2026-06-03 19:54:23 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr2:64,636,815 INFO 2026-06-03 19:54:25 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:71,072,640 INFO 2026-06-03 19:54:26 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:74,457,463 INFO 2026-06-03 19:54:28 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:85,840,185 INFO 2026-06-03 19:54:29 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,302 INFO 2026-06-03 19:54:31 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:96,612,816 INFO 2026-06-03 19:54:33 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:99,449,381 INFO 2026-06-03 19:54:35 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:108,672,930 INFO 2026-06-03 19:54:36 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:109,836,150 INFO 2026-06-03 19:54:38 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:112,417,258 INFO 2026-06-03 19:54:39 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:127,288,679 INFO 2026-06-03 19:54:40 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:131,592,015 INFO 2026-06-03 19:54:42 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:151,271,683 INFO 2026-06-03 19:54:44 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:161,507,388 INFO 2026-06-03 19:54:45 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:174,481,754 INFO 2026-06-03 19:54:47 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:178,651,959 INFO 2026-06-03 19:54:48 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:188,987,088 INFO 2026-06-03 19:54:49 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:189,110,378 INFO 2026-06-03 19:54:51 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:196,343,690 INFO 2026-06-03 19:54:52 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:201,479,971 INFO 2026-06-03 19:54:53 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:210,098,091 INFO 2026-06-03 19:54:55 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:215,367,953 INFO 2026-06-03 19:54:56 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,359 INFO 2026-06-03 19:54:57 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:215,379,167 INFO 2026-06-03 19:54:59 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,747 INFO 2026-06-03 19:55:01 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,791 INFO 2026-06-03 19:55:02 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,299 INFO 2026-06-03 19:55:04 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:215,422,185 INFO 2026-06-03 19:55:05 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,343 INFO 2026-06-03 19:55:06 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:218,238,835 INFO 2026-06-03 19:55:08 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:222,922,720 INFO 2026-06-03 19:55:09 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:230,503,099 INFO 2026-06-03 19:55:11 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:234,496,268 INFO 2026-06-03 19:55:12 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:237,368,607 INFO 2026-06-03 19:55:13 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:238,091,510 INFO 2026-06-03 19:55:15 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:241,670,747 INFO 2026-06-03 19:55:16 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr3:9,893,158 INFO 2026-06-03 19:55:18 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr3:13,397,392 INFO 2026-06-03 19:55:19 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr3:21,497,097 INFO 2026-06-03 19:55:21 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr3:33,828,873 INFO 2026-06-03 19:55:23 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr3:39,411,934 INFO 2026-06-03 19:55:24 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr3:44,989,162 INFO 2026-06-03 19:55:25 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr3:47,122,306 INFO 2026-06-03 19:55:27 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr3:48,469,098 INFO 2026-06-03 19:55:28 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr3:49,057,093 INFO 2026-06-03 19:55:30 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr3:49,706,028 INFO 2026-06-03 19:55:31 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr3:51,393,386 INFO 2026-06-03 19:55:33 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr3:52,561,787 INFO 2026-06-03 19:55:35 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr3:58,078,787 INFO 2026-06-03 19:55:37 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr3:68,636,592 INFO 2026-06-03 19:55:38 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr3:99,850,463 INFO 2026-06-03 19:55:40 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr3:111,913,376 INFO 2026-06-03 19:55:42 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr3:119,587,567 INFO 2026-06-03 19:55:44 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr3:122,700,217 INFO 2026-06-03 19:55:45 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr3:126,727,110 INFO 2026-06-03 19:55:47 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr3:129,556,405 INFO 2026-06-03 19:55:48 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr3:136,195,021 INFO 2026-06-03 19:55:50 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr3:146,517,066 INFO 2026-06-03 19:55:51 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:148,857,466 INFO 2026-06-03 19:55:53 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:156,554,970 INFO 2026-06-03 19:55:54 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr3:172,247,753 INFO 2026-06-03 19:55:56 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:184,166,615 INFO 2026-06-03 19:55:58 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:187,043,066 INFO 2026-06-03 19:55:59 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:195,866,975 INFO 2026-06-03 19:56:00 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr4:792,440 INFO 2026-06-03 19:56:02 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr4:2,716,022 