Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ctat_ref_annot.interval_list
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/52e4324aa8a56b7112cbab09c4e0d2/aih-tih-sc-184b05-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/e7b5f474365304c8ce0d9c74f0f897/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/e7b5f474365304c8ce0d9c74f0f897/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/8ad8b09b17fea376049af06d728e81/aih-tih-sc-184b05-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ref_annot.gtf.refflat
==> STAGING COMPLETE (6 inputs)
/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
Jun 03, 2026 8:45:59 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Wed Jun 03 20:45:59 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT aih-tih-sc-184b05-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-184b05-R1_A23YTGFLT4_1_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Wed Jun 03 20:45:59 GMT 2026] Executing as ?@nf-99e7b5f474365304c8ce0d9c74f0f897-e603f-bzqc5 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
WARNING: BAM index file /tmp/nxf.XXXX6I6vME/aih-tih-sc-184b05-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXX6I6vME/aih-tih-sc-184b05-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
INFO 2026-06-03 20:46:02 CollectRnaSeqMetrics Loaded 58279 genes.
INFO 2026-06-03 20:46:14 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 11s. Last read position: chr1:1,054,486
INFO 2026-06-03 20:46:26 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 12s. Last read position: chr1:1,437,270
INFO 2026-06-03 20:46:38 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 11s. Last read position: chr1:2,050,643
INFO 2026-06-03 20:46:47 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 9s. Last read position: chr1:3,835,005
INFO 2026-06-03 20:46:58 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 11s. Last read position: chr1:8,360,453
INFO 2026-06-03 20:47:09 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 10s. Last read position: chr1:10,629,796
INFO 2026-06-03 20:47:17 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 8s. Last read position: chr1:11,926,050
INFO 2026-06-03 20:47:31 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 13s. Last read position: chr1:15,807,561
INFO 2026-06-03 20:47:37 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 5s. Last read position: chr1:16,986,224
INFO 2026-06-03 20:47:53 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 16s. Last read position: chr1:19,210,075
INFO 2026-06-03 20:47:58 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 4s. Last read position: chr1:20,652,935
INFO 2026-06-03 20:48:12 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 14s. Last read position: chr1:21,864,199
INFO 2026-06-03 20:48:21 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 9s. Last read position: chr1:23,193,506
INFO 2026-06-03 20:48:28 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 7s. Last read position: chr1:25,617,778
INFO 2026-06-03 20:48:39 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 10s. Last read position: chr1:26,774,384
INFO 2026-06-03 20:48:46 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 6s. Last read position: chr1:28,236,133
INFO 2026-06-03 20:48:56 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 10s. Last read position: chr1:31,665,120
INFO 2026-06-03 20:49:08 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 11s. Last read position: chr1:32,771,757
INFO 2026-06-03 20:49:15 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 6s. Last read position: chr1:35,557,787
INFO 2026-06-03 20:49:21 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 6s. Last read position: chr1:39,231,187
INFO 2026-06-03 20:50:12 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 50s. Last read position: chr1:41,046,449
INFO 2026-06-03 20:50:27 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 15s. Last read position: chr1:43,553,561
INFO 2026-06-03 20:50:43 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 15s. Last read position: chr1:44,776,043
INFO 2026-06-03 20:50:53 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 10s. Last read position: chr1:46,198,521
INFO 2026-06-03 20:51:04 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 11s. Last read position: chr1:52,397,789
INFO 2026-06-03 20:51:15 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 10s. Last read position: chr1:55,052,298
INFO 2026-06-03 20:51:31 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 16s. Last read position: chr1:67,425,148
INFO 2026-06-03 20:51:41 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 9s. Last read position: chr1:86,499,923
INFO 2026-06-03 20:51:48 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 7s. Last read position: chr1:100,027,229
INFO 2026-06-03 20:52:04 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 15s. Last read position: chr1:109,668,458
INFO 2026-06-03 20:52:13 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 9s. Last read position: chr1:111,459,488
INFO 2026-06-03 20:52:22 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 8s. Last read position: chr1:114,510,710
INFO 2026-06-03 20:52:35 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 12s. Last read position: chr1:116,544,519
INFO 2026-06-03 20:52:40 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 5s. Last read position: chr1:120,808,675
INFO 2026-06-03 20:52:46 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 5s. Last read position: chr1:146,972,779
INFO 2026-06-03 20:52:56 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 10s. Last read position: chr1:149,455,545
INFO 2026-06-03 20:52:58 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 2s. Last read position: chr1:149,934,986
INFO 2026-06-03 20:53:07 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 8s. Last read position: chr1:151,024,720
INFO 2026-06-03 20:53:16 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 8s. Last read position: chr1:151,639,012
INFO 2026-06-03 20:53:23 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 6s. Last read position: chr1:153,991,585
INFO 2026-06-03 20:53:38 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 15s. Last read position: chr1:154,586,241
INFO 2026-06-03 20:53:58 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 19s. Last read position: chr1:155,169,845
INFO 2026-06-03 20:54:16 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 18s. Last read position: chr1:155,752,515
INFO 2026-06-03 20:54:34 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 18s. Last read position: chr1:156,136,390
INFO 2026-06-03 20:54:52 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 18s. Last read position: chr1:156,743,411
INFO 2026-06-03 20:55:03 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 10s. Last read position: chr1:160,323,518
INFO 2026-06-03 20:55:19 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 16s. Last read position: chr1:165,649,842
INFO 2026-06-03 20:55:23 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 4s. Last read position: chr1:169,131,300
INFO 2026-06-03 20:55:34 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 10s. Last read position: chr1:177,958,887
INFO 2026-06-03 20:55:40 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 6s. Last read position: chr1:184,477,512
INFO 2026-06-03 20:55:49 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 8s. Last read position: chr1:200,899,534
INFO 2026-06-03 20:55:57 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 7s. Last read position: chr1:202,540,067
INFO 2026-06-03 20:56:09 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 12s. Last read position: chr1:204,469,685
INFO 2026-06-03 20:56:16 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 6s. Last read position: chr1:206,931,504
INFO 2026-06-03 20:56:18 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 2s. Last read position: chr1:206,935,556
INFO 2026-06-03 20:56:21 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 2s. Last read position: chr1:206,939,435
INFO 2026-06-03 20:56:28 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 7s. Last read position: chr1:211,313,686
INFO 2026-06-03 20:56:34 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 5s. Last read position: chr1:223,550,961
INFO 2026-06-03 20:56:42 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 8s. Last read position: chr1:226,407,810
INFO 2026-06-03 20:57:03 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 21s. Last read position: chr1:229,518,323
INFO 2026-06-03 20:57:10 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 6s. Last read position: chr1:235,252,748
INFO 2026-06-03 20:57:27 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 16s. Last read position: chr1:246,861,961
INFO 2026-06-03 20:57:36 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 8s. Last read position: chr2:10,122,996
INFO 2026-06-03 20:57:45 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 9s. Last read position: chr2:20,204,206
INFO 2026-06-03 20:57:51 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 5s. Last read position: chr2:21,011,026
INFO 2026-06-03 20:57:59 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 8s. Last read position: chr2:24,275,836
INFO 2026-06-03 20:58:10 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 11s. Last read position: chr2:27,083,314
INFO 2026-06-03 20:58:19 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 9s. Last read position: chr2:28,412,022
INFO 2026-06-03 20:58:29 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 9s. Last read position: chr2:32,916,253
INFO 2026-06-03 20:58:33 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,264
INFO 2026-06-03 20:58:37 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 4s. Last read position: chr2:32,916,406
INFO 2026-06-03 20:58:40 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 2s. Last read position: chr2:34,199,210
INFO 2026-06-03 20:58:48 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 8s. Last read position: chr2:42,329,831
INFO 2026-06-03 20:58:58 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 9s. Last read position: chr2:46,543,023
INFO 2026-06-03 20:59:08 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 9s. Last read position: chr2:54,629,540
INFO 2026-06-03 20:59:24 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 15s. Last read position: chr2:60,901,004
INFO 2026-06-03 20:59:38 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 14s. Last read position: chr2:69,642,901
INFO 2026-06-03 21:00:00 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 22s. Last read position: chr2:73,847,677
INFO 2026-06-03 21:00:11 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 10s. Last read position: chr2:74,493,013
INFO 2026-06-03 21:00:15 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 4s. Last read position: chr2:79,157,288
INFO 2026-06-03 21:00:22 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 6s. Last read position: chr2:86,144,317
INFO 2026-06-03 21:00:27 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 5s. Last read position: chr2:96,186,793
INFO 2026-06-03 21:00:36 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 8s. Last read position: chr2:98,520,137
INFO 2026-06-03 21:00:45 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 8s. Last read position: chr2:108,489,936
INFO 2026-06-03 21:00:49 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 4s. Last read position: chr2:110,534,866
INFO 2026-06-03 21:00:57 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 8s. Last read position: chr2:113,955,623
INFO 2026-06-03 21:01:08 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 10s. Last read position: chr2:127,612,297
INFO 2026-06-03 21:01:25 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 16s. Last read position: chr2:131,120,947
INFO 2026-06-03 21:01:30 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 5s. Last read position: chr2:144,400,014
INFO 2026-06-03 21:01:41 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 10s. Last read position: chr2:162,011,800
INFO 2026-06-03 21:01:55 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 14s. Last read position: chr2:173,956,187
INFO 2026-06-03 21:02:30 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 34s. Last read position: chr2:182,775,323
INFO 2026-06-03 21:02:38 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 7s. Last read position: chr2:190,656,121
