Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/f0dc8f2fcbe94c3098e95073d0ed28/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/fdeb85f7aab243090248dc64cab64d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/fdeb85f7aab243090248dc64cab64d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/60742acd8016a21773b54e1e7902a4/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (16935083) splicing reads. 275249 splicing junctions. 190164 known splicing junctions. 85085 novel splicing junctions.
sampling 10% (33870167) splicing reads. 339331 splicing junctions. 203443 known splicing junctions. 135888 novel splicing junctions.
sampling 15% (50805251) splicing reads. 385608 splicing junctions. 210731 known splicing junctions. 174877 novel splicing junctions.
sampling 20% (67740335) splicing reads. 422538 splicing junctions. 215574 known splicing junctions. 206964 novel splicing junctions.
sampling 25% (84675419) splicing reads. 453549 splicing junctions. 219105 known splicing junctions. 234444 novel splicing junctions.
sampling 30% (101610503) splicing reads. 479974 splicing junctions. 221854 known splicing junctions. 258120 novel splicing junctions.
sampling 35% (118545586) splicing reads. 502859 splicing junctions. 224034 known splicing junctions. 278825 novel splicing junctions.
sampling 40% (135480670) splicing reads. 523067 splicing junctions. 225797 known splicing junctions. 297270 novel splicing junctions.
sampling 45% (152415754) splicing reads. 540788 splicing junctions. 227275 known splicing junctions. 313513 novel splicing junctions.
sampling 50% (169350838) splicing reads. 556577 splicing junctions. 228562 known splicing junctions. 328015 novel splicing junctions.
sampling 55% (186285922) splicing reads. 570734 splicing junctions. 229682 known splicing junctions. 341052 novel splicing junctions.
sampling 60% (203221006) splicing reads. 583357 splicing junctions. 230584 known splicing junctions. 352773 novel splicing junctions.
sampling 65% (220156090) splicing reads. 594749 splicing junctions. 231381 known splicing junctions. 363368 novel splicing junctions.
sampling 70% (237091173) splicing reads. 604694 splicing junctions. 232092 known splicing junctions. 372602 novel splicing junctions.
sampling 75% (254026257) splicing reads. 613718 splicing junctions. 232729 known splicing junctions. 380989 novel splicing junctions.
sampling 80% (270961341) splicing reads. 621817 splicing junctions. 233299 known splicing junctions. 388518 novel splicing junctions.
sampling 85% (287896425) splicing reads. 629018 splicing junctions. 233778 known splicing junctions. 395240 novel splicing junctions.
sampling 90% (304831509) splicing reads. 635252 splicing junctions. 234186 known splicing junctions. 401066 novel splicing junctions.
sampling 95% (321766593) splicing reads. 640484 splicing junctions. 234529 known splicing junctions. 405955 novel splicing junctions.
sampling 100% (338701677) splicing reads. 644959 splicing junctions. 234799 known splicing junctions. 410160 novel splicing junctions.
null device 
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