INFO 2026-06-03 19:56:03 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr4:7,816,049 INFO 2026-06-03 19:56:05 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr4:25,234,228 INFO 2026-06-03 19:56:06 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr4:41,100,721 INFO 2026-06-03 19:56:08 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr4:56,486,360 INFO 2026-06-03 19:56:09 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr4:75,012,917 INFO 2026-06-03 19:56:11 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr4:77,066,249 INFO 2026-06-03 19:56:13 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr4:87,457,903 INFO 2026-06-03 19:56:15 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 2s. Last read position: chr4:102,802,596 INFO 2026-06-03 19:56:16 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr4:119,502,642 INFO 2026-06-03 19:56:18 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr4:140,622,835 INFO 2026-06-03 19:56:19 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr4:151,174,894 INFO 2026-06-03 19:56:20 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr4:168,878,252 INFO 2026-06-03 19:56:22 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr5:891,155 INFO 2026-06-03 19:56:23 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr5:14,374,255 INFO 2026-06-03 19:56:25 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr5:32,599,039 INFO 2026-06-03 19:56:26 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr5:39,202,700 INFO 2026-06-03 19:56:28 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr5:55,941,141 INFO 2026-06-03 19:56:30 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr5:67,184,486 INFO 2026-06-03 19:56:31 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr5:71,632,153 INFO 2026-06-03 19:56:32 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr5:78,421,801 INFO 2026-06-03 19:56:34 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr5:83,538,835 INFO 2026-06-03 19:56:35 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr5:95,731,671 INFO 2026-06-03 19:56:36 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr5:112,864,798 INFO 2026-06-03 19:56:37 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr5:131,439,620 INFO 2026-06-03 19:56:39 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr5:134,811,825 INFO 2026-06-03 19:56:41 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr5:139,307,898 INFO 2026-06-03 19:56:42 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr5:141,246,954 INFO 2026-06-03 19:56:43 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr5:146,459,166 INFO 2026-06-03 19:56:45 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr5:150,134,860 INFO 2026-06-03 19:56:46 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,601 INFO 2026-06-03 19:56:47 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,117 INFO 2026-06-03 19:56:48 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,246 INFO 2026-06-03 19:56:50 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr5:151,664,157 INFO 2026-06-03 19:56:51 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr5:168,244,587 INFO 2026-06-03 19:56:53 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr5:171,910,753 INFO 2026-06-03 19:56:54 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr5:177,307,583 INFO 2026-06-03 19:56:56 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr5:179,618,308 INFO 2026-06-03 19:56:58 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr5:179,836,648 INFO 2026-06-03 19:57:00 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr6:3,225,287 INFO 2026-06-03 19:57:01 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr6:12,120,283 INFO 2026-06-03 19:57:03 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr6:25,610,105 INFO 2026-06-03 19:57:05 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr6:27,866,952 INFO 2026-06-03 19:57:06 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr6:30,490,459 INFO 2026-06-03 19:57:08 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,838 INFO 2026-06-03 19:57:10 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr6:31,660,057 INFO 2026-06-03 19:57:12 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr6:31,943,913 INFO 2026-06-03 19:57:13 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr6:32,179,908 INFO 2026-06-03 19:57:15 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr6:32,850,375 INFO 2026-06-03 19:57:17 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr6:33,277,750 INFO 2026-06-03 19:57:19 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr6:34,288,802 INFO 2026-06-03 19:57:20 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr6:38,152,297 INFO 2026-06-03 19:57:22 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr6:43,339,768 INFO 2026-06-03 19:57:24 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr6:53,012,198 INFO 2026-06-03 19:57:25 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr6:73,471,494 INFO 2026-06-03 19:57:27 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr6:85,427,596 INFO 2026-06-03 19:57:29 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr6:99,551,879 INFO 2026-06-03 19:57:31 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr6:112,148,239 INFO 2026-06-03 19:57:33 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr6:128,929,444 INFO 2026-06-03 19:57:35 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr6:138,430,516 INFO 2026-06-03 19:57:36 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr6:149,409,575 INFO 2026-06-03 19:57:38 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr6:154,824,243 INFO 2026-06-03 19:57:40 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr6:159,041,443 INFO 2026-06-03 19:57:42 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr6:168,549,175 INFO 2026-06-03 19:57:44 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr7:1,497,228 INFO 2026-06-03 19:57:46 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr7:5,315,983 