INFO 2026-06-03 21:02:56 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 18s. Last read position: chr2:200,931,378
INFO 2026-06-03 21:03:16 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 20s. Last read position: chr2:207,711,959
INFO 2026-06-03 21:03:39 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 22s. Last read position: chr2:215,406,261
INFO 2026-06-03 21:04:08 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 29s. Last read position: chr2:218,402,143
INFO 2026-06-03 21:04:16 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 7s. Last read position: chr2:219,220,839
INFO 2026-06-03 21:04:26 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 10s. Last read position: chr2:226,795,519
INFO 2026-06-03 21:04:44 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 18s. Last read position: chr2:231,461,561
INFO 2026-06-03 21:04:58 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 14s. Last read position: chr2:233,523,229
INFO 2026-06-03 21:05:17 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 18s. Last read position: chr2:238,096,788
INFO 2026-06-03 21:05:30 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 13s. Last read position: chr2:241,203,357
INFO 2026-06-03 21:05:52 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 22s. Last read position: chr3:4,983,100
INFO 2026-06-03 21:06:08 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 15s. Last read position: chr3:10,286,728
INFO 2026-06-03 21:06:18 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 10s. Last read position: chr3:15,096,007
INFO 2026-06-03 21:06:33 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 15s. Last read position: chr3:31,619,675
INFO 2026-06-03 21:06:46 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 12s. Last read position: chr3:38,126,171
INFO 2026-06-03 21:07:14 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 27s. Last read position: chr3:42,125,526
INFO 2026-06-03 21:07:25 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 11s. Last read position: chr3:46,579,959
INFO 2026-06-03 21:07:40 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 14s. Last read position: chr3:47,638,724
INFO 2026-06-03 21:07:59 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 19s. Last read position: chr3:48,590,505
INFO 2026-06-03 21:08:12 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 12s. Last read position: chr3:49,057,842
INFO 2026-06-03 21:08:29 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 16s. Last read position: chr3:49,685,261
INFO 2026-06-03 21:08:44 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 14s. Last read position: chr3:50,269,326
INFO 2026-06-03 21:08:55 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:22:53s. Time for last 1,000,000: 11s. Last read position: chr3:52,054,249
INFO 2026-06-03 21:09:07 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:23:05s. Time for last 1,000,000: 12s. Last read position: chr3:52,522,915
INFO 2026-06-03 21:09:21 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:23:19s. Time for last 1,000,000: 14s. Last read position: chr3:58,123,132
INFO 2026-06-03 21:09:40 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:23:38s. Time for last 1,000,000: 19s. Last read position: chr3:69,101,848
INFO 2026-06-03 21:09:54 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:23:52s. Time for last 1,000,000: 13s. Last read position: chr3:101,849,761
INFO 2026-06-03 21:10:02 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:23:59s. Time for last 1,000,000: 7s. Last read position: chr3:121,635,770
INFO 2026-06-03 21:10:11 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:24:09s. Time for last 1,000,000: 9s. Last read position: chr3:125,013,588
INFO 2026-06-03 21:10:19 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:24:17s. Time for last 1,000,000: 7s. Last read position: chr3:129,250,685
INFO 2026-06-03 21:10:31 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:24:28s. Time for last 1,000,000: 11s. Last read position: chr3:138,162,363
INFO 2026-06-03 21:10:45 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:24:43s. Time for last 1,000,000: 14s. Last read position: chr3:139,561,230
INFO 2026-06-03 21:10:54 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:24:52s. Time for last 1,000,000: 8s. Last read position: chr3:154,276,220
INFO 2026-06-03 21:11:05 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:25:03s. Time for last 1,000,000: 10s. Last read position: chr3:168,032,542
INFO 2026-06-03 21:11:18 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:25:15s. Time for last 1,000,000: 12s. Last read position: chr3:183,984,700
INFO 2026-06-03 21:11:43 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:25:41s. Time for last 1,000,000: 25s. Last read position: chr3:185,534,928
INFO 2026-06-03 21:11:54 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:25:52s. Time for last 1,000,000: 11s. Last read position: chr3:195,336,932
INFO 2026-06-03 21:12:08 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:26:05s. Time for last 1,000,000: 13s. Last read position: chr3:197,017,202
INFO 2026-06-03 21:12:29 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:26:26s. Time for last 1,000,000: 21s. Last read position: chr4:990,212
INFO 2026-06-03 21:12:38 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:26:36s. Time for last 1,000,000: 9s. Last read position: chr4:1,739,739
INFO 2026-06-03 21:12:51 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:26:49s. Time for last 1,000,000: 13s. Last read position: chr4:2,832,356
INFO 2026-06-03 21:13:08 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:27:06s. Time for last 1,000,000: 17s. Last read position: chr4:6,861,586
INFO 2026-06-03 21:13:18 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:27:15s. Time for last 1,000,000: 9s. Last read position: chr4:16,210,113
INFO 2026-06-03 21:13:26 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:27:24s. Time for last 1,000,000: 8s. Last read position: chr4:37,631,405
INFO 2026-06-03 21:13:37 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:27:34s. Time for last 1,000,000: 10s. Last read position: chr4:48,897,808
INFO 2026-06-03 21:13:44 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:27:41s. Time for last 1,000,000: 7s. Last read position: chr4:67,495,160
INFO 2026-06-03 21:13:54 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:27:51s. Time for last 1,000,000: 9s. Last read position: chr4:76,309,759
INFO 2026-06-03 21:14:08 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:28:05s. Time for last 1,000,000: 13s. Last read position: chr4:86,159,434
INFO 2026-06-03 21:14:19 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:28:16s. Time for last 1,000,000: 10s. Last read position: chr4:99,621,121
INFO 2026-06-03 21:14:35 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:28:33s. Time for last 1,000,000: 16s. Last read position: chr4:119,031,770
INFO 2026-06-03 21:14:46 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:28:44s. Time for last 1,000,000: 10s. Last read position: chr4:142,305,458
INFO 2026-06-03 21:15:08 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:29:05s. Time for last 1,000,000: 21s. Last read position: chr4:155,953,750
INFO 2026-06-03 21:15:17 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:29:14s. Time for last 1,000,000: 8s. Last read position: chr4:186,596,976
INFO 2026-06-03 21:15:26 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:29:23s. Time for last 1,000,000: 9s. Last read position: chr5:524,179
INFO 2026-06-03 21:15:32 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:29:30s. Time for last 1,000,000: 6s. Last read position: chr5:10,261,608
INFO 2026-06-03 21:15:57 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:29:55s. Time for last 1,000,000: 25s. Last read position: chr5:14,581,921
INFO 2026-06-03 21:16:08 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:30:05s. Time for last 1,000,000: 10s. Last read position: chr5:40,681,698
INFO 2026-06-03 21:16:17 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:30:15s. Time for last 1,000,000: 9s. Last read position: chr5:65,664,248
INFO 2026-06-03 21:16:27 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:30:25s. Time for last 1,000,000: 9s. Last read position: chr5:75,029,119
INFO 2026-06-03 21:16:38 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:30:35s. Time for last 1,000,000: 10s. Last read position: chr5:95,464,584
INFO 2026-06-03 21:16:57 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:30:55s. Time for last 1,000,000: 19s. Last read position: chr5:119,071,605
INFO 2026-06-03 21:17:12 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:31:09s. Time for last 1,000,000: 14s. Last read position: chr5:132,608,493
INFO 2026-06-03 21:17:19 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:31:16s. Time for last 1,000,000: 7s. Last read position: chr5:136,029,002
INFO 2026-06-03 21:17:33 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:31:31s. Time for last 1,000,000: 14s. Last read position: chr5:139,387,706
INFO 2026-06-03 21:17:42 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:31:40s. Time for last 1,000,000: 8s. Last read position: chr5:141,375,094
INFO 2026-06-03 21:17:49 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:31:47s. Time for last 1,000,000: 7s. Last read position: chr5:143,300,487
INFO 2026-06-03 21:18:01 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:31:59s. Time for last 1,000,000: 11s. Last read position: chr5:150,132,816
INFO 2026-06-03 21:18:11 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:32:08s. Time for last 1,000,000: 9s. Last read position: chr5:150,405,106
INFO 2026-06-03 21:18:22 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:32:20s. Time for last 1,000,000: 11s. Last read position: chr5:150,649,505
INFO 2026-06-03 21:18:36 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:32:33s. Time for last 1,000,000: 13s. Last read position: chr5:157,049,273
INFO 2026-06-03 21:18:49 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:32:47s. Time for last 1,000,000: 13s. Last read position: chr5:171,392,744
INFO 2026-06-03 21:18:59 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:32:57s. Time for last 1,000,000: 10s. Last read position: chr5:176,575,164
INFO 2026-06-03 21:19:10 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:33:08s. Time for last 1,000,000: 11s. Last read position: chr5:177,304,831
INFO 2026-06-03 21:19:23 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:33:20s. Time for last 1,000,000: 12s. Last read position: chr5:179,616,140
INFO 2026-06-03 21:19:57 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:33:55s. Time for last 1,000,000: 34s. Last read position: chr5:179,822,967
INFO 2026-06-03 21:20:08 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:34:06s. Time for last 1,000,000: 11s. Last read position: chr5:180,992,762
INFO 2026-06-03 21:20:23 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:34:21s. Time for last 1,000,000: 14s. Last read position: chr6:2,959,220
INFO 2026-06-03 21:20:40 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:34:37s. Time for last 1,000,000: 16s. Last read position: chr6:7,248,740
INFO 2026-06-03 21:20:53 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:34:51s. Time for last 1,000,000: 13s. Last read position: chr6:16,306,583
INFO 2026-06-03 21:21:07 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:35:04s. Time for last 1,000,000: 13s. Last read position: chr6:26,056,304
INFO 2026-06-03 21:21:13 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:35:10s. Time for last 1,000,000: 6s. Last read position: chr6:27,147,151
INFO 2026-06-03 21:21:18 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:35:16s. Time for last 1,000,000: 5s. Last read position: chr6:29,889,433
INFO 2026-06-03 21:21:28 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:35:25s. Time for last 1,000,000: 9s. Last read position: chr6:30,492,564
INFO 2026-06-03 21:21:57 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:35:54s. Time for last 1,000,000: 28s. Last read position: chr6:30,916,923
INFO 2026-06-03 21:22:09 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:36:07s. Time for last 1,000,000: 12s. Last read position: chr6:31,530,800
INFO 2026-06-03 21:22:38 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:36:36s. Time for last 1,000,000: 29s. Last read position: chr6:31,687,856
