Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/f0dc8f2fcbe94c3098e95073d0ed28/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/b052912e48a15eef7582c8d6b0694c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/b052912e48a15eef7582c8d6b0694c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/60742acd8016a21773b54e1e7902a4/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 338861066
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	338861066
Known Splicing Events:	334719490
Partial Novel Splicing Events:	1880686
Novel Splicing Events:	2105099
Filtered Splicing Events:	155791

Total splicing  Junctions:	645194
Known Splicing Junctions:	297469
Partial Novel Splicing Junctions:	203166
Novel Splicing Junctions:	144559

===================================================================
Create BED file ...
Create Interact file ...