INFO 2026-06-03 19:57:47 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,496 INFO 2026-06-03 19:57:49 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr7:6,600,019 INFO 2026-06-03 19:57:51 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr7:26,185,027 INFO 2026-06-03 19:57:52 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr7:36,894,861 INFO 2026-06-03 19:57:54 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr7:44,110,080 INFO 2026-06-03 19:57:56 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr7:47,424,155 INFO 2026-06-03 19:57:58 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr7:70,764,834 INFO 2026-06-03 19:58:00 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr7:73,769,335 INFO 2026-06-03 19:58:01 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr7:75,421,889 INFO 2026-06-03 19:58:02 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr7:76,978,608 INFO 2026-06-03 19:58:03 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr7:92,022,988 INFO 2026-06-03 19:58:05 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr7:94,407,874 INFO 2026-06-03 19:58:07 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr7:98,890,384 INFO 2026-06-03 19:58:09 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr7:100,158,222 INFO 2026-06-03 19:58:10 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,144 INFO 2026-06-03 19:58:11 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr7:102,659,770 INFO 2026-06-03 19:58:13 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr7:108,182,907 INFO 2026-06-03 19:58:14 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr7:127,990,969 INFO 2026-06-03 19:58:16 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr7:134,958,227 INFO 2026-06-03 19:58:18 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr7:139,716,726 INFO 2026-06-03 19:58:20 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr7:143,390,573 INFO 2026-06-03 19:58:22 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr7:150,284,803 INFO 2026-06-03 19:58:23 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr7:151,490,958 INFO 2026-06-03 19:58:25 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr7:158,934,207 INFO 2026-06-03 19:58:27 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr8:17,543,655 INFO 2026-06-03 19:58:29 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr8:22,606,998 INFO 2026-06-03 19:58:30 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr8:27,658,913 INFO 2026-06-03 19:58:32 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr8:38,253,627 INFO 2026-06-03 19:58:33 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr8:41,509,654 INFO 2026-06-03 19:58:35 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr8:53,841,610 INFO 2026-06-03 19:58:36 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr8:67,343,193 INFO 2026-06-03 19:58:37 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr8:84,911,764 INFO 2026-06-03 19:58:38 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr8:98,950,707 INFO 2026-06-03 19:58:40 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr8:103,140,896 INFO 2026-06-03 19:58:41 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr8:123,254,409 INFO 2026-06-03 19:58:42 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr8:140,451,043 INFO 2026-06-03 19:58:44 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,818,193 INFO 2026-06-03 19:58:46 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,751 INFO 2026-06-03 19:58:47 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,279 INFO 2026-06-03 19:58:49 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,938,230 INFO 2026-06-03 19:58:50 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr8:144,501,149 INFO 2026-06-03 19:58:52 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr9:5,769,021 INFO 2026-06-03 19:58:54 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr9:19,378,896 INFO 2026-06-03 19:58:55 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr9:34,489,384 INFO 2026-06-03 19:58:57 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr9:35,714,812 INFO 2026-06-03 19:58:59 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr9:68,303,290 INFO 2026-06-03 19:59:01 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr9:84,745,054 INFO 2026-06-03 19:59:02 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr9:93,084,536 INFO 2026-06-03 19:59:04 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr9:99,129,003 INFO 2026-06-03 19:59:06 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr9:111,420,067 INFO 2026-06-03 19:59:07 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr9:114,423,363 INFO 2026-06-03 19:59:09 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr9:121,302,010 INFO 2026-06-03 19:59:11 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr9:125,239,467 INFO 2026-06-03 19:59:12 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr9:128,105,782 INFO 2026-06-03 19:59:14 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr9:128,908,299 INFO 2026-06-03 19:59:16 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr9:130,884,348 INFO 2026-06-03 19:59:18 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr9:132,402,558 INFO 2026-06-03 19:59:19 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr9:134,774,886 INFO 2026-06-03 19:59:21 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr9:136,496,291 INFO 2026-06-03 19:59:23 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr9:137,113,206 INFO 2026-06-03 19:59:25 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr10:836,402 INFO 2026-06-03 19:59:26 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr10:7,284,132 INFO 2026-06-03 19:59:28 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr10:17,229,381 INFO 2026-06-03 19:59:30 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr10:26,500,929 INFO 2026-06-03 19:59:31 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr10:32,018,536 INFO 