INFO 2026-06-03 21:22:51 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:36:49s. Time for last 1,000,000: 13s. Last read position: chr6:31,883,866
INFO 2026-06-03 21:23:15 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:37:13s. Time for last 1,000,000: 23s. Last read position: chr6:32,049,419
INFO 2026-06-03 21:23:42 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:37:39s. Time for last 1,000,000: 26s. Last read position: chr6:32,580,755
INFO 2026-06-03 21:23:58 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:37:55s. Time for last 1,000,000: 15s. Last read position: chr6:33,263,488
INFO 2026-06-03 21:24:13 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:38:11s. Time for last 1,000,000: 15s. Last read position: chr6:33,640,498
INFO 2026-06-03 21:24:29 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:38:27s. Time for last 1,000,000: 15s. Last read position: chr6:35,452,636
INFO 2026-06-03 21:24:40 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:38:37s. Time for last 1,000,000: 10s. Last read position: chr6:39,907,003
INFO 2026-06-03 21:24:48 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:38:46s. Time for last 1,000,000: 8s. Last read position: chr6:41,930,164
INFO 2026-06-03 21:25:07 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:39:04s. Time for last 1,000,000: 18s. Last read position: chr6:43,159,881
INFO 2026-06-03 21:25:27 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:39:25s. Time for last 1,000,000: 20s. Last read position: chr6:44,232,019
INFO 2026-06-03 21:25:39 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:39:36s. Time for last 1,000,000: 11s. Last read position: chr6:53,065,692
INFO 2026-06-03 21:26:59 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:40:57s. Time for last 1,000,000: 80s. Last read position: chr6:75,102,009
INFO 2026-06-03 21:27:33 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:41:30s. Time for last 1,000,000: 33s. Last read position: chr6:89,081,025
INFO 2026-06-03 21:27:50 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:41:48s. Time for last 1,000,000: 17s. Last read position: chr6:107,458,979
INFO 2026-06-03 21:28:09 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:42:07s. Time for last 1,000,000: 19s. Last read position: chr6:112,191,828
INFO 2026-06-03 21:28:22 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:42:20s. Time for last 1,000,000: 12s. Last read position: chr6:128,082,451
INFO 2026-06-03 21:29:00 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:42:58s. Time for last 1,000,000: 38s. Last read position: chr6:138,092,054
INFO 2026-06-03 21:29:12 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:43:10s. Time for last 1,000,000: 11s. Last read position: chr6:145,919,376
INFO 2026-06-03 21:29:41 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:43:38s. Time for last 1,000,000: 28s. Last read position: chr6:157,110,487
INFO 2026-06-03 21:29:59 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:43:56s. Time for last 1,000,000: 18s. Last read position: chr6:158,783,606
INFO 2026-06-03 21:30:20 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:44:18s. Time for last 1,000,000: 21s. Last read position: chr6:167,827,157
INFO 2026-06-03 21:30:57 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:44:55s. Time for last 1,000,000: 37s. Last read position: chr7:899,296
INFO 2026-06-03 21:31:13 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:45:11s. Time for last 1,000,000: 16s. Last read position: chr7:2,432,698
INFO 2026-06-03 21:31:27 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:45:25s. Time for last 1,000,000: 13s. Last read position: chr7:5,362,701
INFO 2026-06-03 21:31:45 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:45:43s. Time for last 1,000,000: 17s. Last read position: chr7:5,528,401
INFO 2026-06-03 21:32:01 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:45:58s. Time for last 1,000,000: 15s. Last read position: chr7:6,653,214
INFO 2026-06-03 21:32:28 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:46:26s. Time for last 1,000,000: 27s. Last read position: chr7:26,197,633
INFO 2026-06-03 21:32:43 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:46:41s. Time for last 1,000,000: 14s. Last read position: chr7:39,997,635
INFO 2026-06-03 21:32:51 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:46:49s. Time for last 1,000,000: 8s. Last read position: chr7:44,539,780
INFO 2026-06-03 21:33:10 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:47:08s. Time for last 1,000,000: 18s. Last read position: chr7:47,439,504
INFO 2026-06-03 21:33:30 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:47:28s. Time for last 1,000,000: 20s. Last read position: chr7:65,979,874
INFO 2026-06-03 21:33:44 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:47:41s. Time for last 1,000,000: 13s. Last read position: chr7:73,259,324
INFO 2026-06-03 21:34:03 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:48:01s. Time for last 1,000,000: 19s. Last read position: chr7:74,338,544
INFO 2026-06-03 21:34:15 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:48:12s. Time for last 1,000,000: 11s. Last read position: chr7:75,422,559
INFO 2026-06-03 21:34:28 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:48:25s. Time for last 1,000,000: 13s. Last read position: chr7:76,511,772
INFO 2026-06-03 21:34:42 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:48:40s. Time for last 1,000,000: 14s. Last read position: chr7:91,941,084
INFO 2026-06-03 21:36:49 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:50:46s. Time for last 1,000,000: 126s. Last read position: chr7:92,095,024
INFO 2026-06-03 21:38:03 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:52:01s. Time for last 1,000,000: 74s. Last read position: chr7:92,579,317
INFO 2026-06-03 21:38:13 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:52:11s. Time for last 1,000,000: 9s. Last read position: chr7:98,293,500
INFO 2026-06-03 21:38:35 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:52:33s. Time for last 1,000,000: 22s. Last read position: chr7:99,668,347
INFO 2026-06-03 21:38:46 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:52:44s. Time for last 1,000,000: 10s. Last read position: chr7:100,353,008
INFO 2026-06-03 21:38:55 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:52:53s. Time for last 1,000,000: 9s. Last read position: chr7:100,861,498
INFO 2026-06-03 21:39:00 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:52:58s. Time for last 1,000,000: 4s. Last read position: chr7:100,956,605
INFO 2026-06-03 21:39:03 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:53:01s. Time for last 1,000,000: 3s. Last read position: chr7:100,997,648
INFO 2026-06-03 21:39:06 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:53:04s. Time for last 1,000,000: 2s. Last read position: chr7:101,038,386
INFO 2026-06-03 21:39:12 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:53:09s. Time for last 1,000,000: 5s. Last read position: chr7:101,240,157
INFO 2026-06-03 21:39:21 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:53:18s. Time for last 1,000,000: 9s. Last read position: chr7:102,555,907
INFO 2026-06-03 21:39:24 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:53:21s. Time for last 1,000,000: 2s. Last read position: chr7:102,688,204
INFO 2026-06-03 21:39:44 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:53:41s. Time for last 1,000,000: 20s. Last read position: chr7:112,450,590
INFO 2026-06-03 21:39:54 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:53:51s. Time for last 1,000,000: 10s. Last read position: chr7:127,704,907
INFO 2026-06-03 21:40:03 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:54:01s. Time for last 1,000,000: 9s. Last read position: chr7:129,711,534
INFO 2026-06-03 21:40:10 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:54:08s. Time for last 1,000,000: 7s. Last read position: chr7:138,861,367
INFO 2026-06-03 21:40:20 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:54:17s. Time for last 1,000,000: 9s. Last read position: chr7:142,050,242
INFO 2026-06-03 21:40:32 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:54:30s. Time for last 1,000,000: 12s. Last read position: chr7:143,383,052
INFO 2026-06-03 21:40:36 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:54:34s. Time for last 1,000,000: 4s. Last read position: chr7:149,147,615
INFO 2026-06-03 21:40:42 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:54:39s. Time for last 1,000,000: 5s. Last read position: chr7:150,857,059
INFO 2026-06-03 21:40:51 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:54:48s. Time for last 1,000,000: 9s. Last read position: chr7:151,237,923
INFO 2026-06-03 21:41:11 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:55:09s. Time for last 1,000,000: 20s. Last read position: chr7:158,760,113
INFO 2026-06-03 21:41:18 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:55:15s. Time for last 1,000,000: 6s. Last read position: chr8:11,845,660
INFO 2026-06-03 21:41:33 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:55:31s. Time for last 1,000,000: 15s. Last read position: chr8:22,417,723
INFO 2026-06-03 21:41:44 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:55:41s. Time for last 1,000,000: 10s. Last read position: chr8:25,392,844
INFO 2026-06-03 21:41:53 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:55:51s. Time for last 1,000,000: 9s. Last read position: chr8:32,548,737
INFO 2026-06-03 21:42:03 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:56:00s. Time for last 1,000,000: 9s. Last read position: chr8:38,429,707
INFO 2026-06-03 21:42:19 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:56:17s. Time for last 1,000,000: 16s. Last read position: chr8:47,840,061
INFO 2026-06-03 21:42:33 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:56:30s. Time for last 1,000,000: 13s. Last read position: chr8:67,301,345
INFO 2026-06-03 21:42:40 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:56:38s. Time for last 1,000,000: 7s. Last read position: chr8:90,645,777
INFO 2026-06-03 21:42:49 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:56:46s. Time for last 1,000,000: 8s. Last read position: chr8:100,703,334
INFO 2026-06-03 21:43:12 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:57:10s. Time for last 1,000,000: 23s. Last read position: chr8:119,070,550
INFO 2026-06-03 21:43:21 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:57:18s. Time for last 1,000,000: 8s. Last read position: chr8:133,032,121
INFO 2026-06-03 21:43:38 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:57:35s. Time for last 1,000,000: 17s. Last read position: chr8:143,538,282
INFO 2026-06-03 21:43:52 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:57:50s. Time for last 1,000,000: 14s. Last read position: chr8:143,728,351
INFO 2026-06-03 21:43:59 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:57:57s. Time for last 1,000,000: 7s. Last read position: chr8:143,858,300
INFO 2026-06-03 21:44:00 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:57:57s. Time for last 1,000,000: 0s. Last read position: chr8:143,858,605
INFO 2026-06-03 21:44:01 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:57:59s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,031
INFO 2026-06-03 21:44:02 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:58:00s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,590
INFO 2026-06-03 21:44:03 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:58:01s. Time for last 1,000,000: 0s. Last read position: chr8:143,860,019
INFO 2026-06-03 21:44:04 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:58:01s. Time for last 1,000,000: 0s. Last read position: chr8:143,860,585
INFO 2026-06-03 21:44:05 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:58:02s. Time for last 1,000,000: 0s. Last read position: chr8:143,860,884
INFO 2026-06-03 21:44:06 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:58:03s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,317
INFO 2026-06-03 21:44:06 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:58:04s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,620
INFO 2026-06-03 21:44:07 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:58:05s. Time for last 1,000,000: 0s. Last read position: chr8:143,862,010
INFO 2026-06-03 21:44:08 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:58:05s. Time for last 1,000,000: 0s. Last read position: chr8:143,862,378
