Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/f23bb31e470587dfe008557f43d6da/aih-tih-sc-2b9bfa-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/84d5298bf3cdd9fa97f7a8bf8c8dec/aih-tih-sc-2b9bfa-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/c0660c2463dea3196276ec03cf9ad7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/c0660c2463dea3196276ec03cf9ad7/.command.run
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-2b9bfa-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (14497421) splicing reads. 265801 splicing junctions. 189798 known splicing junctions. 76003 novel splicing junctions.
sampling 10% (28994842) splicing reads. 325181 splicing junctions. 202435 known splicing junctions. 122746 novel splicing junctions.
sampling 15% (43492263) splicing reads. 368304 splicing junctions. 209419 known splicing junctions. 158885 novel splicing junctions.
sampling 20% (57989684) splicing reads. 402425 splicing junctions. 213952 known splicing junctions. 188473 novel splicing junctions.
sampling 25% (72487105) splicing reads. 430624 splicing junctions. 217378 known splicing junctions. 213246 novel splicing junctions.
sampling 30% (86984526) splicing reads. 454214 splicing junctions. 219923 known splicing junctions. 234291 novel splicing junctions.
sampling 35% (101481947) splicing reads. 474446 splicing junctions. 221995 known splicing junctions. 252451 novel splicing junctions.
sampling 40% (115979368) splicing reads. 491901 splicing junctions. 223577 known splicing junctions. 268324 novel splicing junctions.
sampling 45% (130476789) splicing reads. 507189 splicing junctions. 224995 known splicing junctions. 282194 novel splicing junctions.
sampling 50% (144974210) splicing reads. 520631 splicing junctions. 226161 known splicing junctions. 294470 novel splicing junctions.
sampling 55% (159471631) splicing reads. 532506 splicing junctions. 227170 known splicing junctions. 305336 novel splicing junctions.
sampling 60% (173969052) splicing reads. 543008 splicing junctions. 228010 known splicing junctions. 314998 novel splicing junctions.
sampling 65% (188466473) splicing reads. 552133 splicing junctions. 228702 known splicing junctions. 323431 novel splicing junctions.
sampling 70% (202963894) splicing reads. 560065 splicing junctions. 229290 known splicing junctions. 330775 novel splicing junctions.
sampling 75% (217461315) splicing reads. 566893 splicing junctions. 229811 known splicing junctions. 337082 novel splicing junctions.
sampling 80% (231958736) splicing reads. 572779 splicing junctions. 230289 known splicing junctions. 342490 novel splicing junctions.
sampling 85% (246456157) splicing reads. 578002 splicing junctions. 230688 known splicing junctions. 347314 novel splicing junctions.
sampling 90% (260953578) splicing reads. 582215 splicing junctions. 230999 known splicing junctions. 351216 novel splicing junctions.
sampling 95% (275450999) splicing reads. 585602 splicing junctions. 231224 known splicing junctions. 354378 novel splicing junctions.
sampling 100% (289948421) splicing reads. 588125 splicing junctions. 231421 known splicing junctions. 356704 novel splicing junctions.
null device 
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