2026-06-03 19:59:33 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr10:37,169,701 INFO 2026-06-03 19:59:35 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr10:45,719,860 INFO 2026-06-03 19:59:37 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr10:49,046,983 INFO 2026-06-03 19:59:38 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr10:63,222,408 INFO 2026-06-03 19:59:40 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr10:72,063,133 INFO 2026-06-03 19:59:41 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr10:74,975,411 INFO 2026-06-03 19:59:43 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr10:84,373,684 INFO 2026-06-03 19:59:45 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr10:89,402,402 INFO 2026-06-03 19:59:47 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr10:95,872,871 INFO 2026-06-03 19:59:49 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr10:100,516,842 INFO 2026-06-03 19:59:50 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr10:102,572,732 INFO 2026-06-03 19:59:52 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr10:113,876,821 INFO 2026-06-03 19:59:53 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr10:121,564,505 INFO 2026-06-03 19:59:55 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr10:130,169,455 INFO 2026-06-03 19:59:57 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr11:319,795 INFO 2026-06-03 19:59:59 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr11:770,994 INFO 2026-06-03 20:00:00 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,685 INFO 2026-06-03 20:00:02 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,359 INFO 2026-06-03 20:00:04 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr11:1,251,355 INFO 2026-06-03 20:00:06 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr11:3,744,608 INFO 2026-06-03 20:00:07 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr11:7,509,910 INFO 2026-06-03 20:00:09 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr11:11,621,411 INFO 2026-06-03 20:00:11 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr11:20,045,251 INFO 2026-06-03 20:00:12 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr11:43,391,547 INFO 2026-06-03 20:00:14 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr11:47,173,426 INFO 2026-06-03 20:00:16 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr11:57,543,181 INFO 2026-06-03 20:00:17 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr11:59,787,120 INFO 2026-06-03 20:00:19 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr11:61,891,189 INFO 2026-06-03 20:00:21 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr11:62,522,921 INFO 2026-06-03 20:00:22 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr11:62,529,958 INFO 2026-06-03 20:00:24 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr11:62,648,242 INFO 2026-06-03 20:00:26 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr11:64,226,981 INFO 2026-06-03 20:00:27 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr11:65,014,211 INFO 2026-06-03 20:00:29 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr11:65,582,465 INFO 2026-06-03 20:00:31 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr11:65,890,852 INFO 2026-06-03 20:00:33 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr11:66,707,677 INFO 2026-06-03 20:00:34 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr11:67,501,974 INFO 2026-06-03 20:00:36 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr11:70,272,398 INFO 2026-06-03 20:00:38 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr11:72,238,164 INFO 2026-06-03 20:00:39 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr11:75,204,441 INFO 2026-06-03 20:00:41 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr11:83,166,450 INFO 2026-06-03 20:00:42 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr11:96,092,588 INFO 2026-06-03 20:00:44 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr11:108,365,405 INFO 2026-06-03 20:00:45 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr11:118,214,857 INFO 2026-06-03 20:00:46 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr11:118,901,018 INFO 2026-06-03 20:00:48 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr11:123,059,659 INFO 2026-06-03 20:00:49 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr11:130,135,605 INFO 2026-06-03 20:00:51 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr12:1,593,917 INFO 2026-06-03 20:00:52 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr12:6,537,605 INFO 2026-06-03 20:00:54 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr12:7,061,777 INFO 2026-06-03 20:00:56 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr12:9,009,036 INFO 2026-06-03 20:00:58 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr12:10,867,931 INFO 2026-06-03 20:00:59 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr12:16,363,802 INFO 2026-06-03 20:01:01 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 2s. Last read position: chr12:31,298,123 INFO 2026-06-03 20:01:03 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr12:45,926,301 INFO 2026-06-03 20:01:05 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr12:49,032,516 INFO 2026-06-03 20:01:06 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr12:49,637,429 INFO 2026-06-03 20:01:08 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr12:51,807,258 INFO 2026-06-03 20:01:10 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr12:53,309,621 INFO 2026-06-03 20:01:11 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr12:54,345,500 INFO 2026-06-03 20:01:13 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr12:56,131,508 INFO 2026-06-03 20:01:15 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr12:56,604,566 INFO 2026-06-03 20:01:17 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr12:57,099,995 INFO 2026-06-03 20:01:18 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr12:57,206,546 INFO 2026-06-03 20:01:20 