INFO 2026-06-03 21:44:09 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:58:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,824
INFO 2026-06-03 21:44:10 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:58:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,161
INFO 2026-06-03 21:44:12 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:58:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,586
INFO 2026-06-03 21:44:13 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:58:10s. Time for last 1,000,000: 0s. Last read position: chr8:143,863,877
INFO 2026-06-03 21:44:13 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:58:11s. Time for last 1,000,000: 0s. Last read position: chr8:143,864,484
INFO 2026-06-03 21:44:14 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:58:12s. Time for last 1,000,000: 0s. Last read position: chr8:143,864,843
INFO 2026-06-03 21:44:15 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:58:13s. Time for last 1,000,000: 0s. Last read position: chr8:143,865,389
INFO 2026-06-03 21:44:16 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:58:13s. Time for last 1,000,000: 0s. Last read position: chr8:143,865,702
INFO 2026-06-03 21:44:16 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:58:14s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,140
INFO 2026-06-03 21:44:17 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:58:15s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,434
INFO 2026-06-03 21:44:19 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:58:16s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,508
INFO 2026-06-03 21:44:25 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:58:23s. Time for last 1,000,000: 6s. Last read position: chr8:143,923,992
INFO 2026-06-03 21:44:48 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:58:46s. Time for last 1,000,000: 22s. Last read position: chr8:143,985,930
INFO 2026-06-03 21:44:59 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:58:57s. Time for last 1,000,000: 11s. Last read position: chr8:144,317,360
INFO 2026-06-03 21:45:10 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:59:07s. Time for last 1,000,000: 10s. Last read position: chr8:144,416,634
INFO 2026-06-03 21:45:17 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:59:14s. Time for last 1,000,000: 7s. Last read position: chr8:145,052,849
INFO 2026-06-03 21:45:33 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:59:30s. Time for last 1,000,000: 15s. Last read position: chr9:14,306,989
INFO 2026-06-03 21:45:42 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:59:39s. Time for last 1,000,000: 9s. Last read position: chr9:33,318,912
INFO 2026-06-03 21:45:54 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:59:51s. Time for last 1,000,000: 11s. Last read position: chr9:35,609,073
INFO 2026-06-03 21:46:01 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:59:58s. Time for last 1,000,000: 6s. Last read position: chr9:40,099,290
INFO 2026-06-03 21:46:12 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 01:00:09s. Time for last 1,000,000: 11s. Last read position: chr9:75,891,235
INFO 2026-06-03 21:46:24 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 01:00:22s. Time for last 1,000,000: 12s. Last read position: chr9:86,077,522
INFO 2026-06-03 21:46:37 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 01:00:34s. Time for last 1,000,000: 12s. Last read position: chr9:93,515,741
INFO 2026-06-03 21:46:43 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 01:00:41s. Time for last 1,000,000: 6s. Last read position: chr9:99,003,520
INFO 2026-06-03 21:46:49 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 01:00:47s. Time for last 1,000,000: 6s. Last read position: chr9:101,430,828
INFO 2026-06-03 21:47:02 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 01:01:00s. Time for last 1,000,000: 12s. Last read position: chr9:113,183,822
INFO 2026-06-03 21:47:13 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 01:01:11s. Time for last 1,000,000: 11s. Last read position: chr9:121,138,614
INFO 2026-06-03 21:47:24 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 01:01:22s. Time for last 1,000,000: 11s. Last read position: chr9:125,915,684
INFO 2026-06-03 21:47:37 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 01:01:35s. Time for last 1,000,000: 12s. Last read position: chr9:128,224,256
INFO 2026-06-03 21:47:57 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 01:01:54s. Time for last 1,000,000: 19s. Last read position: chr9:128,908,762
INFO 2026-06-03 21:48:07 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 01:02:04s. Time for last 1,000,000: 9s. Last read position: chr9:130,883,987
INFO 2026-06-03 21:48:18 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 01:02:15s. Time for last 1,000,000: 10s. Last read position: chr9:133,109,643
INFO 2026-06-03 21:48:26 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 01:02:24s. Time for last 1,000,000: 8s. Last read position: chr9:135,486,228
INFO 2026-06-03 21:48:46 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 01:02:44s. Time for last 1,000,000: 20s. Last read position: chr9:136,668,166
INFO 2026-06-03 21:48:57 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 01:02:54s. Time for last 1,000,000: 10s. Last read position: chr9:137,175,300
INFO 2026-06-03 21:49:03 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 01:03:01s. Time for last 1,000,000: 6s. Last read position: chr9:137,754,243
INFO 2026-06-03 21:49:17 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 01:03:14s. Time for last 1,000,000: 13s. Last read position: chr10:7,779,003
INFO 2026-06-03 21:49:25 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 01:03:22s. Time for last 1,000,000: 8s. Last read position: chr10:20,787,209
INFO 2026-06-03 21:49:39 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 01:03:36s. Time for last 1,000,000: 13s. Last read position: chr10:32,033,919
INFO 2026-06-03 21:49:49 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 01:03:47s. Time for last 1,000,000: 10s. Last read position: chr10:45,826,592
INFO 2026-06-03 21:49:54 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 01:03:51s. Time for last 1,000,000: 4s. Last read position: chr10:47,502,732
INFO 2026-06-03 21:50:01 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 01:03:58s. Time for last 1,000,000: 7s. Last read position: chr10:59,906,148
INFO 2026-06-03 21:50:11 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 01:04:09s. Time for last 1,000,000: 10s. Last read position: chr10:70,404,161
INFO 2026-06-03 21:50:22 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 01:04:20s. Time for last 1,000,000: 11s. Last read position: chr10:73,800,009
INFO 2026-06-03 21:50:37 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 01:04:35s. Time for last 1,000,000: 14s. Last read position: chr10:79,850,503
INFO 2026-06-03 21:50:43 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 01:04:41s. Time for last 1,000,000: 5s. Last read position: chr10:89,306,537
INFO 2026-06-03 21:50:53 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 01:04:50s. Time for last 1,000,000: 9s. Last read position: chr10:95,606,854
INFO 2026-06-03 21:51:04 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 01:05:01s. Time for last 1,000,000: 11s. Last read position: chr10:99,611,044
INFO 2026-06-03 21:51:11 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 01:05:09s. Time for last 1,000,000: 7s. Last read position: chr10:102,133,076
INFO 2026-06-03 21:51:38 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 01:05:36s. Time for last 1,000,000: 26s. Last read position: chr10:104,064,587
INFO 2026-06-03 21:51:51 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 01:05:49s. Time for last 1,000,000: 12s. Last read position: chr10:114,465,751
INFO 2026-06-03 21:52:01 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 01:05:58s. Time for last 1,000,000: 9s. Last read position: chr10:122,087,504
INFO 2026-06-03 21:52:20 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 01:06:17s. Time for last 1,000,000: 19s. Last read position: chr10:122,579,616
INFO 2026-06-03 21:52:32 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 01:06:30s. Time for last 1,000,000: 12s. Last read position: chr10:122,582,823
INFO 2026-06-03 21:53:03 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 01:07:01s. Time for last 1,000,000: 30s. Last read position: chr10:122,593,566
INFO 2026-06-03 21:53:43 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 01:07:41s. Time for last 1,000,000: 39s. Last read position: chr10:122,598,969
INFO 2026-06-03 21:54:12 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 01:08:09s. Time for last 1,000,000: 28s. Last read position: chr10:122,602,011
INFO 2026-06-03 21:54:32 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 01:08:30s. Time for last 1,000,000: 20s. Last read position: chr10:122,605,854
INFO 2026-06-03 21:55:23 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 01:09:20s. Time for last 1,000,000: 50s. Last read position: chr10:122,606,106
INFO 2026-06-03 21:55:26 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 01:09:23s. Time for last 1,000,000: 3s. Last read position: chr10:122,610,037
INFO 2026-06-03 21:55:37 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 01:09:34s. Time for last 1,000,000: 10s. Last read position: chr10:122,613,988
INFO 2026-06-03 21:56:00 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 01:09:57s. Time for last 1,000,000: 22s. Last read position: chr10:122,618,080
INFO 2026-06-03 21:57:30 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 01:11:27s. Time for last 1,000,000: 90s. Last read position: chr10:122,631,074
INFO 2026-06-03 21:59:23 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 01:13:21s. Time for last 1,000,000: 113s. Last read position: chr10:122,643,399
INFO 2026-06-03 21:59:30 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 01:13:28s. Time for last 1,000,000: 6s. Last read position: chr10:133,273,951
INFO 2026-06-03 21:59:35 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:13:33s. Time for last 1,000,000: 4s. Last read position: chr11:289,834
INFO 2026-06-03 21:59:43 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:13:40s. Time for last 1,000,000: 7s. Last read position: chr11:421,141
INFO 2026-06-03 21:59:51 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:13:49s. Time for last 1,000,000: 8s. Last read position: chr11:617,529
INFO 2026-06-03 21:59:57 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:13:55s. Time for last 1,000,000: 6s. Last read position: chr11:620,352
INFO 2026-06-03 22:00:14 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:14:11s. Time for last 1,000,000: 16s. Last read position: chr11:812,593
INFO 2026-06-03 22:00:20 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:14:18s. Time for last 1,000,000: 6s. Last read position: chr11:1,016,025
INFO 2026-06-03 22:00:22 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:14:20s. Time for last 1,000,000: 1s. Last read position: chr11:1,016,764
INFO 2026-06-03 22:00:24 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:14:22s. Time for last 1,000,000: 1s. Last read position: chr11:1,017,403
INFO 2026-06-03 22:00:26 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:14:23s. Time for last 1,000,000: 1s. Last read position: chr11:1,018,407
INFO 2026-06-03 22:00:29 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:14:26s. Time for last 1,000,000: 2s. Last read position: chr11:1,025,330
INFO 2026-06-03 22:00:35 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:14:32s. Time for last 1,000,000: 5s. Last read position: chr11:1,031,669
INFO 2026-06-03 22:00:41 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:14:39s. Time for last 1,000,000: 6s. Last read position: chr11:1,238,920
INFO 2026-06-03 22:00:48 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:14:45s. Time for last 1,000,000: 6s. Last read position: chr11:1,249,323
INFO 2026-06-03 22:00:58 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:14:55s. Time for last 1,000,000: 10s. Last read position: chr11:2,302,875
INFO 2026-06-03 22:01:08 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:15:06s. Time for last 1,000,000: 10s. Last read position: chr11:5,665,061