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr12:57,829,507 INFO 2026-06-03 20:01:22 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr12:69,239,688 INFO 2026-06-03 20:01:24 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr12:88,090,805 INFO 2026-06-03 20:01:25 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr12:96,247,121 INFO 2026-06-03 20:01:27 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 2s. Last read position: chr12:104,321,297 INFO 2026-06-03 20:01:29 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr12:109,938,445 INFO 2026-06-03 20:01:31 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr12:112,243,994 INFO 2026-06-03 20:01:33 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr12:113,358,710 INFO 2026-06-03 20:01:35 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr12:120,209,861 INFO 2026-06-03 20:01:37 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr12:122,133,395 INFO 2026-06-03 20:01:38 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr12:124,326,283 INFO 2026-06-03 20:01:40 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr12:131,941,863 INFO 2026-06-03 20:01:42 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr12:133,120,678 INFO 2026-06-03 20:01:44 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 2s. Last read position: chr13:25,171,081 INFO 2026-06-03 20:01:46 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr13:37,569,791 INFO 2026-06-03 20:01:47 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr13:44,574,886 INFO 2026-06-03 20:01:49 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr13:51,382,043 INFO 2026-06-03 20:01:50 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr13:81,690,599 INFO 2026-06-03 20:01:52 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr13:110,175,223 INFO 2026-06-03 20:01:54 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr13:113,631,676 INFO 2026-06-03 20:01:56 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr14:21,401,054 INFO 2026-06-03 20:01:57 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr14:23,522,814 INFO 2026-06-03 20:01:59 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr14:24,300,500 INFO 2026-06-03 20:02:01 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr14:35,308,060 INFO 2026-06-03 20:02:03 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,743 INFO 2026-06-03 20:02:04 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr14:52,878,646 INFO 2026-06-03 20:02:06 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr14:61,052,040 INFO 2026-06-03 20:02:07 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr14:64,523,319 INFO 2026-06-03 20:02:09 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr14:69,386,947 INFO 2026-06-03 20:02:10 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr14:73,729,915 INFO 2026-06-03 20:02:12 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr14:75,963,422 INFO 2026-06-03 20:02:14 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr14:90,401,363 INFO 2026-06-03 20:02:15 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr14:94,111,672 INFO 2026-06-03 20:02:17 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr14:100,141,780 INFO 2026-06-03 20:02:19 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 2s. Last read position: chr14:102,085,421 INFO 2026-06-03 20:02:21 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr14:104,772,981 INFO 2026-06-03 20:02:22 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr14:105,624,641 INFO 2026-06-03 20:02:24 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,532 INFO 2026-06-03 20:02:26 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,780 INFO 2026-06-03 20:02:27 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,137 INFO 2026-06-03 20:02:29 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr15:28,667,225 INFO 2026-06-03 20:02:31 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr15:34,386,788 INFO 2026-06-03 20:02:32 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr15:40,813,965 INFO 2026-06-03 20:02:34 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr15:42,735,543 INFO 2026-06-03 20:02:36 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr15:44,629,240 INFO 2026-06-03 20:02:37 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr15:50,631,440 INFO 2026-06-03 20:02:40 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 2s. Last read position: chr15:58,627,700 INFO 2026-06-03 20:02:41 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr15:61,974,379 INFO 2026-06-03 20:02:43 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr15:64,072,983 INFO 2026-06-03 20:02:45 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr15:65,595,749 INFO 2026-06-03 20:02:46 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr15:70,851,572 INFO 2026-06-03 20:02:48 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr15:73,994,931 INFO 2026-06-03 20:02:50 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr15:74,937,925 INFO 2026-06-03 20:02:52 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr15:77,025,547 INFO 2026-06-03 20:02:53 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr15:81,299,781 INFO 2026-06-03 20:02:55 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr15:85,579,608 INFO 2026-06-03 20:02:57 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr15:90,390,846 INFO 2026-06-03 20:02:59 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr15:97,960,876 INFO 2026-06-03 20:03:01 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr16:86,707 INFO 2026-06-03 20:03:02 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr16:1,438,058 INFO 2026-06-03 20:03:04 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr16:2,102,469 INFO 2026-06-03 20:03:06 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 2s. Last read position: chr16:2,763,711 INFO 2026-06-03 20:03:08 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr16:3,563,269 INFO 2026-06-03 20:03:10 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 2s. Last read position: chr16:5,091,533 INFO 2026-06-03 20:03:12 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr16:14,246,687 INFO 2026-06-03 20:03:14 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr16:15,137,077 INFO 2026-06-03 20:03:16 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr16:16,358,594 INFO 2026-06-03 20:03:17 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr16:18,395,889 INFO 2026-06-03 20:03:19 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr16:21,403,395 INFO 2026-06-03 20:03:21 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr16:21,834,818 INFO 2026-06-03 20:03:22 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr16:22,347,391 INFO 2026-06-03 20:03:24 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr16:22,535,236 INFO 2026-06-03 20:03:26 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr16:28,106,102 INFO 2026-06-03 20:03:28 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr16:29,097,243 INFO 2026-06-03 20:03:30 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr16:29,491,848 INFO 2026-06-03 20:03:32 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr16:30,082,746 INFO 2026-06-03 20:03:34 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr16:30,353,373 INFO 2026-06-03 20:03:36 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr16:30,784,351 INFO 2026-06-03 20:03:38 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr16:31,362,162 INFO 2026-06-03 20:03:40 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr16:51,646,716 INFO 2026-06-03 20:03:42 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 2s. Last read position: chr16:56,940,173 INFO 2026-06-03 20:03:44 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 2s. Last read position: chr16:64,973,001 INFO 2026-06-03 20:03:46 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr16:67,908,709 INFO 2026-06-03 20:03:48 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr16:69,748,936 INFO 2026-06-03 20:03:50 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr16:72,787,698 INFO 2026-06-03 20:03:52 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr16:83,808,006 INFO 2026-06-03 20:03:53 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr16:87,981,082 INFO 2026-06-03 20:03:55 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr16:89,100,727 INFO 2026-06-03 20:03:57 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr17:674,813 INFO 2026-06-03 20:03:58 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr17:1,775,094 INFO 2026-06-03 20:04:00 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr17:4,184,841 INFO 2026-06-03 20:04:02 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr17:5,558,900 INFO 2026-06-03 20:04:03 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr17:7,497,779 INFO 2026-06-03 20:04:05 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr17:7,945,714 INFO 2026-06-03 20:04:07 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr17:16,171,829 INFO 2026-06-03 20:04:08 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr17:18,254,609 INFO 2026-06-03 20:04:10 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 2s. Last read position: chr17:28,396,188 INFO 2026-06-03 20:04:12 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr17:29,534,122 INFO 2026-06-03 20:04:14 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr17:32,369,651 INFO 2026-06-03 20:04:16 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr17:35,878,600 INFO 2026-06-03 20:04:17 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr17:38,008,696 INFO 2026-06-03 20:04:19 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr17:38,719,771 INFO 2026-06-03 20:04:21 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr17:38,878,175 INFO 2026-06-03 20:04:23 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 2s. Last read position: chr17:39,517,484 INFO 2026-06-03 20:04:25 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr17:39,709,756 INFO 2026-06-03 20:04:27 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,780 INFO 2026-06-03 20:04:28 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,618 INFO 2026-06-03 20:04:30 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr17:39,727,359 INFO 2026-06-03 20:04:32 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr17:40,088,440 INFO 2026-06-03 20:04:34 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr17:41,523,960 INFO 2026-06-03 20:04:36 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr17:42,329,616 INFO 2026-06-03 20:04:37 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr17:44,091,725 INFO 2026-06-03 20:04:39 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr17:45,513,965 INFO 2026-06-03 20:04:40 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr17:47,612,510 INFO 2026-06-03 20:04:42 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr17:49,707,756 INFO 2026-06-03 20:04:44 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,014 INFO 2026-06-03 20:04:46 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,987 INFO 2026-06-03 20:04:47 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,827 INFO 2026-06-03 20:04:49 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,961 INFO 2026-06-03 20:04:51 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,457 INFO 2026-06-03 20:04:53 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,049 INFO 2026-06-03 20:04:54 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,918 INFO 2026-06-03 20:04:56 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr17:57,974,504 INFO 2026-06-03 20:04:58 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr17:59,647,522 INFO 2026-06-03 20:05:00 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr17:59,668,803 INFO 2026-06-03 20:05:02 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr17:59,683,107 INFO 2026-06-03 20:05:03 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr17:60,049,654 INFO 2026-06-03 20:05:05 