INFO 2026-06-03 22:01:17 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:15:15s. Time for last 1,000,000: 9s. Last read position: chr11:7,642,409
INFO 2026-06-03 22:01:34 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:15:31s. Time for last 1,000,000: 16s. Last read position: chr11:12,764,286
INFO 2026-06-03 22:01:45 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:15:42s. Time for last 1,000,000: 10s. Last read position: chr11:18,403,756
INFO 2026-06-03 22:01:54 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:15:52s. Time for last 1,000,000: 9s. Last read position: chr11:35,663,739
INFO 2026-06-03 22:02:06 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:16:03s. Time for last 1,000,000: 11s. Last read position: chr11:46,379,840
INFO 2026-06-03 22:02:19 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:16:17s. Time for last 1,000,000: 13s. Last read position: chr11:47,579,133
INFO 2026-06-03 22:02:27 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:16:25s. Time for last 1,000,000: 8s. Last read position: chr11:57,699,973
INFO 2026-06-03 22:02:45 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:16:43s. Time for last 1,000,000: 18s. Last read position: chr11:60,900,894
INFO 2026-06-03 22:03:07 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:17:04s. Time for last 1,000,000: 21s. Last read position: chr11:62,128,179
INFO 2026-06-03 22:03:11 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:17:08s. Time for last 1,000,000: 3s. Last read position: chr11:62,533,655
INFO 2026-06-03 22:03:19 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:17:16s. Time for last 1,000,000: 8s. Last read position: chr11:62,782,183
INFO 2026-06-03 22:03:31 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:17:29s. Time for last 1,000,000: 12s. Last read position: chr11:64,234,839
INFO 2026-06-03 22:03:39 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:17:36s. Time for last 1,000,000: 7s. Last read position: chr11:64,318,351
INFO 2026-06-03 22:03:49 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:17:46s. Time for last 1,000,000: 10s. Last read position: chr11:64,910,926
INFO 2026-06-03 22:03:59 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:17:56s. Time for last 1,000,000: 9s. Last read position: chr11:65,532,728
INFO 2026-06-03 22:04:09 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:18:06s. Time for last 1,000,000: 10s. Last read position: chr11:65,654,626
INFO 2026-06-03 22:04:19 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:18:16s. Time for last 1,000,000: 9s. Last read position: chr11:66,068,270
INFO 2026-06-03 22:04:30 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:18:28s. Time for last 1,000,000: 11s. Last read position: chr11:66,871,709
INFO 2026-06-03 22:04:40 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:18:37s. Time for last 1,000,000: 9s. Last read position: chr11:67,499,796
INFO 2026-06-03 22:04:48 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:18:46s. Time for last 1,000,000: 8s. Last read position: chr11:68,363,883
INFO 2026-06-03 22:04:58 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:18:56s. Time for last 1,000,000: 10s. Last read position: chr11:70,409,847
INFO 2026-06-03 22:05:19 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:19:16s. Time for last 1,000,000: 20s. Last read position: chr11:72,023,065
INFO 2026-06-03 22:05:38 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:19:36s. Time for last 1,000,000: 19s. Last read position: chr11:74,848,178
INFO 2026-06-03 22:05:47 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:19:45s. Time for last 1,000,000: 8s. Last read position: chr11:77,691,142
INFO 2026-06-03 22:05:58 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:19:56s. Time for last 1,000,000: 10s. Last read position: chr11:94,545,437
INFO 2026-06-03 22:06:08 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:20:06s. Time for last 1,000,000: 10s. Last read position: chr11:111,602,490
INFO 2026-06-03 22:06:13 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:20:10s. Time for last 1,000,000: 4s. Last read position: chr11:116,821,562
INFO 2026-06-03 22:06:18 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:20:16s. Time for last 1,000,000: 5s. Last read position: chr11:117,224,090
INFO 2026-06-03 22:06:31 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:20:29s. Time for last 1,000,000: 12s. Last read position: chr11:118,663,384
INFO 2026-06-03 22:06:41 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:20:39s. Time for last 1,000,000: 10s. Last read position: chr11:119,727,787
INFO 2026-06-03 22:06:53 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:20:50s. Time for last 1,000,000: 11s. Last read position: chr11:124,881,266
INFO 2026-06-03 22:07:01 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:20:59s. Time for last 1,000,000: 8s. Last read position: chr11:130,190,546
INFO 2026-06-03 22:07:15 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:21:12s. Time for last 1,000,000: 13s. Last read position: chr12:2,795,076
INFO 2026-06-03 22:07:24 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:21:21s. Time for last 1,000,000: 8s. Last read position: chr12:6,457,695
INFO 2026-06-03 22:07:54 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:21:52s. Time for last 1,000,000: 30s. Last read position: chr12:6,937,359
INFO 2026-06-03 22:08:03 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:22:01s. Time for last 1,000,000: 8s. Last read position: chr12:9,312,894
INFO 2026-06-03 22:08:10 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:22:08s. Time for last 1,000,000: 6s. Last read position: chr12:16,357,633
INFO 2026-06-03 22:08:21 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:22:19s. Time for last 1,000,000: 11s. Last read position: chr12:31,479,648
INFO 2026-06-03 22:08:34 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:22:31s. Time for last 1,000,000: 12s. Last read position: chr12:47,865,147
INFO 2026-06-03 22:08:42 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:22:40s. Time for last 1,000,000: 8s. Last read position: chr12:49,050,351
INFO 2026-06-03 22:08:51 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:22:49s. Time for last 1,000,000: 9s. Last read position: chr12:50,085,414
INFO 2026-06-03 22:09:02 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:23:00s. Time for last 1,000,000: 11s. Last read position: chr12:52,898,714
INFO 2026-06-03 22:09:15 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:23:13s. Time for last 1,000,000: 12s. Last read position: chr12:53,295,585
INFO 2026-06-03 22:09:31 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:23:29s. Time for last 1,000,000: 15s. Last read position: chr12:54,283,948
INFO 2026-06-03 22:09:46 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:23:44s. Time for last 1,000,000: 14s. Last read position: chr12:56,133,433
INFO 2026-06-03 22:10:00 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:23:58s. Time for last 1,000,000: 14s. Last read position: chr12:56,604,660
INFO 2026-06-03 22:10:11 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:24:08s. Time for last 1,000,000: 10s. Last read position: chr12:57,096,673
INFO 2026-06-03 22:10:33 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:24:31s. Time for last 1,000,000: 22s. Last read position: chr12:57,158,584
INFO 2026-06-03 22:10:48 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:24:45s. Time for last 1,000,000: 14s. Last read position: chr12:57,283,891
INFO 2026-06-03 22:11:02 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:25:00s. Time for last 1,000,000: 14s. Last read position: chr12:64,759,280
INFO 2026-06-03 22:11:10 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:25:07s. Time for last 1,000,000: 7s. Last read position: chr12:71,157,674
INFO 2026-06-03 22:11:19 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:25:17s. Time for last 1,000,000: 9s. Last read position: chr12:98,593,978
INFO 2026-06-03 22:11:33 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:25:31s. Time for last 1,000,000: 14s. Last read position: chr12:108,788,123
INFO 2026-06-03 22:11:47 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:25:44s. Time for last 1,000,000: 13s. Last read position: chr12:112,022,244
INFO 2026-06-03 22:12:01 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:25:59s. Time for last 1,000,000: 14s. Last read position: chr12:114,676,367
INFO 2026-06-03 22:12:13 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:26:10s. Time for last 1,000,000: 11s. Last read position: chr12:120,215,298
INFO 2026-06-03 22:12:22 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:26:20s. Time for last 1,000,000: 9s. Last read position: chr12:121,822,963
INFO 2026-06-03 22:12:33 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:26:31s. Time for last 1,000,000: 10s. Last read position: chr12:124,311,849
INFO 2026-06-03 22:12:49 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:26:46s. Time for last 1,000,000: 15s. Last read position: chr12:131,986,520
INFO 2026-06-03 22:12:59 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:26:57s. Time for last 1,000,000: 10s. Last read position: chr12:133,203,581
INFO 2026-06-03 22:13:07 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:27:04s. Time for last 1,000,000: 7s. Last read position: chr13:24,223,750
INFO 2026-06-03 22:13:12 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:27:09s. Time for last 1,000,000: 5s. Last read position: chr13:27,968,810
INFO 2026-06-03 22:13:21 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:27:19s. Time for last 1,000,000: 9s. Last read position: chr13:39,038,675
INFO 2026-06-03 22:13:28 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 01:27:25s. Time for last 1,000,000: 6s. Last read position: chr13:45,340,101
INFO 2026-06-03 22:13:37 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 01:27:34s. Time for last 1,000,000: 9s. Last read position: chr13:51,934,997
INFO 2026-06-03 22:13:46 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 01:27:44s. Time for last 1,000,000: 9s. Last read position: chr13:73,062,539
INFO 2026-06-03 22:14:03 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 01:28:00s. Time for last 1,000,000: 16s. Last read position: chr13:80,337,561
INFO 2026-06-03 22:14:17 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 01:28:15s. Time for last 1,000,000: 14s. Last read position: chr13:99,517,631
INFO 2026-06-03 22:14:24 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 01:28:21s. Time for last 1,000,000: 6s. Last read position: chr13:109,785,704
INFO 2026-06-03 22:14:37 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 01:28:34s. Time for last 1,000,000: 12s. Last read position: chr13:112,690,357
INFO 2026-06-03 22:14:50 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 01:28:47s. Time for last 1,000,000: 13s. Last read position: chr13:113,795,187
INFO 2026-06-03 22:15:02 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 01:28:59s. Time for last 1,000,000: 12s. Last read position: chr14:20,801,698
INFO 2026-06-03 22:15:17 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 01:29:15s. Time for last 1,000,000: 15s. Last read position: chr14:22,845,877
INFO 2026-06-03 22:15:25 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 01:29:23s. Time for last 1,000,000: 8s. Last read position: chr14:23,323,036
INFO 2026-06-03 22:15:39 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 01:29:36s. Time for last 1,000,000: 13s. Last read position: chr14:24,145,432
INFO 2026-06-03 22:15:50 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 01:29:47s. Time for last 1,000,000: 11s. Last read position: chr14:24,415,153
INFO 2026-06-03 22:16:04 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 01:30:01s. Time for last 1,000,000: 13s. Last read position: chr14:38,209,889
INFO 2026-06-03 22:16:11 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 01:30:08s. Time for last 1,000,000: 7s. Last read position: chr14:49,862,670
INFO 2026-06-03 22:16:21 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 01:30:18s. Time for last 1,000,000: 10s. Last read position: chr14:57,208,649
INFO 2026-06-03 22:16:55 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 01:30:53s. Time for last 1,000,000: 34s. Last read position: chr14:64,741,203
INFO 2026-06-03 22:17:08 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 01:31:06s. Time for last 1,000,000: 13s. Last read position: chr14:68,921,060