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr17:62,552,307 INFO 2026-06-03 20:05:07 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 2s. Last read position: chr17:64,153,113 INFO 2026-06-03 20:05:09 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr17:64,821,808 INFO 2026-06-03 20:05:11 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr17:68,037,363 INFO 2026-06-03 20:05:13 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr17:73,201,641 INFO 2026-06-03 20:05:15 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr17:75,589,862 INFO 2026-06-03 20:05:17 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr17:76,570,602 INFO 2026-06-03 20:05:19 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr17:78,798,998 INFO 2026-06-03 20:05:21 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr17:80,039,911 INFO 2026-06-03 20:05:23 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr17:80,295,716 INFO 2026-06-03 20:05:24 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr17:80,345,990 INFO 2026-06-03 20:05:26 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr17:80,376,912 INFO 2026-06-03 20:05:28 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr17:81,700,497 INFO 2026-06-03 20:05:30 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 2s. Last read position: chr17:82,084,370 INFO 2026-06-03 20:05:32 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 2s. Last read position: chr17:82,586,060 INFO 2026-06-03 20:05:34 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 2s. Last read position: chr18:8,706,350 INFO 2026-06-03 20:05:36 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr18:23,518,893 INFO 2026-06-03 20:05:38 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 2s. Last read position: chr18:36,171,065 INFO 2026-06-03 20:05:40 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 2s. Last read position: chr18:55,275,709 INFO 2026-06-03 20:05:42 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr18:74,263,377 INFO 2026-06-03 20:05:44 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr19:902,016 INFO 2026-06-03 20:05:45 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr19:1,272,440 INFO 2026-06-03 20:05:47 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr19:2,243,530 INFO 2026-06-03 20:05:49 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 2s. Last read position: chr19:4,054,722 INFO 2026-06-03 20:05:51 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 2s. Last read position: chr19:5,789,390 INFO 2026-06-03 20:05:53 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr19:6,713,487 INFO 2026-06-03 20:05:54 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr19:8,455,535 INFO 2026-06-03 20:05:56 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr19:10,119,112 INFO 2026-06-03 20:05:58 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr19:11,033,301 INFO 2026-06-03 20:06:00 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr19:12,731,040 INFO 2026-06-03 20:06:01 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr19:14,397,712 INFO 2026-06-03 20:06:03 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr19:15,254,231 INFO 2026-06-03 20:06:05 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr19:17,102,347 INFO 2026-06-03 20:06:06 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr19:18,134,689 INFO 2026-06-03 20:06:08 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr19:19,146,809 INFO 2026-06-03 20:06:09 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr19:33,206,079 INFO 2026-06-03 20:06:11 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 2s. Last read position: chr19:35,716,595 INFO 2026-06-03 20:06:13 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr19:38,283,753 INFO 2026-06-03 20:06:15 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr19:39,408,366 INFO 2026-06-03 20:06:17 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr19:40,588,684 INFO 2026-06-03 20:06:18 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr19:41,755,672 INFO 2026-06-03 20:06:20 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr19:42,232,098 INFO 2026-06-03 20:06:21 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr19:43,596,707 INFO 2026-06-03 20:06:22 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr19:45,164,176 INFO 2026-06-03 20:06:24 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr19:46,918,826 INFO 2026-06-03 20:06:26 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 2s. Last read position: chr19:48,473,965 INFO 2026-06-03 20:06:28 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 2s. Last read position: chr19:49,468,454 INFO 2026-06-03 20:06:30 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr19:49,805,720 INFO 2026-06-03 20:06:32 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr19:51,372,463 INFO 2026-06-03 20:06:33 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr19:54,158,391 INFO 2026-06-03 20:06:36 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 2s. Last read position: chr19:55,239,451 INFO 2026-06-03 20:06:38 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 2s. Last read position: chr19:57,552,356 INFO 2026-06-03 20:06:39 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr19:58,549,125 INFO 2026-06-03 20:06:41 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 2s. Last read position: chr20:3,166,769 INFO 2026-06-03 20:06:43 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr20:13,776,010 INFO 2026-06-03 20:06:45 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr20:23,826,445 INFO 2026-06-03 20:06:48 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 2s. Last read position: chr20:32,428,346 INFO 2026-06-03 20:06:49 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr20:34,757,475 INFO 2026-06-03 20:06:51 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr20:35,542,095 INFO 2026-06-03 20:06:53 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr20:35,714,200 INFO 2026-06-03 20:06:55 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr20:37,203,913 INFO 2026-06-03 20:06:56 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr20:41,165,343 INFO 2026-06-03 20:06:58 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr20:45,416,160 INFO 2026-06-03 20:07:00 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr20:47,652,417 INFO 2026-06-03 20:07:02 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr20:49,238,978 INFO 2026-06-03 20:07:04 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr20:50,892,857 INFO 2026-06-03 20:07:06 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr20:56,365,137 INFO 2026-06-03 20:07:08 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr20:58,981,344 INFO 2026-06-03 20:07:10 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr20:62,333,590 INFO 2026-06-03 20:07:12 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr20:63,287,611 INFO 2026-06-03 20:07:13 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr20:63,697,023 INFO 2026-06-03 20:07:14 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr21:8,207,090 INFO 2026-06-03 20:07:15 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,960 INFO 2026-06-03 20:07:17 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr21:25,982,403 INFO 2026-06-03 20:07:18 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr21:33,557,162 INFO 2026-06-03 20:07:20 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr21:39,348,547 INFO 2026-06-03 20:07:22 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr21:44,231,380 INFO 2026-06-03 20:07:23 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr21:45,992,028 INFO 2026-06-03 20:07:25 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr21:46,126,176 INFO 2026-06-03 20:07:27 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr22:19,385,671 INFO 2026-06-03 20:07:29 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr22:21,387,553 INFO 2026-06-03 20:07:30 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr22:23,800,983 INFO 2026-06-03 20:07:31 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr22:28,795,280 INFO 2026-06-03 20:07:33 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,276 INFO 2026-06-03 20:07:34 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr22:31,099,863 INFO 2026-06-03 20:07:36 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr22:35,419,896 INFO 2026-06-03 20:07:37 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr22:36,305,974 INFO 2026-06-03 20:07:39 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr22:37,303,296 INFO 2026-06-03 20:07:40 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr22:38,485,908 INFO 2026-06-03 20:07:41 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr22:39,521,658 INFO 2026-06-03 20:07:42 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr22:41,436,597 INFO 2026-06-03 20:07:43 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr22:42,693,730 INFO 2026-06-03 20:07:45 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr22:46,536,519 INFO 2026-06-03 20:07:47 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr22:50,290,046 INFO 2026-06-03 20:07:48 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr22:50,547,876 INFO 2026-06-03 20:07:49 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chrX:3,321,547 INFO 2026-06-03 20:07:50 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chrX:17,801,416 INFO 2026-06-03 20:07:51 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chrX:40,064,516 INFO 2026-06-03 20:07:53 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chrX:47,185,428 INFO 2026-06-03 20:07:54 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chrX:49,033,495 INFO 2026-06-03 20:07:55 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chrX:53,559,034 INFO 2026-06-03 20:07:57 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chrX:68,513,330 INFO 2026-06-03 20:07:58 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chrX:72,208,417 INFO 2026-06-03 20:08:00 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chrX:81,277,157 INFO 2026-06-03 20:08:01 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chrX:114,702,175 INFO 2026-06-03 20:08:02 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chrX:130,028,736 INFO 2026-06-03 20:08:03 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chrX:153,506,880 INFO 2026-06-03 20:08:04 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chrX:154,354,154 INFO 2026-06-03 20:08:06 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chrX:154,466,622 INFO 2026-06-03 20:08:07 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,497 INFO 2026-06-03 20:08:08 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,019 INFO 2026-06-03 20:08:10 RExecutor Executing R script via command: Rscript /tmp/script13784461921658431580.R /tmp/nxf.XXXX4nXyPH/aih-tih-sc-1274d4-R1_A23YTGFLT4_1_collectinsertsize.txt /tmp/nxf.XXXX4nXyPH/aih-tih-sc-1274d4-R1_A23YTGFLT4_1_collectinsertsize.pdf aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam ERROR 2026-06-03 20:08:10 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:08:10 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:08:10 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:08:10 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 20:08:10 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 20:08:10 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 20:08:10 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 20:08:10 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 20:08:10 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 20:08:10 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 20:08:10 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 20:08:10 ProcessExecutor null device INFO 2026-06-03 20:08:10 ProcessExecutor 1 ERROR 2026-06-03 20:08:10 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) [Wed Jun 03 20:08:10 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 15.53 minutes. Runtime.totalMemory()=308281344