INFO 2026-06-03 22:17:19 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 01:31:17s. Time for last 1,000,000: 11s. Last read position: chr14:73,569,405
INFO 2026-06-03 22:17:29 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 01:31:27s. Time for last 1,000,000: 10s. Last read position: chr14:75,437,897
INFO 2026-06-03 22:17:38 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 01:31:36s. Time for last 1,000,000: 8s. Last read position: chr14:91,170,023
INFO 2026-06-03 22:17:47 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 01:31:44s. Time for last 1,000,000: 8s. Last read position: chr14:94,116,456
INFO 2026-06-03 22:17:56 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 01:31:54s. Time for last 1,000,000: 9s. Last read position: chr14:101,836,247
INFO 2026-06-03 22:19:42 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 01:33:40s. Time for last 1,000,000: 106s. Last read position: chr14:102,928,456
INFO 2026-06-03 22:19:58 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 01:33:56s. Time for last 1,000,000: 15s. Last read position: chr14:104,654,746
INFO 2026-06-03 22:20:32 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 01:34:29s. Time for last 1,000,000: 33s. Last read position: chr14:104,887,064
INFO 2026-06-03 22:20:41 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 01:34:38s. Time for last 1,000,000: 8s. Last read position: chr14:105,469,909
INFO 2026-06-03 22:20:43 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 01:34:41s. Time for last 1,000,000: 2s. Last read position: chr14:105,707,352
INFO 2026-06-03 22:20:45 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 01:34:42s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,163
INFO 2026-06-03 22:20:46 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 01:34:44s. Time for last 1,000,000: 1s. Last read position: chr14:105,928,733
INFO 2026-06-03 22:21:10 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 01:35:07s. Time for last 1,000,000: 23s. Last read position: chr15:30,045,317
INFO 2026-06-03 22:21:16 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 01:35:14s. Time for last 1,000,000: 6s. Last read position: chr15:34,383,744
INFO 2026-06-03 22:21:22 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 01:35:19s. Time for last 1,000,000: 5s. Last read position: chr15:40,356,135
INFO 2026-06-03 22:21:29 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 01:35:26s. Time for last 1,000,000: 7s. Last read position: chr15:41,736,256
INFO 2026-06-03 22:21:41 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 01:35:39s. Time for last 1,000,000: 12s. Last read position: chr15:43,529,960
INFO 2026-06-03 22:21:48 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 01:35:46s. Time for last 1,000,000: 7s. Last read position: chr15:44,289,136
INFO 2026-06-03 22:22:00 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 01:35:58s. Time for last 1,000,000: 11s. Last read position: chr15:50,286,056
INFO 2026-06-03 22:22:13 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 01:36:11s. Time for last 1,000,000: 13s. Last read position: chr15:59,372,561
INFO 2026-06-03 22:22:33 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 01:36:31s. Time for last 1,000,000: 20s. Last read position: chr15:64,138,068
INFO 2026-06-03 22:22:40 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 01:36:38s. Time for last 1,000,000: 6s. Last read position: chr15:68,351,327
INFO 2026-06-03 22:22:53 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 01:36:50s. Time for last 1,000,000: 12s. Last read position: chr15:73,570,308
INFO 2026-06-03 22:23:05 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 01:37:03s. Time for last 1,000,000: 12s. Last read position: chr15:74,937,928
INFO 2026-06-03 22:23:18 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 01:37:16s. Time for last 1,000,000: 13s. Last read position: chr15:77,056,169
INFO 2026-06-03 22:23:30 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 01:37:27s. Time for last 1,000,000: 11s. Last read position: chr15:84,240,062
INFO 2026-06-03 22:23:38 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 01:37:35s. Time for last 1,000,000: 8s. Last read position: chr15:89,188,254
INFO 2026-06-03 22:23:48 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 01:37:45s. Time for last 1,000,000: 9s. Last read position: chr15:89,799,476
INFO 2026-06-03 22:24:00 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 01:37:58s. Time for last 1,000,000: 12s. Last read position: chr15:89,805,358
INFO 2026-06-03 22:24:12 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 01:38:09s. Time for last 1,000,000: 11s. Last read position: chr15:90,440,543
INFO 2026-06-03 22:24:24 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 01:38:22s. Time for last 1,000,000: 12s. Last read position: chr15:101,046,075
INFO 2026-06-03 22:24:34 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 01:38:32s. Time for last 1,000,000: 10s. Last read position: chr16:376,305
INFO 2026-06-03 22:24:46 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 01:38:43s. Time for last 1,000,000: 11s. Last read position: chr16:670,306
INFO 2026-06-03 22:24:59 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 01:38:57s. Time for last 1,000,000: 13s. Last read position: chr16:1,390,632
INFO 2026-06-03 22:25:09 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 01:39:07s. Time for last 1,000,000: 9s. Last read position: chr16:1,964,356
INFO 2026-06-03 22:25:53 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 01:39:50s. Time for last 1,000,000: 43s. Last read position: chr16:2,116,003
INFO 2026-06-03 22:26:04 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 01:40:01s. Time for last 1,000,000: 10s. Last read position: chr16:2,761,570
INFO 2026-06-03 22:26:18 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 01:40:15s. Time for last 1,000,000: 14s. Last read position: chr16:2,769,221
INFO 2026-06-03 22:26:30 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 01:40:27s. Time for last 1,000,000: 12s. Last read position: chr16:3,563,995
INFO 2026-06-03 22:26:45 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 01:40:42s. Time for last 1,000,000: 14s. Last read position: chr16:4,688,795
INFO 2026-06-03 22:26:56 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 01:40:53s. Time for last 1,000,000: 11s. Last read position: chr16:10,908,071
INFO 2026-06-03 22:27:04 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 01:41:02s. Time for last 1,000,000: 8s. Last read position: chr16:14,911,792
INFO 2026-06-03 22:27:14 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 01:41:12s. Time for last 1,000,000: 9s. Last read position: chr16:15,154,576
INFO 2026-06-03 22:27:30 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 01:41:28s. Time for last 1,000,000: 16s. Last read position: chr16:16,317,916
INFO 2026-06-03 22:27:33 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 01:41:30s. Time for last 1,000,000: 2s. Last read position: chr16:18,347,303
INFO 2026-06-03 22:27:38 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 01:41:36s. Time for last 1,000,000: 5s. Last read position: chr16:18,783,090
INFO 2026-06-03 22:27:48 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 01:41:45s. Time for last 1,000,000: 9s. Last read position: chr16:21,403,396
INFO 2026-06-03 22:27:51 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 01:41:48s. Time for last 1,000,000: 3s. Last read position: chr16:21,835,471
INFO 2026-06-03 22:27:56 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 01:41:53s. Time for last 1,000,000: 5s. Last read position: chr16:22,513,784
INFO 2026-06-03 22:28:00 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 01:41:58s. Time for last 1,000,000: 4s. Last read position: chr16:23,535,054
INFO 2026-06-03 22:28:09 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 01:42:07s. Time for last 1,000,000: 8s. Last read position: chr16:28,176,032
INFO 2026-06-03 22:28:22 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 01:42:19s. Time for last 1,000,000: 12s. Last read position: chr16:28,835,629
INFO 2026-06-03 22:28:29 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 01:42:26s. Time for last 1,000,000: 7s. Last read position: chr16:29,454,172
INFO 2026-06-03 22:28:31 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 01:42:28s. Time for last 1,000,000: 1s. Last read position: chr16:29,694,932
INFO 2026-06-03 22:28:39 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 01:42:36s. Time for last 1,000,000: 8s. Last read position: chr16:29,912,030
INFO 2026-06-03 22:28:50 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 01:42:48s. Time for last 1,000,000: 11s. Last read position: chr16:30,194,207
INFO 2026-06-03 22:28:53 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 01:42:50s. Time for last 1,000,000: 2s. Last read position: chr16:30,395,785
INFO 2026-06-03 22:28:59 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 01:42:57s. Time for last 1,000,000: 6s. Last read position: chr16:30,737,730
INFO 2026-06-03 22:29:06 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 01:43:04s. Time for last 1,000,000: 6s. Last read position: chr16:31,182,612
INFO 2026-06-03 22:29:16 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 01:43:14s. Time for last 1,000,000: 9s. Last read position: chr16:48,348,166
INFO 2026-06-03 22:29:24 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 01:43:22s. Time for last 1,000,000: 8s. Last read position: chr16:56,609,267
INFO 2026-06-03 22:29:40 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 01:43:38s. Time for last 1,000,000: 16s. Last read position: chr16:57,661,794
INFO 2026-06-03 22:29:54 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 01:43:52s. Time for last 1,000,000: 13s. Last read position: chr16:66,938,182
INFO 2026-06-03 22:30:02 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 01:43:59s. Time for last 1,000,000: 7s. Last read position: chr16:67,230,616
INFO 2026-06-03 22:30:14 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 01:44:12s. Time for last 1,000,000: 12s. Last read position: chr16:68,324,797
INFO 2026-06-03 22:30:22 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 01:44:20s. Time for last 1,000,000: 8s. Last read position: chr16:69,757,295
INFO 2026-06-03 22:30:34 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 01:44:32s. Time for last 1,000,000: 12s. Last read position: chr16:71,626,429
INFO 2026-06-03 22:30:44 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 01:44:42s. Time for last 1,000,000: 9s. Last read position: chr16:75,235,377
INFO 2026-06-03 22:30:50 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 01:44:47s. Time for last 1,000,000: 5s. Last read position: chr16:81,678,546
INFO 2026-06-03 22:30:59 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 01:44:57s. Time for last 1,000,000: 9s. Last read position: chr16:85,665,991
INFO 2026-06-03 22:31:05 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 01:45:03s. Time for last 1,000,000: 5s. Last read position: chr16:88,643,392
INFO 2026-06-03 22:31:13 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 01:45:11s. Time for last 1,000,000: 8s. Last read position: chr16:89,279,793
INFO 2026-06-03 22:31:38 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 01:45:36s. Time for last 1,000,000: 24s. Last read position: chr16:89,638,106
INFO 2026-06-03 22:31:56 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 01:45:53s. Time for last 1,000,000: 17s. Last read position: chr17:746,104
INFO 2026-06-03 22:32:09 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 01:46:07s. Time for last 1,000,000: 13s. Last read position: chr17:1,677,039
INFO 2026-06-03 22:32:20 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 01:46:18s. Time for last 1,000,000: 11s. Last read position: chr17:3,621,252
INFO 2026-06-03 22:32:30 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 01:46:28s. Time for last 1,000,000: 9s. Last read position: chr17:4,673,093
INFO 2026-06-03 22:32:41 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 01:46:39s. Time for last 1,000,000: 11s. Last read position: chr17:5,022,571
INFO 2026-06-03 22:32:56 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 01:46:54s. Time for last 1,000,000: 14s. Last read position: chr17:7,224,848
INFO 2026-06-03 22:33:05 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 01:47:03s. Time for last 1,000,000: 8s. Last read position: chr17:7,513,778
INFO 2026-06-03 22:33:17 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 01:47:14s. Time for last 1,000,000: 11s. Last read position: chr17:8,176,205
INFO 2026-06-03 22:33:32 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 01:47:29s. Time for last 1,000,000: 15s. Last read position: chr17:16,325,891
INFO 2026-06-03 22:33:42 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 01:47:40s. Time for last 1,000,000: 10s. Last read position: chr17:17,819,539
INFO 2026-06-03 22:33:55 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 01:47:53s. Time for last 1,000,000: 12s. Last read position: chr17:21,018,017
INFO 2026-06-03 22:34:04 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 01:48:01s. Time for last 1,000,000: 8s. Last read position: chr17:28,611,182
INFO 2026-06-03 22:34:20 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 01:48:17s. Time for last 1,000,000: 16s. Last read position: chr17:29,293,874
INFO 2026-06-03 22:34:32 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 01:48:29s. Time for last 1,000,000: 12s. Last read position: chr17:32,940,817
INFO 2026-06-03 22:34:40 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 01:48:37s. Time for last 1,000,000: 7s. Last read position: chr17:36,592,027
INFO 2026-06-03 22:34:48 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 01:48:45s. Time for last 1,000,000: 8s. Last read position: chr17:38,352,248
INFO 2026-06-03 22:34:54 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 01:48:52s. Time for last 1,000,000: 6s. Last read position: chr17:39,653,657
INFO 2026-06-03 22:35:15 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 01:49:13s. Time for last 1,000,000: 20s. Last read position: chr17:39,723,549
INFO 2026-06-03 22:35:38 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 01:49:36s. Time for last 1,000,000: 22s. Last read position: chr17:40,178,090
INFO 2026-06-03 22:35:44 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 01:49:42s. Time for last 1,000,000: 6s. Last read position: chr17:41,767,465
INFO 2026-06-03 22:36:00 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 01:49:58s. Time for last 1,000,000: 16s. Last read position: chr17:42,582,731
INFO 2026-06-03 22:36:10 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 01:50:07s. Time for last 1,000,000: 9s. Last read position: chr17:44,093,387
INFO 2026-06-03 22:36:21 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 01:50:19s. Time for last 1,000,000: 11s. Last read position: chr17:45,150,145
INFO 2026-06-03 22:36:34 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 01:50:32s. Time for last 1,000,000: 12s. Last read position: chr17:47,605,387
INFO 2026-06-03 22:36:46 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 01:50:43s. Time for last 1,000,000: 11s. Last read position: chr17:48,933,318
INFO 2026-06-03 22:36:53 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 01:50:51s. Time for last 1,000,000: 7s. Last read position: chr17:50,189,378
INFO 2026-06-03 22:37:03 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 01:51:00s. Time for last 1,000,000: 9s. Last read position: chr17:50,195,642
INFO 2026-06-03 22:37:15 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 01:51:13s. Time for last 1,000,000: 12s. Last read position: chr17:50,669,187
INFO 2026-06-03 22:37:27 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 01:51:25s. Time for last 1,000,000: 12s. Last read position: chr17:57,627,228
INFO 2026-06-03 22:37:37 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 01:51:34s. Time for last 1,000,000: 9s. Last read position: chr17:59,682,375
INFO 2026-06-03 22:37:55 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 01:51:53s. Time for last 1,000,000: 18s. Last read position: chr17:63,497,313
INFO 2026-06-03 22:38:13 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 01:52:10s. Time for last 1,000,000: 17s. Last read position: chr17:65,537,786
INFO 2026-06-03 22:38:25 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 01:52:23s. Time for last 1,000,000: 12s. Last read position: chr17:73,232,116
INFO 2026-06-03 22:38:32 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 01:52:29s. Time for last 1,000,000: 6s. Last read position: chr17:75,242,356
INFO 2026-06-03 22:38:56 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 01:52:53s. Time for last 1,000,000: 24s. Last read position: chr17:75,614,259
INFO 2026-06-03 22:39:42 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 01:53:40s. Time for last 1,000,000: 46s. Last read position: chr17:75,740,796
INFO 2026-06-03 22:39:56 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 01:53:54s. Time for last 1,000,000: 14s. Last read position: chr17:76,009,190
INFO 2026-06-03 22:40:07 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 01:54:04s. Time for last 1,000,000: 10s. Last read position: chr17:77,402,495
INFO 2026-06-03 22:40:18 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 01:54:16s. Time for last 1,000,000: 11s. Last read position: chr17:78,972,968
INFO 2026-06-03 22:40:28 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 01:54:25s. Time for last 1,000,000: 9s. Last read position: chr17:80,334,205
INFO 2026-06-03 22:40:47 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 01:54:45s. Time for last 1,000,000: 19s. Last read position: chr17:81,192,317
INFO 2026-06-03 22:41:07 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 01:55:04s. Time for last 1,000,000: 19s. Last read position: chr17:81,701,510
INFO 2026-06-03 22:41:44 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 01:55:42s. Time for last 1,000,000: 37s. Last read position: chr17:81,922,907
INFO 2026-06-03 22:41:57 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 01:55:54s. Time for last 1,000,000: 12s. Last read position: chr17:82,201,709
INFO 2026-06-03 22:42:09 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 01:56:07s. Time for last 1,000,000: 12s. Last read position: chr18:3,173,953
INFO 2026-06-03 22:42:21 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 01:56:19s. Time for last 1,000,000: 11s. Last read position: chr18:21,042,205
INFO 2026-06-03 22:42:32 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 01:56:30s. Time for last 1,000,000: 10s. Last read position: chr18:32,204,265
INFO 2026-06-03 22:42:42 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 01:56:40s. Time for last 1,000,000: 9s. Last read position: chr18:49,826,577
INFO 2026-06-03 22:42:59 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 01:56:56s. Time for last 1,000,000: 16s. Last read position: chr18:58,385,549
INFO 2026-06-03 22:43:10 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 01:57:07s. Time for last 1,000,000: 11s. Last read position: chr18:75,063,740
INFO 2026-06-03 22:43:17 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 01:57:15s. Time for last 1,000,000: 7s. Last read position: chr19:581,572
INFO 2026-06-03 22:43:25 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 01:57:23s. Time for last 1,000,000: 7s. Last read position: chr19:871,216
INFO 2026-06-03 22:43:37 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 01:57:34s. Time for last 1,000,000: 11s. Last read position: chr19:1,221,295
INFO 2026-06-03 22:43:47 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 01:57:45s. Time for last 1,000,000: 10s. Last read position: chr19:1,496,315
INFO 2026-06-03 22:43:55 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 01:57:52s. Time for last 1,000,000: 7s. Last read position: chr19:2,117,222
INFO 2026-06-03 22:44:03 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 01:58:01s. Time for last 1,000,000: 8s. Last read position: chr19:2,759,259
INFO 2026-06-03 22:44:10 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 01:58:08s. Time for last 1,000,000: 7s. Last read position: chr19:3,738,595
INFO 2026-06-03 22:44:16 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 01:58:14s. Time for last 1,000,000: 5s. Last read position: chr19:4,409,465
INFO 2026-06-03 22:44:25 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 01:58:23s. Time for last 1,000,000: 8s. Last read position: chr19:5,667,144
INFO 2026-06-03 22:44:32 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 01:58:29s. Time for last 1,000,000: 6s. Last read position: chr19:6,417,065
INFO 2026-06-03 22:44:44 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 01:58:41s. Time for last 1,000,000: 12s. Last read position: chr19:7,605,272
INFO 2026-06-03 22:44:51 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 01:58:49s. Time for last 1,000,000: 7s. Last read position: chr19:8,390,398
INFO 2026-06-03 22:45:06 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 01:59:04s. Time for last 1,000,000: 15s. Last read position: chr19:10,317,576
INFO 2026-06-03 22:45:19 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 01:59:16s. Time for last 1,000,000: 12s. Last read position: chr19:10,830,244
INFO 2026-06-03 22:45:51 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 01:59:49s. Time for last 1,000,000: 32s. Last read position: chr19:11,447,481
INFO 2026-06-03 22:46:03 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 02:00:01s. Time for last 1,000,000: 11s. Last read position: chr19:12,896,328
INFO 2026-06-03 22:46:14 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 02:00:12s. Time for last 1,000,000: 11s. Last read position: chr19:13,993,679
INFO 2026-06-03 22:46:24 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 02:00:21s. Time for last 1,000,000: 9s. Last read position: chr19:15,177,935
INFO 2026-06-03 22:46:36 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 02:00:33s. Time for last 1,000,000: 12s. Last read position: chr19:15,696,954
INFO 2026-06-03 22:46:47 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 02:00:45s. Time for last 1,000,000: 11s. Last read position: chr19:17,245,029
INFO 2026-06-03 22:46:55 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 02:00:53s. Time for last 1,000,000: 7s. Last read position: chr19:18,150,474
INFO 2026-06-03 22:47:02 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 02:01:00s. Time for last 1,000,000: 6s. Last read position: chr19:18,903,340
INFO 2026-06-03 22:47:10 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 02:01:08s. Time for last 1,000,000: 8s. Last read position: chr19:21,142,031
INFO 2026-06-03 22:47:18 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 02:01:16s. Time for last 1,000,000: 7s. Last read position: chr19:34,677,734
INFO 2026-06-03 22:47:28 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 02:01:26s. Time for last 1,000,000: 9s. Last read position: chr19:35,733,005
INFO 2026-06-03 22:47:38 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 02:01:36s. Time for last 1,000,000: 10s. Last read position: chr19:38,287,922
INFO 2026-06-03 22:47:47 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 02:01:45s. Time for last 1,000,000: 8s. Last read position: chr19:38,808,912
INFO 2026-06-03 22:47:59 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 02:01:56s. Time for last 1,000,000: 11s. Last read position: chr19:39,825,791
INFO 2026-06-03 22:48:03 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 02:02:00s. Time for last 1,000,000: 3s. Last read position: chr19:39,891,871
INFO 2026-06-03 22:48:09 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 02:02:06s. Time for last 1,000,000: 5s. Last read position: chr19:39,943,458
INFO 2026-06-03 22:48:36 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 02:02:33s. Time for last 1,000,000: 27s. Last read position: chr19:40,627,246
INFO 2026-06-03 22:48:54 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 02:02:52s. Time for last 1,000,000: 18s. Last read position: chr19:41,715,102
INFO 2026-06-03 22:49:14 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 02:03:11s. Time for last 1,000,000: 19s. Last read position: chr19:42,272,152
INFO 2026-06-03 22:49:28 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 02:03:26s. Time for last 1,000,000: 14s. Last read position: chr19:42,522,092
INFO 2026-06-03 22:49:36 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 02:03:34s. Time for last 1,000,000: 8s. Last read position: chr19:44,977,359
INFO 2026-06-03 22:49:49 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 02:03:46s. Time for last 1,000,000: 12s. Last read position: chr19:45,778,138
INFO 2026-06-03 22:50:02 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 02:03:59s. Time for last 1,000,000: 12s. Last read position: chr19:47,069,165
INFO 2026-06-03 22:50:14 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 02:04:12s. Time for last 1,000,000: 12s. Last read position: chr19:48,473,305
INFO 2026-06-03 22:50:25 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 02:04:22s. Time for last 1,000,000: 10s. Last read position: chr19:48,919,087
INFO 2026-06-03 22:50:42 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 02:04:40s. Time for last 1,000,000: 17s. Last read position: chr19:49,466,161
INFO 2026-06-03 22:50:54 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 02:04:52s. Time for last 1,000,000: 12s. Last read position: chr19:49,621,540
INFO 2026-06-03 22:51:11 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 02:05:09s. Time for last 1,000,000: 17s. Last read position: chr19:49,908,972
INFO 2026-06-03 22:51:45 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 02:05:43s. Time for last 1,000,000: 33s. Last read position: chr19:50,289,537
INFO 2026-06-03 22:52:11 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 02:06:09s. Time for last 1,000,000: 26s. Last read position: chr19:52,406,005
INFO 2026-06-03 22:52:23 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 02:06:20s. Time for last 1,000,000: 11s. Last read position: chr19:54,452,669
INFO 2026-06-03 22:52:35 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 02:06:33s. Time for last 1,000,000: 12s. Last read position: chr19:55,203,847
INFO 2026-06-03 22:52:43 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 02:06:40s. Time for last 1,000,000: 7s. Last read position: chr19:55,663,677
INFO 2026-06-03 22:52:50 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 02:06:48s. Time for last 1,000,000: 7s. Last read position: chr19:58,068,272
INFO 2026-06-03 22:53:04 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 02:07:02s. Time for last 1,000,000: 14s. Last read position: chr20:1,135,263
INFO 2026-06-03 22:53:14 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 02:07:11s. Time for last 1,000,000: 9s. Last read position: chr20:3,576,890
INFO 2026-06-03 22:53:23 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 02:07:21s. Time for last 1,000,000: 9s. Last read position: chr20:10,672,822
INFO 2026-06-03 22:53:44 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 02:07:42s. Time for last 1,000,000: 20s. Last read position: chr20:19,960,657
INFO 2026-06-03 22:53:56 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 02:07:54s. Time for last 1,000,000: 11s. Last read position: chr20:25,458,491
INFO 2026-06-03 22:54:10 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 02:08:08s. Time for last 1,000,000: 14s. Last read position: chr20:34,280,938
INFO 2026-06-03 22:54:26 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 02:08:24s. Time for last 1,000,000: 16s. Last read position: chr20:35,632,344
INFO 2026-06-03 22:54:46 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 02:08:44s. Time for last 1,000,000: 19s. Last read position: chr20:38,033,947
INFO 2026-06-03 22:55:00 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 02:08:58s. Time for last 1,000,000: 14s. Last read position: chr20:44,160,055
INFO 2026-06-03 22:55:18 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 02:09:16s. Time for last 1,000,000: 18s. Last read position: chr20:45,834,211
INFO 2026-06-03 22:55:43 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 02:09:40s. Time for last 1,000,000: 24s. Last read position: chr20:49,247,876
INFO 2026-06-03 22:55:50 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 02:09:48s. Time for last 1,000,000: 7s. Last read position: chr20:57,407,549
INFO 2026-06-03 22:56:12 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 02:10:10s. Time for last 1,000,000: 22s. Last read position: chr20:62,133,356
INFO 2026-06-03 22:56:23 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 02:10:21s. Time for last 1,000,000: 11s. Last read position: chr20:62,813,516
INFO 2026-06-03 22:56:32 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 02:10:29s. Time for last 1,000,000: 8s. Last read position: chr20:63,691,745
INFO 2026-06-03 22:56:39 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 02:10:37s. Time for last 1,000,000: 7s. Last read position: chr21:5,163,565
INFO 2026-06-03 22:56:40 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 02:10:38s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,707
INFO 2026-06-03 22:56:41 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 02:10:39s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,366
INFO 2026-06-03 22:56:42 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 02:10:40s. Time for last 1,000,000: 0s. Last read position: chr21:8,444,601
INFO 2026-06-03 22:56:49 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 02:10:47s. Time for last 1,000,000: 6s. Last read position: chr21:26,112,007
INFO 2026-06-03 22:56:59 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 02:10:56s. Time for last 1,000,000: 9s. Last read position: chr21:33,755,341
INFO 2026-06-03 22:57:15 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 02:11:13s. Time for last 1,000,000: 16s. Last read position: chr21:39,264,735
INFO 2026-06-03 22:57:37 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 02:11:34s. Time for last 1,000,000: 21s. Last read position: chr21:42,818,462
INFO 2026-06-03 22:57:45 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 02:11:42s. Time for last 1,000,000: 8s. Last read position: chr21:44,573,827
INFO 2026-06-03 22:57:57 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 02:11:55s. Time for last 1,000,000: 12s. Last read position: chr21:46,002,651
INFO 2026-06-03 22:58:10 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 02:12:08s. Time for last 1,000,000: 12s. Last read position: chr22:17,812,544
INFO 2026-06-03 22:58:20 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 02:12:17s. Time for last 1,000,000: 9s. Last read position: chr22:20,116,514
INFO 2026-06-03 22:58:37 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 02:12:34s. Time for last 1,000,000: 17s. Last read position: chr22:21,957,294
INFO 2026-06-03 22:58:43 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 02:12:41s. Time for last 1,000,000: 6s. Last read position: chr22:23,882,569
INFO 2026-06-03 22:58:53 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 02:12:51s. Time for last 1,000,000: 10s. Last read position: chr22:25,170,827
INFO 2026-06-03 22:59:05 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 02:13:03s. Time for last 1,000,000: 11s. Last read position: chr22:29,296,348
INFO 2026-06-03 22:59:21 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 02:13:19s. Time for last 1,000,000: 16s. Last read position: chr22:30,369,498
INFO 2026-06-03 22:59:35 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 02:13:33s. Time for last 1,000,000: 14s. Last read position: chr22:31,804,175
INFO 2026-06-03 22:59:50 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 02:13:48s. Time for last 1,000,000: 14s. Last read position: chr22:36,141,215
INFO 2026-06-03 22:59:57 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 02:13:54s. Time for last 1,000,000: 6s. Last read position: chr22:36,517,346
INFO 2026-06-03 23:00:04 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 02:14:01s. Time for last 1,000,000: 6s. Last read position: chr22:37,650,652
INFO 2026-06-03 23:00:13 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 02:14:11s. Time for last 1,000,000: 9s. Last read position: chr22:38,300,914
INFO 2026-06-03 23:00:20 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 02:14:18s. Time for last 1,000,000: 6s. Last read position: chr22:39,522,423
INFO 2026-06-03 23:00:29 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 02:14:27s. Time for last 1,000,000: 8s. Last read position: chr22:41,437,086
INFO 2026-06-03 23:00:43 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 02:14:41s. Time for last 1,000,000: 13s. Last read position: chr22:42,592,001
INFO 2026-06-03 23:00:51 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 02:14:48s. Time for last 1,000,000: 7s. Last read position: chr22:46,356,046
INFO 2026-06-03 23:00:58 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 02:14:56s. Time for last 1,000,000: 7s. Last read position: chr22:50,240,250
INFO 2026-06-03 23:01:14 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 02:15:11s. Time for last 1,000,000: 15s. Last read position: chr22:50,459,581
INFO 2026-06-03 23:01:25 SinglePassSamProgram Processed 637,000,000 records. Elapsed time: 02:15:22s. Time for last 1,000,000: 11s. Last read position: chr22:50,627,351
INFO 2026-06-03 23:01:29 SinglePassSamProgram Processed 638,000,000 records. Elapsed time: 02:15:27s. Time for last 1,000,000: 4s. Last read position: chrX:11,760,474
INFO 2026-06-03 23:01:38 SinglePassSamProgram Processed 639,000,000 records. Elapsed time: 02:15:35s. Time for last 1,000,000: 8s. Last read position: chrX:24,788,479
INFO 2026-06-03 23:02:03 SinglePassSamProgram Processed 640,000,000 records. Elapsed time: 02:16:00s. Time for last 1,000,000: 24s. Last read position: chrX:43,744,925
INFO 2026-06-03 23:02:12 SinglePassSamProgram Processed 641,000,000 records. Elapsed time: 02:16:09s. Time for last 1,000,000: 9s. Last read position: chrX:48,686,090
INFO 2026-06-03 23:02:25 SinglePassSamProgram Processed 642,000,000 records. Elapsed time: 02:16:22s. Time for last 1,000,000: 12s. Last read position: chrX:51,901,765
INFO 2026-06-03 23:02:42 SinglePassSamProgram Processed 643,000,000 records. Elapsed time: 02:16:40s. Time for last 1,000,000: 17s. Last read position: chrX:54,811,290
INFO 2026-06-03 23:02:53 SinglePassSamProgram Processed 644,000,000 records. Elapsed time: 02:16:51s. Time for last 1,000,000: 11s. Last read position: chrX:71,297,400
INFO 2026-06-03 23:03:08 SinglePassSamProgram Processed 645,000,000 records. Elapsed time: 02:17:06s. Time for last 1,000,000: 14s. Last read position: chrX:85,282,275
INFO 2026-06-03 23:03:15 SinglePassSamProgram Processed 646,000,000 records. Elapsed time: 02:17:12s. Time for last 1,000,000: 6s. Last read position: chrX:118,393,179
INFO 2026-06-03 23:03:23 SinglePassSamProgram Processed 647,000,000 records. Elapsed time: 02:17:20s. Time for last 1,000,000: 7s. Last read position: chrX:130,074,129
INFO 2026-06-03 23:03:32 SinglePassSamProgram Processed 648,000,000 records. Elapsed time: 02:17:29s. Time for last 1,000,000: 9s. Last read position: chrX:153,736,174
INFO 2026-06-03 23:03:45 SinglePassSamProgram Processed 649,000,000 records. Elapsed time: 02:17:43s. Time for last 1,000,000: 13s. Last read position: chrX:154,359,044
INFO 2026-06-03 23:04:10 SinglePassSamProgram Processed 650,000,000 records. Elapsed time: 02:18:08s. Time for last 1,000,000: 24s. Last read position: chrX:154,768,327
INFO 2026-06-03 23:04:16 SinglePassSamProgram Processed 651,000,000 records. Elapsed time: 02:18:13s. Time for last 1,000,000: 5s. Last read position: GL000220.1:114,121
INFO 2026-06-03 23:04:16 SinglePassSamProgram Processed 652,000,000 records. Elapsed time: 02:18:14s. Time for last 1,000,000: 0s. Last read position: GL000220.1:157,956
INFO 2026-06-03 23:04:17 SinglePassSamProgram Processed 653,000,000 records. Elapsed time: 02:18:15s. Time for last 1,000,000: 0s. Last read position: KI270733.1:128,168
INFO 2026-06-03 23:04:18 SinglePassSamProgram Processed 654,000,000 records. Elapsed time: 02:18:15s. Time for last 1,000,000: 0s. Last read position: KI270733.1:135,037
INFO 2026-06-03 23:04:18 SinglePassSamProgram Processed 655,000,000 records. Elapsed time: 02:18:16s. Time for last 1,000,000: 0s. Last read position: KI270733.1:178,731
INFO 2026-06-03 23:04:19 SinglePassSamProgram Processed 656,000,000 records. Elapsed time: 02:18:17s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 23:04:20 SinglePassSamProgram Processed 657,000,000 records. Elapsed time: 02:18:18s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 23:04:21 SinglePassSamProgram Processed 658,000,000 records. Elapsed time: 02:18:18s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 23:04:21 SinglePassSamProgram Processed 659,000,000 records. Elapsed time: 02:18:19s. Time for last 1,000,000: 0s. Last read position: */*
[Wed Jun 03 23:04:23 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 138.39 minutes.
Runtime.totalMemory()=3184525312